Orfeo Toolbox  4.0
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itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage > Class Template Reference

LandmarkBasedTransformInitializer is a helper class intended to The class computes the transform that aligns the fixed and moving images given a set of landmarks. The class is templated over the Transform type. The transform computed gives the best fit transform that maps the fixed and moving images in a least squares sense. The indices are taken to correspond, so point 1 in the first set will get mapped close to point 1 in the second set, etc. An equal number of fixed and moving landmarks need to be specified using SetFixedLandmarks() SetMovingLandmarks(). Any number of landmarks may be specified. Call InitializeTransform() to initialize the transform. More...

#include <itkLandmarkBasedTransformInitializer.h>

+ Inheritance diagram for itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >:
+ Collaboration diagram for itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >:

Public Types

typedef AffineTransform
< ParameterValueType,
FixedImageType::ImageDimension > 
AffineTransformType
 
typedef SmartPointer< const SelfConstPointer
 
typedef
FixedImageType::ConstPointer 
FixedImagePointer
 
typedef TFixedImage FixedImageType
 
typedef
TransformType::InputPointType 
InputPointType
 
typedef std::vector
< LandmarkPointType
LandmarkPointContainer
 
typedef Point< double,
itkGetStaticConstMacro(ImageDimension) > 
LandmarkPointType
 
typedef
LandmarkWeightType::const_iterator 
LandmarkWeightConstIterator
 
typedef std::vector< double > LandmarkWeightType
 
typedef
MovingImageType::ConstPointer 
MovingImagePointer
 
typedef TMovingImage MovingImageType
 
typedef
TransformType::OutputVectorType 
OutputVectorType
 
typedef
TransformType::ParametersType 
ParametersType
 
typedef ParametersType::ValueType ParameterValueType
 
typedef SmartPointer< SelfPointer
 
typedef
LandmarkPointContainer::const_iterator 
PointsContainerConstIterator
 
typedef Rigid2DTransform
< ParameterValueType
Rigid2DTransformType
 
typedef
LandmarkBasedTransformInitializer 
Self
 
typedef Object Superclass
 
typedef TransformType::Pointer TransformPointer
 
typedef TTransform TransformType
 
typedef VersorRigid3DTransform
< ParameterValueType
VersorRigid3DTransformType
 

Public Member Functions

unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
virtual void Delete ()
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary (void)
 
const MetaDataDictionaryGetMetaDataDictionary (void) const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const char * GetNameOfClass () const
 
virtual const std::string & GetObjectName ()
 
virtual int GetReferenceCount () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
virtual void InitializeTransform ()
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
 itkCloneMacro (Self)
 
virtual void Modified () const
 
void Print (std::ostream &os, Indent indent=0) const
 
virtual void Register () const
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetFixedLandmarks (const LandmarkPointContainer &fixedLandmarks)
 
void SetLandmarkWeight (LandmarkWeightType &landmarkWeight)
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
void SetMovingLandmarks (const LandmarkPointContainer &movingLandmarks)
 
virtual void SetObjectName (std::string _arg)
 
virtual void SetReferenceCount (int)
 
virtual void SetTransform (TransformType *_arg)
 
virtual void UnRegister () const
 

Static Public Member Functions

static void BreakOnError ()
 
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 

Static Public Attributes

static const unsigned int ImageDimension = FixedImageType::ImageDimension
 
static const unsigned int InputSpaceDimension = TransformType::InputSpaceDimension
 
static const unsigned int OutputSpaceDimension = TransformType::OutputSpaceDimension
 

Protected Types

enum  InputTransformType {
  VersorRigid3Dtransform = 1,
  Rigid2Dtransfrom,
  Else
}
 
typedef int InternalReferenceCountType
 

Protected Member Functions

 LandmarkBasedTransformInitializer ()
 
 ~LandmarkBasedTransformInitializer ()
 
virtual LightObject::Pointer InternalClone () const
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
void PrintSelf (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 

Protected Attributes

InternalReferenceCountType m_ReferenceCount
 
SimpleFastMutexLock m_ReferenceCountLock
 

Private Member Functions

 LandmarkBasedTransformInitializer (const Self &)
 
template<typename TTransform2 >
void InternalInitializeTransform (TTransform *)
 
void InternalInitializeTransform (VersorRigid3DTransformType *)
 
void InternalInitializeTransform (Rigid2DTransformType *)
 
void InternalInitializeTransform (AffineTransformType *)
 
void operator= (const Self &)
 

