Orfeo Toolbox  3.16
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itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField > Class Template Reference

#include <itkLevelSetMotionRegistrationFunction.h>

+ Inheritance diagram for itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >:
+ Collaboration diagram for itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >:

List of all members.

Classes

struct  GlobalDataStruct

Public Types

typedef SmartPointer< const SelfConstPointer
typedef double CoordRepType
typedef CovariantVector
< double,
itkGetStaticConstMacro(ImageDimension)> 
CovariantVectorType
typedef
ZeroFluxNeumannBoundaryCondition
< ImageType
DefaultBoundaryConditionType
typedef
LinearInterpolateImageFunction
< MovingImageType,
CoordRepType
DefaultInterpolatorType
typedef
Superclass::DeformationFieldType 
DeformationFieldType
typedef
Superclass::DeformationFieldTypePointer 
DeformationFieldTypePointer
typedef
Superclass::FixedImagePointer 
FixedImagePointer
typedef Superclass::FixedImageType FixedImageType
typedef Superclass::FloatOffsetType FloatOffsetType
typedef TDeformationField ImageType
typedef FixedImageType::IndexType IndexType
typedef InterpolatorType::Pointer InterpolatorPointer
typedef
InterpolateImageFunction
< MovingImageType,
CoordRepType
InterpolatorType
typedef
Superclass::MovingImagePointer 
MovingImagePointer
typedef
MovingImageSmoothingFilterType::Pointer 
MovingImageSmoothingFilterPointer
typedef
SmoothingRecursiveGaussianImageFilter
< MovingImageType
MovingImageSmoothingFilterType
typedef Superclass::MovingImageType MovingImageType
typedef
MovingImageType::SpacingType 
MovingSpacingType
typedef Vector< PixelRealType,
itkGetStaticConstMacro(ImageDimension)> 
NeighborhoodScalesType
typedef
Superclass::NeighborhoodType 
NeighborhoodType
typedef double PixelRealType
typedef Superclass::PixelType PixelType
typedef SmartPointer< SelfPointer
typedef InterpolatorType::PointType PointType
typedef Superclass::RadiusType RadiusType
typedef
LevelSetMotionRegistrationFunction 
Self
typedef FixedImageType::SizeType SizeType
typedef FixedImageType::SpacingType SpacingType
typedef
PDEDeformableRegistrationFunction
< TFixedImage, TMovingImage,
TDeformationField > 
Superclass
typedef Superclass::TimeStepType TimeStepType
typedef Vector< double,
itkGetStaticConstMacro(ImageDimension)> 
VectorType

Public Member Functions

virtual TimeStepType ComputeGlobalTimeStep (void *GlobalData) const
const NeighborhoodScalesType ComputeNeighborhoodScales () const
virtual PixelType ComputeUpdate (const NeighborhoodType &neighborhood, void *globalData, const FloatOffsetType &offset=FloatOffsetType(0.0))
virtual ::itk::LightObject::Pointer CreateAnother (void) const
virtual void Delete ()
virtual double GetAlpha () const
DeformationFieldTypeGetDeformationField (void)
double GetEnergy () const
const FixedImageTypeGetFixedImage (void) const
virtual void * GetGlobalDataPointer () const
virtual double GetGradientMagnitudeThreshold () const
virtual double GetGradientSmoothingStandardDeviations () const
double GetGradientStep () const
virtual double GetIntensityDifferenceThreshold () const
virtual double GetMetric () const
const MovingImageTypeGetMovingImage (void) const
InterpolatorTypeGetMovingImageInterpolator (void)
virtual const char * GetNameOfClass () const
bool GetNormalizeGradient () const
const RadiusTypeGetRadius () const
virtual int GetReferenceCount () const
virtual double GetRMSChange () const
bool GetUseImageSpacing () const
virtual void InitializeIteration ()
void Print (std::ostream &os, Indent indent=0) const
virtual void Register () const
virtual void ReleaseGlobalDataPointer (void *GlobalData) const
virtual void SetAlpha (double)
void SetDeformationField (DeformationFieldTypePointer ptr)
void SetEnergy (double e)
void SetFixedImage (const FixedImageType *ptr)
virtual void SetGradientMagnitudeThreshold (double)
virtual void SetGradientSmoothingStandardDeviations (double)
void SetGradientStep (double e)
virtual void SetIntensityDifferenceThreshold (double)
void SetMovingImage (const MovingImageType *ptr)
void SetMovingImageInterpolator (InterpolatorType *ptr)
void SetNormalizeGradient (bool e)
void SetRadius (const RadiusType &r)
virtual void SetReferenceCount (int)
void SetScaleCoefficients (PixelRealType vals[ImageDimension])
void SetUseImageSpacing (bool)
virtual void UnRegister () const