Private Attributes

FixedImagePointer m_FixedImage
 
LandmarkPointContainer m_FixedLandmarks
 
LandmarkWeightType m_LandmarkWeight
 
MovingImagePointer m_MovingImage
 
LandmarkPointContainer m_MovingLandmarks
 
TransformPointer m_Transform
 

Detailed Description

template<typename TTransform, typename TFixedImage, typename TMovingImage>
class itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >

LandmarkBasedTransformInitializer is a helper class intended to The class computes the transform that aligns the fixed and moving images given a set of landmarks. The class is templated over the Transform type. The transform computed gives the best fit transform that maps the fixed and moving images in a least squares sense. The indices are taken to correspond, so point 1 in the first set will get mapped close to point 1 in the second set, etc. An equal number of fixed and moving landmarks need to be specified using SetFixedLandmarks() SetMovingLandmarks(). Any number of landmarks may be specified. Call InitializeTransform() to initialize the transform.

Currently, the following transforms are supported by the class: VersorRigid3DTransform Rigid2DTransform

The class is based in part on Hybrid/vtkLandmarkTransform originally implemented in python by David G. Gobbi.

The solution is based on Berthold K. P. Horn (1987), "Closed-form solution of absolute orientation using unit quaternions," http://people.csail.mit.edu/bkph/papers/Absolute_Orientation.pdf

The Affine Transform initializer is based on an algorithm by H Spaeth, and is described in the Insight Journal Article "Affine Transformation for Landmark Based Registration Initializer in ITK" by Kim E.Y., Johnson H., Williams N. available at http://midasjournal.com/browse/publication/825

{Registration/LandmarkBasedTransformInitializer,Rigidly register one image to another using manually specified landmarks}

Definition at line 70 of file itkLandmarkBasedTransformInitializer.h.

Member Typedef Documentation

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef AffineTransform< ParameterValueType, FixedImageType::ImageDimension > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::AffineTransformType

Definition at line 142 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef SmartPointer< const Self > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::ConstPointer

Definition at line 78 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef FixedImageType::ConstPointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::FixedImagePointer

Definition at line 102 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef TFixedImage itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::FixedImageType

Image Types to use in the initialization of the transform

Definition at line 95 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef TransformType::InputPointType itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InputPointType

Convenience typedefs

Definition at line 109 of file itkLandmarkBasedTransformInitializer.h.

typedef int itk::LightObject::InternalReferenceCountType
protectedinherited

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 152 of file itkLightObject.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef std::vector< LandmarkPointType > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::LandmarkPointContainer

Definition at line 112 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef Point< double, itkGetStaticConstMacro(ImageDimension) > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::LandmarkPointType

Definition at line 111 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef LandmarkWeightType::const_iterator itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::LandmarkWeightConstIterator

Definition at line 117 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef std::vector< double > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::LandmarkWeightType

Definition at line 116 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef MovingImageType::ConstPointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::MovingImagePointer

Definition at line 103 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef TMovingImage itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::MovingImageType

Definition at line 99 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef TransformType::OutputVectorType itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::OutputVectorType

Definition at line 110 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef TransformType::ParametersType itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::ParametersType

Definition at line 114 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef ParametersType::ValueType itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::ParameterValueType

Definition at line 115 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef SmartPointer< Self > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::Pointer

Definition at line 77 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef LandmarkPointContainer::const_iterator itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::PointsContainerConstIterator

Definition at line 113 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef Rigid2DTransform< ParameterValueType > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::Rigid2DTransformType

Definition at line 141 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef LandmarkBasedTransformInitializer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::Self

Standard class typedefs.

Definition at line 75 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef Object itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::Superclass

Definition at line 76 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef TransformType::Pointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::TransformPointer

Definition at line 88 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef TTransform itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::TransformType

Type of the transform to initialize

Definition at line 84 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
typedef VersorRigid3DTransform< ParameterValueType > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::VersorRigid3DTransformType

Supported Transform typedefs

Definition at line 140 of file itkLandmarkBasedTransformInitializer.h.

Member Enumeration Documentation

template<typename TTransform , typename TFixedImage , typename TMovingImage >
enum itk::LandmarkBasedTransformInitializer::InputTransformType
protected
Enumerator
VersorRigid3Dtransform 
Rigid2Dtransfrom 
Else 

Definition at line 153 of file itkLandmarkBasedTransformInitializer.h.

Constructor & Destructor Documentation

template<typename TTransform , typename TFixedImage , typename TMovingImage >
itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::LandmarkBasedTransformInitializer ( )
protected

Definition at line 32 of file itkLandmarkBasedTransformInitializer.hxx.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::~LandmarkBasedTransformInitializer ( )
inlineprotected

Definition at line 148 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::LandmarkBasedTransformInitializer ( const Self )
private

Member Function Documentation

unsigned long itk::Object::AddObserver ( const EventObject event,
Command cmd 
)
inherited

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

Definition at line 398 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), itk::ProgressAccumulator::RegisterInternalFilter(), otb::ImageFileWriter< TInputImage >::Update(), and otb::WriterWatcherBase::WriterWatcherBase().

unsigned long itk::Object::AddObserver ( const EventObject event,
Command cmd 
) const
inherited

Definition at line 409 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

void itk::LightObject::BreakOnError ( )
staticinherited

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

Definition at line 150 of file itkLightObject.cxx.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
virtual::itk::LightObject::Pointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

void itk::Object::DebugOff ( ) const
virtualinherited

Turn debugging output off.

Definition at line 253 of file itkObject.cxx.

void itk::Object::DebugOn ( ) const
virtualinherited

Turn debugging output on.

Definition at line 243 of file itkObject.cxx.

void itk::LightObject::Delete ( )
virtualinherited

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

Delete a itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C++ delete method will not work with reference counting.

Definition at line 91 of file itkLightObject.cxx.

Command * itk::Object::GetCommand ( unsigned long  tag)
inherited

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to assign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

Definition at line 421 of file itkObject.cxx.

References itk::Object::GetCommand(), and NULL.

Referenced by itk::Object::GetCommand().

bool itk::Object::GetDebug ( ) const
inherited

Get the value of the debug flag.

Definition at line 263 of file itkObject.cxx.

Referenced by otb::ogr::ImageReference< double >::GetDebug().

bool itk::Object::GetGlobalWarningDisplay ( )
staticinherited

Get the value of the global debug output control flag.

Definition at line 391 of file itkObject.cxx.

MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  )
inherited
const MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  ) const
inherited
Returns
A constant reference to this objects MetaDataDictionary.

Definition at line 548 of file itkObject.cxx.

References NULL.

ModifiedTimeType itk::Object::GetMTime ( void  ) const
virtualinherited

Return this objects modified time.

Return the modification for this object.

Reimplemented in itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexConjugatePixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType, TTransformPrecisionType >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::SpatialObject< VDimension >, itk::SpatialObject< 3 >, itk::SpatialObject< TDimension >, itk::SpatialObject< TMesh::PointDimension >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::InverseDisplacementFieldImageFilter< TInputImage, TOutputImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::TransformToDisplacementFieldSource< TOutputImage, TTransformPrecisionType >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::LandmarkDisplacementFieldSource< TOutputImage >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::MeshSpatialObject< TMesh >, and itk::SceneSpatialObject< TSpaceDimension >.

Definition at line 283 of file itkObject.cxx.

Referenced by itk::LandmarkDisplacementFieldSource< TOutputImage >::GetMTime(), itk::DeformationFieldSource< TOutputImage >::GetMTime(), itk::TransformToDisplacementFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::InverseDisplacementFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >::GetMTime(), itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< VDimension >::GetMTime(), itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType, TTransformPrecisionType >::GetMTime(), itk::SpatialObject< TMesh::PointDimension >::GetObjectMTime(), and itk::ProcessObject::UpdateOutputInformation().

template<typename TTransform , typename TFixedImage , typename TMovingImage >
virtual const char* itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::Object.

virtual const std::string& itk::Object::GetObjectName ( )
virtualinherited
virtual int itk::LightObject::GetReferenceCount ( ) const
inlinevirtualinherited

Gets the reference count on this object.

Definition at line 112 of file itkLightObject.h.

const TimeStamp & itk::Object::GetTimeStamp ( ) const
virtualinherited

Return this object's time stamp.

Return the modification for this object.

Reimplemented in itk::RealTimeClock.

Definition at line 293 of file itkObject.cxx.

Referenced by itk::RealTimeClock::GetTimeStamp().

static void itk::Object::GlobalWarningDisplayOff ( )
inlinestaticinherited

Definition at line 118 of file itkObject.h.

Referenced by itk::OutputWindow::DisplayText().

static void itk::Object::GlobalWarningDisplayOn ( )
inlinestaticinherited

Definition at line 116 of file itkObject.h.

bool itk::Object::HasObserver ( const EventObject event) const
inherited

Return true if an observer is registered for this event.