Static Public Member Functions

static void BreakOnError ()
static Pointer New ()

Static Public Attributes

static const unsigned int ImageDimension = Superclass::ImageDimension

Protected Types

typedef
ConstNeighborhoodIterator
< FixedImageType
FixedImageNeighborhoodIteratorType
typedef int InternalReferenceCountType

Protected Member Functions

 LevelSetMotionRegistrationFunction ()
 ~LevelSetMotionRegistrationFunction ()
virtual void PrintHeader (std::ostream &os, Indent indent) const
void PrintSelf (std::ostream &os, Indent indent) const
virtual void PrintTrailer (std::ostream &os, Indent indent) const

Protected Attributes

DeformationFieldTypePointer m_DeformationField
double m_Energy
FixedImagePointer m_FixedImage
double m_GradientStep
MovingImagePointer m_MovingImage
bool m_NormalizeGradient
RadiusType m_Radius
InternalReferenceCountType m_ReferenceCount
SimpleFastMutexLock m_ReferenceCountLock
PixelRealType m_ScaleCoefficients [ImageDimension]

Private Member Functions

 LevelSetMotionRegistrationFunction (const Self &)
void operator= (const Self &)

Private Attributes

double m_Alpha
PointType m_FixedImageOrigin
SpacingType m_FixedImageSpacing
double m_GradientMagnitudeThreshold
double m_GradientSmoothingStandardDeviations
double m_IntensityDifferenceThreshold
double m_Metric
SimpleFastMutexLock m_MetricCalculationLock
InterpolatorPointer m_MovingImageInterpolator
MovingImageSmoothingFilterPointer m_MovingImageSmoothingFilter
unsigned long m_NumberOfPixelsProcessed
double m_RMSChange
InterpolatorPointer m_SmoothMovingImageInterpolator
double m_SumOfSquaredChange
double m_SumOfSquaredDifference
bool m_UseImageSpacing

Detailed Description

template<class TFixedImage, class TMovingImage, class TDeformationField>
class itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >

This class encapsulate the PDE which drives the demons registration algorithm. It is used by LevelSetMotionRegistrationFilter to compute the output deformation field which will map a moving image onto a a fixed image.

Non-integer moving image values are obtained by using interpolation. The default interpolator is of type LinearInterpolateImageFunction. The user may set other interpolators via method SetMovingImageInterpolator. Note that the input interpolator must derive from baseclass InterpolateImageFunction.

This class is templated over the fixed image type, moving image type, and the deformation field type.

Warning:
This filter assumes that the fixed image type, moving image type and deformation field type all have the same number of dimensions.
See also:
LevelSetMotionRegistrationFilter

Definition at line 54 of file itkLevelSetMotionRegistrationFunction.h.


Member Typedef Documentation

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef SmartPointer<const Self> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::ConstPointer
template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::CoordRepType

Interpolator type.

Definition at line 105 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef CovariantVector<double,itkGetStaticConstMacro(ImageDimension)> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::CovariantVectorType

Definition at line 116 of file itkLevelSetMotionRegistrationFunction.h.

The default boundary condition for finite difference functions that is used unless overridden in the Evaluate() method.

Definition at line 91 of file itkFiniteDifferenceFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef LinearInterpolateImageFunction<MovingImageType,CoordRepType> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::DefaultInterpolatorType

Definition at line 111 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::DeformationFieldType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::DeformationFieldType
template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::DeformationFieldTypePointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::DeformationFieldTypePointer
template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef ConstNeighborhoodIterator<FixedImageType> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::FixedImageNeighborhoodIteratorType
protected

FixedImage image neighborhood iterator type.

Definition at line 211 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::FixedImagePointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::FixedImagePointer
template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::FixedImageType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::FixedImageType
template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::FloatOffsetType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::FloatOffsetType

A floating point offset from an image grid location. Used for interpolation among grid values in a neighborhood.

Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >.