Definition at line 472 of file itkObject.cxx.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InitializeTransform ( )
virtual

Initialize the transform from the landmarks

Definition at line 544 of file itkLandmarkBasedTransformInitializer.hxx.

LightObject::Pointer itk::LightObject::InternalClone ( ) const
protectedvirtualinherited
template<typename TTransform , typename TFixedImage , typename TMovingImage >
template<typename TTransform2 >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InternalInitializeTransform ( TTransform *  )
private

fallback Initializer just sets transform to identity

default transform initializer, if transform type isn't specifically handled.

Definition at line 42 of file itkLandmarkBasedTransformInitializer.hxx.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InternalInitializeTransform ( VersorRigid3DTransformType )
private
template<typename TTransform , typename TFixedImage , typename TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InternalInitializeTransform ( Rigid2DTransformType )
private
template<typename TTransform , typename TFixedImage , typename TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InternalInitializeTransform ( AffineTransformType )
private

Initializer for AffineTransform

Compute an affine transform from landmark set. This was implemented by Eun Young Kim based on method described in the paper "Closed-form solution of absolute orientation using orthonormal matrices" by Horn, Hilden, and Negahdaripour. See http://www.opticsinfobase.org/abstract.cfm?&id=3143

Definition at line 58 of file itkLandmarkBasedTransformInitializer.hxx.

References itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::SetMatrix(), and itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::SetOffset().

void itk::Object::InvokeEvent ( const EventObject event)
inherited
void itk::Object::InvokeEvent ( const EventObject event) const
inherited

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

Definition at line 462 of file itkObject.cxx.

itk::LightObject::itkCloneMacro ( Self  )
inherited
void itk::Object::Modified ( void  ) const
virtualinherited

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Make sure this object's modified time is greater than all others.

Reimplemented in otb::SVMModel< TValue, TLabel >, itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexConjugatePixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, otb::SurfaceAdjacencyEffect6SCorrectionSchemeFilter< TInputImage, TOutputImage >, otb::GenericRSTransform< TScalarType, NInputDimensions, NOutputDimensions >, itk::GPUImage< TPixel, VImageDimension >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, TBufferConverter >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, MeanShift::VectorBufferConverter >, otb::GCPsToRPCSensorModelImageFilter< TImage >, otb::Polygon< TValue >, otb::ImageRegionAdaptativeSplitter< VImageDimension >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, otb::GenericInterpolateImageFunction< TInputImage, TFunction, TBoundaryCondition, TCoordRep >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, otb::PolyLineParametricPathWithValue< TValue, VDimension >, otb::PolyLineParametricPathWithValue< TValue, 2 >, otb::PhysicalToRPCSensorModelImageFilter< TImage >, itk::NormalizeImageFilter< TInputImage, TOutputImage >, and otb::StatisticsXMLFileReader< TMeasurementVector >.

Definition at line 312 of file itkObject.cxx.