Definition at line 101 of file itkLevelSetMotionRegistrationFunction.h.

typedef TDeformationField itk::FiniteDifferenceFunction< TDeformationField >::ImageType
inherited

Extract some parameters from the image type

Definition at line 75 of file itkFiniteDifferenceFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef FixedImageType::IndexType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::IndexType

Definition at line 84 of file itkLevelSetMotionRegistrationFunction.h.

typedef int itk::LightObject::InternalReferenceCountType
protectedinherited

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 137 of file itkLightObject.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef InterpolatorType::Pointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::InterpolatorPointer

Definition at line 108 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef InterpolateImageFunction<MovingImageType,CoordRepType> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::InterpolatorType

Definition at line 107 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::MovingImagePointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::MovingImagePointer
template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef MovingImageSmoothingFilterType::Pointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::MovingImageSmoothingFilterPointer

Definition at line 122 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef SmoothingRecursiveGaussianImageFilter<MovingImageType> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::MovingImageSmoothingFilterType

Moving image gradient calculator type.

Definition at line 120 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::MovingImageType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::MovingImageType
template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef MovingImageType::SpacingType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::MovingSpacingType

Definition at line 79 of file itkLevelSetMotionRegistrationFunction.h.

typedef Vector<PixelRealType,itkGetStaticConstMacro(ImageDimension)> itk::FiniteDifferenceFunction< TDeformationField >::NeighborhoodScalesType
inherited

The type of data structure that holds the scales with which the neighborhood is weighted to properly account for spacing and neighborhood radius.

Definition at line 102 of file itkFiniteDifferenceFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::NeighborhoodType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::NeighborhoodType

The type of data structure that is passed to this function object to evaluate at a pixel that does not lie on a data set boundary.

Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >.

Definition at line 100 of file itkLevelSetMotionRegistrationFunction.h.

typedef double itk::FiniteDifferenceFunction< TDeformationField >::PixelRealType
inherited

Definition at line 80 of file itkFiniteDifferenceFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::PixelType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::PixelType

Inherit some enums from the superclass.

Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >.

Definition at line 98 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef SmartPointer<Self> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::Pointer
template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef InterpolatorType::PointType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::PointType

Definition at line 109 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::RadiusType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::RadiusType
template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef LevelSetMotionRegistrationFunction itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::Self
template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef FixedImageType::SizeType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SizeType

Definition at line 85 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef FixedImageType::SpacingType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SpacingType

Definition at line 86 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField > itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::Superclass
template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::TimeStepType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::TimeStepType

Define the TimeStepType to always be double.

Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >.

Definition at line 102 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Vector<double,itkGetStaticConstMacro(ImageDimension)> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::VectorType

Vector types.

Definition at line 114 of file itkLevelSetMotionRegistrationFunction.h.


Constructor & Destructor Documentation

template<class TFixedImage , class TMovingImage , class TDeformationField >
itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::LevelSetMotionRegistrationFunction ( )
protected

Default constructor

Definition at line 31 of file itkLevelSetMotionRegistrationFunction.txx.

References itk::SmartPointer< TObjectType >::GetPointer(), and NULL.

template<class TFixedImage, class TMovingImage, class TDeformationField>
itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::~LevelSetMotionRegistrationFunction ( )
inlineprotected

Definition at line 206 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::LevelSetMotionRegistrationFunction ( const Self )
private

Member Function Documentation

void itk::LightObject::BreakOnError ( )
staticinherited

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

Definition at line 149 of file itkLightObject.cxx.

template<class TFixedImage , class TMovingImage , class TDeformationField >
LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::TimeStepType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::ComputeGlobalTimeStep ( void *  GlobalData) const
virtual

Compute the time step that can taken for this iterations. In this context, the timestep is a function of the maximum gradients.

Compute the global time step for this iteration.

Implements itk::FiniteDifferenceFunction< TDeformationField >.

Definition at line 421 of file itkLevelSetMotionRegistrationFunction.txx.

References itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GlobalDataStruct::m_MaxL1Norm.

const NeighborhoodScalesType itk::FiniteDifferenceFunction< TDeformationField >::ComputeNeighborhoodScales ( ) const
inherited

Compute the scales that weight the neighborhood during difference operations to properly account for spacing and neighborhood radius

template<class TFixedImage , class TMovingImage , class TDeformationField >
LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::PixelType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::ComputeUpdate ( const NeighborhoodType it,
void *  gd,
const FloatOffsetType offset = FloatOffsetType(0.0) 
)
virtual
template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual::itk::LightObject::Pointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightObject.

void itk::LightObject::Delete ( )
virtualinherited

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

Delete a itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C++ delete method will not work with reference counting.

Definition at line 88 of file itkLightObject.cxx.

template<class TFixedImage , class TMovingImage , class TDeformationField >
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetAlpha ( void  ) const
virtual
template<class TFixedImage , class TMovingImage , class TDeformationField >
DeformationFieldType* itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetDeformationField ( void  )
inlineinherited

Get the deformation field. This function should have been declared const. It is not for backward compatibility reasons.

Definition at line 88 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage , class TMovingImage , class TDeformationField >
double itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetEnergy ( ) const
inlineinherited
template<class TFixedImage , class TMovingImage , class TDeformationField >
const FixedImageType* itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetFixedImage ( void  ) const
inlineinherited

Get the fixed image.

Definition at line 79 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual void* itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetGlobalDataPointer ( ) const
inlinevirtual
template<class TFixedImage , class TMovingImage , class TDeformationField >
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetGradientMagnitudeThreshold ( ) const
virtual
template<class TFixedImage , class TMovingImage , class TDeformationField >
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetGradientSmoothingStandardDeviations ( ) const
virtual
template<class TFixedImage , class TMovingImage , class TDeformationField >
double itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetGradientStep ( ) const
inlineinherited

Definition at line 94 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage , class TMovingImage , class TDeformationField >
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetIntensityDifferenceThreshold ( ) const
virtual
template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetMetric ( ) const
inlinevirtual

Get the metric value. The metric value is the mean square difference in intensity between the fixed image and transforming moving image computed over the the overlapping region between the two images.

Definition at line 164 of file itkLevelSetMotionRegistrationFunction.h.

Referenced by itk::LevelSetMotionRegistrationFilter< TFixedImage, TMovingImage, TDeformationField >::GetMetric().

template<class TFixedImage , class TMovingImage , class TDeformationField >
const MovingImageType* itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetMovingImage ( void  ) const
inlineinherited

Get the moving image.

Definition at line 71 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
InterpolatorType* itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetMovingImageInterpolator ( void  )
inline

Get the moving image interpolator.

Definition at line 129 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual const char* itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >.

template<class TFixedImage , class TMovingImage , class TDeformationField >
bool itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetNormalizeGradient ( ) const
inlineinherited

Definition at line 96 of file itkPDEDeformableRegistrationFunction.h.

const RadiusType& itk::FiniteDifferenceFunction< TDeformationField >::GetRadius ( void  ) const
inlineinherited

Returns the radius of the neighborhood this FiniteDifferenceFunction needs to perform its calculations.

Definition at line 145 of file itkFiniteDifferenceFunction.h.

virtual int itk::LightObject::GetReferenceCount ( ) const
inlinevirtualinherited

Gets the reference count on this object.

Definition at line 105 of file itkLightObject.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetRMSChange ( ) const
inlinevirtual
template<class TFixedImage , class TMovingImage , class TDeformationField >
bool itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetUseImageSpacing ( ) const

Return the flag that defines whether the image spacing should be taken into account in computations.

Definition at line 203 of file itkLevelSetMotionRegistrationFunction.txx.

template<class TFixedImage , class TMovingImage , class TDeformationField >
void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::InitializeIteration ( )
virtual

Set the object's state before each iteration.

Set the function state values before each iteration

Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >.

Definition at line 226 of file itkLevelSetMotionRegistrationFunction.txx.

template<class TFixedImage, class TMovingImage, class TDeformationField>
static Pointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::New ( )
static

Method for creation through the object factory.

Reimplemented from itk::LightObject.

template<class TFixedImage, class TMovingImage, class TDeformationField>
void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::operator= ( const Self )
private
void itk::LightObject::Print ( std::ostream &  os,
Indent  indent = 0 
) const
inherited

Cause the object to print itself out.

Avoid DLL boundary problems. This function will be common to all itk objects. It just calls the header/self/trailer virtual print methods, which can be overriden by subclasses (any itk object).

Definition at line 135 of file itkLightObject.cxx.

References itk::Indent::GetNextIndent().

Referenced by itk::operator<<().

void itk::LightObject::PrintHeader ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Define a default print header for all objects.

Definition at line 320 of file itkLightObject.cxx.

template<class TFixedImage , class TMovingImage , class TDeformationField >
void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Chaining method to print an object's instance variables, as well as its superclasses.

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >.

Definition at line 79 of file itkLevelSetMotionRegistrationFunction.txx.

void itk::LightObject::PrintTrailer ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Define a default print trailer for all objects.

Definition at line 331 of file itkLightObject.cxx.

void itk::LightObject::Register ( ) const
virtualinherited

Increase the reference count (mark as used by another object).