Referenced by itk::AttributeSelectionLabelMapFilter< TImage, Functor::LabelLabelObjectAccessor< TImage::LabelObjectType > >::AddAttribute(), itk::Function::ConvergenceMonitoringFunction< TScalar, TScalar >::AddEnergyValue(), otb::Wrapper::InputVectorDataListParameter::AddFromFileName(), otb::Wrapper::InputImageListParameter::AddFromFileName(), otb::Wrapper::InputFilenameListParameter::AddFromFileName(), otb::Wrapper::InputImageListParameter::AddImage(), otb::Wrapper::InputVectorDataListParameter::AddNullElement(), otb::Wrapper::InputImageListParameter::AddNullElement(), otb::Wrapper::InputFilenameListParameter::AddNullElement(), otb::Wrapper::StringListParameter::AddNullElement(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::AddSeed(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::AddSpecifiedRegion(), otb::Wrapper::InputVectorDataListParameter::AddVectorData(), itk::PolyLineParametricPath< VDimension >::AddVertex(), itk::ChainCodePath< 2 >::ChangeStep(), itk::ChainCodePath2D::ChangeStep(), itk::FourierSeriesPath< VDimension >::Clear(), itk::HilbertPath< TIndexValue, VDimension >::Clear(), itk::ChainCodePath< 2 >::Clear(), itk::ChainCodePath2D::Clear(), itk::AttributeSelectionLabelMapFilter< TImage, Functor::LabelLabelObjectAccessor< TImage::LabelObjectType > >::ClearAttributeSet(), itk::Function::ConvergenceMonitoringFunction< TScalar, TScalar >::ClearEnergyValues(), itk::MultiTransform< TScalar, NDimensions >::ClearTransformQueue(), otb::Wrapper::InputFilenameListParameter::ClearValue(), otb::Wrapper::InputImageListParameter::ClearValue(), otb::Wrapper::InputVectorDataListParameter::ClearValue(), otb::Wrapper::InputFilenameListParameter::Erase(), otb::Wrapper::InputImageListParameter::Erase(), otb::Wrapper::InputVectorDataListParameter::Erase(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::InitializeSeedList(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::InitializeSpecifiedRegionList(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::InsertNarrowBandNode(), itk::ChainCodePath2D::InsertStep(), itk::ChainCodePath< 2 >::InsertStep(), otb::ogr::ImageReference< double >::Modified(), itk::MultiTransform< TScalar, NDimensions >::PopBackTransform(), itk::MultiTransform< TScalar, NDimensions >::PopFrontTransform(), itk::MultiTransform< TScalar, NDimensions >::PushBackTransform(), itk::MultiTransform< TScalar, NDimensions >::PushFrontTransform(), itk::Statistics::SubsamplerBase< TSample >::RequestMaximumNumberOfResults(), itk::AdaptImageFilter< TInputImage, TOutputImage, TAccessor >::SetAccessor(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetAdvectionScaling(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetAlivePoints(), itk::CompositeTransform< TScalar, NDimensions >::SetAllTransformsToOptimize(), itk::GaussianInterpolateImageFunction< TInputImage, TCoordRep >::SetAlpha(), itk::WeightedAddImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetAlpha(), itk::SigmoidImageFilter< TInputImage, TOutputImage >::SetAlpha(), itk::AttributeSelectionLabelMapFilter< TImage, Functor::LabelLabelObjectAccessor< TImage::LabelObjectType > >::SetAttributeSet(), itk::LevelSetVelocityNeighborhoodExtractor< TLevelSet, TAuxValue, VAuxDimension >::SetAuxImage(), itk::SigmoidImageFilter< TInputImage, TOutputImage >::SetBeta(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetBinaryMask(), otb::TileMapImageIO::SetCacheDirectory(), itk::MatrixOffsetTransformBase< TScalar, 3, 3 >::SetCenter(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::SetClosestPoint(), itk::ConstantPadImageFilter< TInputImage, TOutputImage >::SetConstant(), itk::DivideOrZeroOutImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetConstant(), itk::LBFGSBOptimizer::SetCostFunction(), itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetCovariance(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetCurvatureScaling(), itk::CurvesLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma(), itk::NarrowBandCurvesLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma(), itk::GeodesicActiveContourLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma(), itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma(), otb::ImageIOBase::SetDimensions(), itk::ImageIOBase::SetDimensions(), otb::ImageIOBase::SetDirection(), itk::ImageIOBase::SetDirection(), itk::ExtractImageFilter< TInputImage, TOutputImage >::SetDirectionCollapseToStrategy(), itk::ComposeDisplacementFieldsImageFilter< TInputImage, TOutputImage >::SetDisplacementField(), itk::InvertDisplacementFieldImageFilter< TInputImage, TOutputImage >::SetDisplacementField(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetEdgeWeight(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetEdgeWeight(), itk::watershed::Boundary< TScalar, TDimension >::SetFace(), itk::ExpNegativeImageFilter< TInputImage, TOutputImage >::SetFactor(), itk::FileListVideoIO::SetFileName(), itk::AnisotropicDiffusionImageFilter< TInputImage, TOutputImage >::SetFixedAverageGradientMagnitude(), itk::watershed::Boundary< TScalar, TDimension >::SetFlatHash(), itk::NaryFunctorImageFilter< TInputImage, TOutputImage, Functor::Maximum1< TInputImage::PixelType, TInputImage::PixelType > >::SetFunctor(), itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, Functor::ReciprocalHAlphaFunctor< TInputImage::PixelType, TOutputImage::PixelType > >::SetFunctor(), itk::HistogramToImageFilter< THistogram, TImage, Function::HistogramIntensityFunction< SizeValueType, TImage::PixelType > >::SetFunctor(), itk::TernaryFunctorImageFilter< TInputMultiSpectralImage, TInputMultiSpectralInterpImage, TInputPanchroImage, TOutputImage, TFunctor >::SetFunctor(), itk::ConnectedComponentFunctorImageFilter< TInputImage, TOutputImage, Functor::SimilarVectorsFunctor< TInputImage::ValueType >, TMaskImage >::SetFunctor(), itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, Functor::DivideOrZeroOut< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >::SetFunctor(), itk::ImageMomentsCalculator< TImage >::SetImage(), otb::Wrapper::InputImageListParameter::SetImageList(), itk::VectorIndexSelectionCastImageFilter< TInputImage, TOutputImage >::SetIndex(), itk::MatrixIndexSelectionImageFilter< TInputImage, TOutputImage >::SetIndices(), itk::TriangleMeshToBinaryImageFilter< TInputMesh, TOutputImage >::SetInfoImage(), itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::SetInitialBiasFieldCoefficients(), itk::AmoebaOptimizer::SetInitialSimplexDelta(), itk::HistogramAlgorithmBase< THistogram >::SetInputHistogram(), otb::HistogramStatisticsFunction< TInputHistogram, TOutput >::SetInputHistogram(), otb::ImageToGenericRSOutputParameters< TImage >::SetInputKeywordList(), itk::LabelVotingImageFilter< TInputImage, TOutputImage >::SetLabelForUndecidedPixels(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::SetLabelForUndecidedPixels(), itk::watershed::Segmenter< InputImageType >::SetLargestPossibleRegion(), itk::TemporalDataObject::SetLargestPossibleTemporalRegion(), otb::Wrapper::InputImageListParameter::SetListFromFileName(), otb::Wrapper::InputVectorDataListParameter::SetListFromFileName(), otb::Wrapper::InputFilenameListParameter::SetListFromFileName(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetLowerThreshold(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetLowerThreshold(), itk::MaskNegatedImageFilter< TInputImage, TMaskImage, TOutputImage >::SetMaskingValue(), itk::MaskImageFilter< TInputImage, TMaskImage, TOutputImage >::SetMaskingValue(), itk::MatrixOffsetTransformBase< TScalar, 3, 3 >::SetMatrix(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetMaximumCurvatureTimeStep(), itk::watershed::SegmentTable< TScalar >::SetMaximumDepth(), itk::DiscreteGaussianImageFilter< TInputImage, TOutputImage >::SetMaximumError(), itk::CannyEdgeDetectionImageFilter< ImageType, ImageType >::SetMaximumError(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::SetMaximumNumberOfIterations(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetMaximumPropagationTimeStep(), itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetMean(), itk::Statistics::MembershipFunctionBase< TMeasurementVector >::SetMeasurementVectorSize(), itk::Statistics::DistanceMetric< Array< double > >::SetMeasurementVectorSize(), itk::Statistics::Sample< ImageJointDomainTraits< TImage >::MeasurementVectorType >::SetMeasurementVectorSize(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::SetNarrowBandTotalRadius(), itk::OpenCVVideoIO::SetNextFrameToRead(), itk::VXLVideoIO::SetNextFrameToRead(), otb::Wrapper::InputImageListParameter::SetNthFileName(), otb::Wrapper::InputVectorDataListParameter::SetNthFileName(), otb::Wrapper::InputFilenameListParameter::SetNthFileName(), itk::CompositeTransform< TScalar, NDimensions >::SetNthTransformToOptimize(), otb::ImageIOBase::SetNumberOfDimensions(), itk::ImageIOBase::SetNumberOfDimensions(), itk::SparseFieldFourthOrderLevelSetImageFilter< TInputImage, TOutputImage >::SetNumberOfLayers(), itk::Statistics::UniformRandomSpatialNeighborSubsampler< TSample, TRegion >::SetNumberOfResultsRequested(), itk::FastMarchingReachedTargetNodesStoppingCriterion< TInput, TOutput >::SetNumberOfTargetsToBeReached(), itk::MatrixOffsetTransformBase< TScalar, 3, 3 >::SetOffset(), itk::NeighborhoodOperatorImageFunction< TInputImage, TOutput >::SetOperator(), itk::VectorNeighborhoodOperatorImageFilter< TInputImage, TOutputImage >::SetOperator(), itk::NeighborhoodOperatorImageFilter< TInputImage, TOutputImage, TOperatorValueType >::SetOperator(), otb::ImageIOBase::SetOrigin(), itk::ImageIOBase::SetOrigin(), itk::SigmoidImageFilter< TInputImage, TOutputImage >::SetOutputMaximum(), itk::SigmoidImageFilter< TInputImage, TOutputImage >::SetOutputMinimum(), otb::ImageToGenericRSOutputParameters< TImage >::SetOutputProjectionRef(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetOutsidePoints(), itk::MaskNegatedImageFilter< TInputImage, TMaskImage, TOutputImage >::SetOutsideValue(), itk::MaskImageFilter< TInputImage, TMaskImage, TOutputImage >::SetOutsideValue(), otb::MapProjectionAdapter::SetParameter(), itk::Statistics::ProbabilityDistribution::SetParameters(), itk::DisplacementFieldTransform< TScalar, NDimensions >::SetParameters(), itk::FFTWInverseFFTImageFilter< TInputImage, TOutputImage >::SetPlanRigor(), itk::FFTWHalfHermitianToRealInverseFFTImageFilter< TInputImage, TOutputImage >::SetPlanRigor(), itk::FFTWRealToHalfHermitianForwardFFTImageFilter< TInputImage, TOutputImage >::SetPlanRigor(), itk::FFTWForwardFFTImageFilter< TInputImage, TOutputImage >::SetPlanRigor(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::SetPriorProbabilities(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetPropagationScaling(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::ChangeInformationImageFilter< TInputImage >::SetReferenceImage(), itk::ImportImageFilter< TPixel, VImageDimension >::SetRegion(), itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::SetRegionOfInterest(), itk::ScaleTransform< TScalar, NDimensions >::SetScale(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints1(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints2(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSegmentationFunction(), itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetShapePriorScaling(), itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetShrinkFactorsPerDimension(), itk::GaussianInterpolateImageFunction< TInputImage, TCoordRep >::SetSigma(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingConductance(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingConductance(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingIterations(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingIterations(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingTimeStep(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingTimeStep(), itk::PowellOptimizer::SetSpaceDimension(), otb::ImageIOBase::SetSpacing(), itk::ImageIOBase::SetSpacing(), itk::SpatialObject< TMesh::PointDimension >::SetSpacing(), itk::ImageMomentsCalculator< TImage >::SetSpatialObjectMask(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetSpeedConstant(), itk::FastMarchingReachedTargetNodesStoppingCriterion< TInput, TOutput >::SetTargetCondition(), itk::FastMarchingReachedTargetNodesStoppingCriterion< TInput, TOutput >::SetTargetNodes(), itk::FastMarchingUpwindGradientImageFilter< TLevelSet, TSpeedImage >::SetTargetPoints(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::SetTerminationUpdateThreshold(), itk::DivideOrZeroOutImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetThreshold(), itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetThreshold(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::MatrixOffsetTransformBase< TScalar, 3, 3 >::SetTranslation(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetTrialPoints(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUpperThreshold(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUpperThreshold(), itk::Statistics::UniformRandomSpatialNeighborSubsampler< TSample, TRegion >::SetUseClockForSeed(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUseMinimalCurvature(), itk::watershed::Boundary< TScalar, TDimension >::SetValid(), otb::Wrapper::OutputProcessXMLParameter::SetValue(), otb::Wrapper::InputProcessXMLParameter::SetValue(), otb::Wrapper::OutputFilenameParameter::SetValue(), otb::Wrapper::InputFilenameParameter::SetValue(), otb::Wrapper::ListViewParameter::SetValue(), otb::Wrapper::ChoiceParameter::SetValue(), itk::DiscreteGaussianImageFilter< TInputImage, TOutputImage >::SetVariance(), itk::CannyEdgeDetectionImageFilter< ImageType, ImageType >::SetVariance(), otb::Wrapper::InputVectorDataListParameter::SetVectorDataList(), otb::MapProjectionAdapter::SetWkt(), itk::LabelVotingImageFilter< TInputImage, TOutputImage >::UnsetLabelForUndecidedPixels(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::UnsetLabelForUndecidedPixels(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::UnsetMaximumNumberOfIterations(), and itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::UnsetPriorProbabilities().