Reimplemented in itk::ExceptionObject::ReferenceCountedExceptionData, and itk::Object.

Definition at line 160 of file itkLightObject.cxx.

template<class TFixedImage , class TMovingImage , class TDeformationField >
void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::ReleaseGlobalDataPointer ( void *  GlobalData) const
virtual
template<class TFixedImage , class TMovingImage , class TDeformationField >
void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetAlpha ( double  alpha)
virtual

Set/Get the parameter alpha. Alpha is added to the calculated gradient magnitude prior to normalizing the gradient to protect against numerical instability as the gradient magnitude approaches zero. This should be set as a small fraction of the intensity dynamic range, for instance 0.04%. Default is the absolute (not percentage) value of 0.1.

Definition at line 112 of file itkLevelSetMotionRegistrationFunction.txx.

Referenced by itk::LevelSetMotionRegistrationFilter< TFixedImage, TMovingImage, TDeformationField >::SetAlpha().

template<class TFixedImage , class TMovingImage , class TDeformationField >
void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetDeformationField ( DeformationFieldTypePointer  ptr)
inlineinherited
template<class TFixedImage , class TMovingImage , class TDeformationField >
void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetEnergy ( double  e)
inlineinherited

Definition at line 91 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage , class TMovingImage , class TDeformationField >
void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetFixedImage ( const FixedImageType ptr)
inlineinherited
template<class TFixedImage , class TMovingImage , class TDeformationField >
void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetGradientMagnitudeThreshold ( double  threshold)
virtual

Set/Get the threshold below which the gradient magnitude is considered the zero vector. Default is 1e-9.

Definition at line 157 of file itkLevelSetMotionRegistrationFunction.txx.

Referenced by itk::LevelSetMotionRegistrationFilter< TFixedImage, TMovingImage, TDeformationField >::SetGradientMagnitudeThreshold().

template<class TFixedImage , class TMovingImage , class TDeformationField >
void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetGradientSmoothingStandardDeviations ( double  sigma)
virtual

Set/Get the standard deviation used for smoothing the moving image prior to calculating gradients.

Definition at line 180 of file itkLevelSetMotionRegistrationFunction.txx.

Referenced by itk::LevelSetMotionRegistrationFilter< TFixedImage, TMovingImage, TDeformationField >::SetGradientSmoothingStandardDeviations().

template<class TFixedImage , class TMovingImage , class TDeformationField >
void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetGradientStep ( double  e)
inlineinherited

Definition at line 93 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage , class TMovingImage , class TDeformationField >
void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetIntensityDifferenceThreshold ( double  threshold)
virtual

Set/Get the threshold below which the absolute difference of intensity yields a match. When the intensities match between a moving and fixed image pixel, the update vector (for that iteration) will be the zero vector. Default is 0.001.

Definition at line 134 of file itkLevelSetMotionRegistrationFunction.txx.

Referenced by itk::LevelSetMotionRegistrationFilter< TFixedImage, TMovingImage, TDeformationField >::SetIntensityDifferenceThreshold().

template<class TFixedImage , class TMovingImage , class TDeformationField >
void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetMovingImage ( const MovingImageType ptr)
inlineinherited
template<class TFixedImage, class TMovingImage, class TDeformationField>
void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetMovingImageInterpolator ( InterpolatorType ptr)
inline

Set the moving image interpolator.

Definition at line 125 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage , class TMovingImage , class TDeformationField >
void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetNormalizeGradient ( bool  e)
inlineinherited

Definition at line 95 of file itkPDEDeformableRegistrationFunction.h.

void itk::FiniteDifferenceFunction< TDeformationField >::SetRadius ( const RadiusType r)
inlineinherited

Sets the radius of the neighborhood this FiniteDifferenceFunction needs to perform its calculations.

Definition at line 140 of file itkFiniteDifferenceFunction.h.

void itk::LightObject::SetReferenceCount ( int  ref)
virtualinherited

Sets the reference count on this object. This is a dangerous method, use it with care.

Sets the reference count (use with care)

Reimplemented in itk::Object.

Definition at line 244 of file itkLightObject.cxx.

void itk::FiniteDifferenceFunction< TDeformationField >::SetScaleCoefficients ( PixelRealType  vals[ImageDimension])
inlineinherited

Set the ScaleCoefficients for the difference operators. The defaults a 1.0. These can be set to take the image spacing into account.

Definition at line 151 of file itkFiniteDifferenceFunction.h.

template<class TFixedImage , class TMovingImage , class TDeformationField >
void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetUseImageSpacing ( bool  useImageSpacing)

Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacing ON, due to a backward compatibility state.

Set the flag that defines whether the image spacing should be taken into account in computations.

Definition at line 215 of file itkLevelSetMotionRegistrationFunction.txx.

Referenced by itk::LevelSetMotionRegistrationFilter< TFixedImage, TMovingImage, TDeformationField >::InitializeIteration().

void itk::LightObject::UnRegister ( ) const
virtualinherited

Decrease the reference count (release by another object).

Reimplemented in itk::ExceptionObject::ReferenceCountedExceptionData, and itk::Object.

Definition at line 192 of file itkLightObject.cxx.

Referenced by itk::LightObject::New().


Member Data Documentation

template<class TFixedImage, class TMovingImage, class TDeformationField>
const unsigned int itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::ImageDimension = Superclass::ImageDimension
static

Inherit some enums from the superclass.

Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >.

Definition at line 95 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_Alpha
private

Stabilization factor for normalizing gradients to protect against small gradient magnitudes

Definition at line 240 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage , class TMovingImage , class TDeformationField >
DeformationFieldTypePointer itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_DeformationField
protectedinherited

The deformation field.

Definition at line 128 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage , class TMovingImage , class TDeformationField >
double itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_Energy
mutableprotectedinherited

Definition at line 130 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage , class TMovingImage , class TDeformationField >
FixedImagePointer itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_FixedImage
protectedinherited

The fixed image.

Definition at line 125 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
PointType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_FixedImageOrigin
private

Definition at line 229 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
SpacingType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_FixedImageSpacing
private

Cache fixed image information.

Definition at line 228 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_GradientMagnitudeThreshold
private

Threshold below which the gradient is considered zero.

Definition at line 243 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_GradientSmoothingStandardDeviations
private

Smoothing parameter for gradient calculation

Definition at line 249 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage , class TMovingImage , class TDeformationField >
double itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_GradientStep
mutableprotectedinherited

Definition at line 132 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_IntensityDifferenceThreshold
private

Threshold below which two intensity value are assumed to match.

Definition at line 246 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_Metric
mutableprivate

The metric value is the mean square difference in intensity between the fixed image and transforming moving image computed over the the overlapping region between the two images.

Definition at line 254 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
SimpleFastMutexLock itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_MetricCalculationLock
mutableprivate

Mutex lock to protect modification to metric.

Definition at line 261 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage , class TMovingImage , class TDeformationField >
MovingImagePointer itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_MovingImage
protectedinherited

The moving image.

Definition at line 122 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
InterpolatorPointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_MovingImageInterpolator
private

Function to interpolate the moving image.

Definition at line 235 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
MovingImageSmoothingFilterPointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_MovingImageSmoothingFilter
private

Function to compute derivatives of the moving image.

Definition at line 232 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage , class TMovingImage , class TDeformationField >
bool itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_NormalizeGradient
protectedinherited

Definition at line 131 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
unsigned long itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_NumberOfPixelsProcessed
mutableprivate

Definition at line 256 of file itkLevelSetMotionRegistrationFunction.h.

RadiusType itk::FiniteDifferenceFunction< TDeformationField >::m_Radius
protectedinherited

Definition at line 201 of file itkFiniteDifferenceFunction.h.

InternalReferenceCountType itk::LightObject::m_ReferenceCount
mutableprotectedinherited

Number of uses of this object by other objects.

Definition at line 141 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock
mutableprotectedinherited

Mutex lock to protect modification to the reference count

Definition at line 144 of file itkLightObject.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_RMSChange
mutableprivate

Definition at line 257 of file itkLevelSetMotionRegistrationFunction.h.

PixelRealType itk::FiniteDifferenceFunction< TDeformationField >::m_ScaleCoefficients[ImageDimension]
protectedinherited

Definition at line 202 of file itkFiniteDifferenceFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
InterpolatorPointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_SmoothMovingImageInterpolator
private

Definition at line 236 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_SumOfSquaredChange
mutableprivate

Definition at line 258 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_SumOfSquaredDifference
mutableprivate

Definition at line 255 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
bool itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_UseImageSpacing
private

Definition at line 263 of file itkLevelSetMotionRegistrationFunction.h.


The documentation for this class was generated from the following files:

Generated at Sun Feb 3 2013 02:02:01 for Orfeo Toolbox with doxygen 1.8.1.1