template<typename TTransform , typename TFixedImage , typename TMovingImage >
static Pointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::New ( )
static

New macro for creation of through a Smart Pointer.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::operator= ( const Self )
private
void itk::LightObject::Print ( std::ostream &  os,
Indent  indent = 0 
) const
inherited

Cause the object to print itself out.

Avoid DLL boundary problems. This function will be common to all itk objects. It just calls the header/self/trailer virtual print methods, which can be overriden by subclasses (any itk object).

Definition at line 137 of file itkLightObject.cxx.

References itk::Indent::GetNextIndent().

Referenced by itk::operator<<(), and itk::VideoStream< TFrameType >::PrintSelf().

void itk::LightObject::PrintHeader ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Define a default print header for all objects.

Definition at line 315 of file itkLightObject.cxx.

bool itk::Object::PrintObservers ( std::ostream &  os,
Indent  indent 
) const
protectedinherited

Definition at line 483 of file itkObject.cxx.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Chaining method to print an object's instance variables, as well as its superclasses.

Reimplemented from itk::Object.

Definition at line 563 of file itkLandmarkBasedTransformInitializer.hxx.

void itk::LightObject::PrintTrailer ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Define a default print trailer for all objects.

Definition at line 325 of file itkLightObject.cxx.

void itk::Object::Register ( ) const
virtualinherited

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

Definition at line 323 of file itkObject.cxx.

Referenced by itk::ObjectFactoryBase::RegisterFactory(), and itk::ObjectFactoryBase::RegisterFactoryInternal().

void itk::Object::RemoveAllObservers ( )
inherited

Remove all observers .

Definition at line 442 of file itkObject.cxx.

void itk::Object::RemoveObserver ( unsigned long  tag)
inherited

Remove the observer with this tag value.

Definition at line 432 of file itkObject.cxx.

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), and otb::ImageFileWriter< TInputImage >::Update().

void itk::Object::SetDebug ( bool  debugFlag) const
inherited

Set the value of the debug flag. A non-zero value turns debugging on.

Definition at line 273 of file itkObject.cxx.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::SetFixedLandmarks ( const LandmarkPointContainer fixedLandmarks)
inline
void itk::Object::SetGlobalWarningDisplay ( bool  val)
staticinherited

This is a global flag that controls whether any debug, warning or error messages are displayed.

Set the value of the global debug output control flag.

Definition at line 381 of file itkObject.cxx.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::SetLandmarkWeight ( LandmarkWeightType landmarkWeight)
inline

Set the landmark weight point containers Weight includes diagonal elements of weight matrix

Definition at line 134 of file itkLandmarkBasedTransformInitializer.h.

References itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::m_LandmarkWeight.

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary rhs)
inherited
template<typename TTransform , typename TFixedImage , typename TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::SetMovingLandmarks ( const LandmarkPointContainer movingLandmarks)
inline
virtual void itk::Object::SetObjectName ( std::string  _arg)
virtualinherited

A facility to help application programmers set a human identifiable name for a given object. This has no inherent use in ITK, but is a convenience to allow developers to provide a name for this object.

void itk::Object::SetReferenceCount ( int  ref)
virtualinherited

Sets the reference count (use with care)

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 359 of file itkObject.cxx.

void itk::Object::SetTimeStamp ( const TimeStamp timeStamp)
protectedvirtualinherited

Set the time stamp of this object. This method must be used very carefully !!!. Most mortals will never need to call this method.

Set the time stamp of this object. To be used very carefully !!!. Most mortals will never need to call this method.

Definition at line 302 of file itkObject.cxx.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
virtual void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::SetTransform ( TransformType _arg)
virtual

Set the transform to be initialized

void itk::Object::UnRegister ( ) const
virtualinherited

Decrease the reference count (release by another object).

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 337 of file itkObject.cxx.

Referenced by itk::ObjectFactoryBase::DeleteNonInternalFactory(), and itk::Object::New().

Member Data Documentation

template<typename TTransform , typename TFixedImage , typename TMovingImage >
const unsigned int itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::ImageDimension = FixedImageType::ImageDimension
static

Determine the image dimension.

Definition at line 106 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
const unsigned int itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InputSpaceDimension = TransformType::InputSpaceDimension
static

Dimension of parameters.

Definition at line 91 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
FixedImagePointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::m_FixedImage
private

Definition at line 174 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
LandmarkPointContainer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::m_FixedLandmarks
private
template<typename TTransform , typename TFixedImage , typename TMovingImage >
LandmarkWeightType itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::m_LandmarkWeight
private
template<typename TTransform , typename TFixedImage , typename TMovingImage >
MovingImagePointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::m_MovingImage
private

Definition at line 175 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
LandmarkPointContainer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::m_MovingLandmarks
private
InternalReferenceCountType itk::LightObject::m_ReferenceCount
mutableprotectedinherited

Number of uses of this object by other objects.

Definition at line 156 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock
mutableprotectedinherited

Mutex lock to protect modification to the reference count

Definition at line 159 of file itkLightObject.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
TransformPointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::m_Transform
private

Definition at line 180 of file itkLandmarkBasedTransformInitializer.h.

template<typename TTransform , typename TFixedImage , typename TMovingImage >
const unsigned int itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::OutputSpaceDimension = TransformType::OutputSpaceDimension
static

Definition at line 92 of file itkLandmarkBasedTransformInitializer.h.


The documentation for this class was generated from the following files:

Generated at Sat Mar 8 2014 17:18:58 for Orfeo Toolbox with doxygen 1.8.3.1