Orfeo Toolbox  3.16
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Types | Protected Member Functions | Protected Attributes | Private Member Functions
itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions > Class Template Reference
Transforms

#include <itkThinPlateR2LogRSplineKernelTransform.h>

+ Inheritance diagram for itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >:
+ Collaboration diagram for itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >:

List of all members.

Public Types

typedef vnl_matrix_fixed
< TScalarType, NDimensions,
NDimensions > 		AMatrixType
typedef vnl_vector_fixed
< TScalarType, NDimensions > 		BMatrixType
typedef vnl_matrix_fixed
< TScalarType, NDimensions, 1 > 		ColumnMatrixType
typedef SmartPointer< const Self > ConstPointer
typedef double CoordRepType
typedef vnl_matrix< TScalarType > DMatrixType
typedef vnl_matrix_fixed
< TScalarType, NDimensions,
NDimensions > 		IMatrixType
typedef
Superclass::InputCovariantVectorType 		InputCovariantVectorType
typedef Superclass::InputPointType InputPointType
typedef Superclass::InputVectorType InputVectorType
typedef vnl_vector_fixed
< TScalarType,
NInputDimensions > 		InputVnlVectorType
typedef
InverseTransformBaseType::Pointer 		InverseTransformBasePointer
typedef TransformBase InverseTransformBaseType
typedef Superclass::JacobianType JacobianType
typedef vnl_matrix< TScalarType > KMatrixType
typedef vnl_matrix< TScalarType > LMatrixType
typedef
Superclass::OutputCovariantVectorType 		OutputCovariantVectorType
typedef Superclass::OutputPointType OutputPointType
typedef
Superclass::OutputVectorType 		OutputVectorType
typedef vnl_vector_fixed
< TScalarType,
NOutputDimensions > 		OutputVnlVectorType
typedef Superclass::ParametersType ParametersType
typedef
Superclass::ParametersValueType 		ParametersValueType
typedef vnl_matrix< TScalarType > PMatrixType
typedef SmartPointer< Self > Pointer
typedef
PointSetType::PointsContainerConstIterator 		PointsConstIterator
typedef
PointSetType::PointsContainer 		PointsContainer
typedef PointSetType::Pointer PointSetPointer
typedef
DefaultStaticMeshTraits
< TScalarType, NDimensions,
NDimensions, TScalarType,
TScalarType > 		PointSetTraitsType
typedef PointSet
< InputPointType, NDimensions,
PointSetTraitsType > 		PointSetType
typedef Superclass::PointsIterator PointsIterator
typedef vnl_matrix_fixed
< TScalarType, 1, NDimensions > 		RowMatrixType
typedef Superclass::ScalarType ScalarType
typedef
ThinPlateR2LogRSplineKernelTransform 		Self
typedef KernelTransform
< TScalarType, NDimensions > 		Superclass
typedef VectorSetType::Pointer VectorSetPointer
typedef itk::VectorContainer
< unsigned long,
InputVectorType > 		VectorSetType
typedef vnl_matrix< TScalarType > WMatrixType
typedef vnl_matrix< TScalarType > YMatrixType

Public Member Functions

unsigned long AddObserver (const EventObject &event, Command *)
unsigned long AddObserver (const EventObject &event, Command *) const
void ComputeWMatrix (void)
virtual ::itk::LightObject::Pointer CreateAnother (void) const
virtual void DebugOff () const
virtual void DebugOn () const
virtual void Delete ()
Command * GetCommand (unsigned long tag)
bool GetDebug () const
virtual VectorSetType * GetDisplacements ()
virtual const ParametersType & GetFixedParameters (void) const
unsigned int GetInputSpaceDimension (void) const
bool GetInverse (Self *) const
virtual InverseTransformBasePointer GetInverseTransform () const
virtual const JacobianType & GetJacobian (const InputPointType &point) const
MetaDataDictionary & GetMetaDataDictionary (void)
const MetaDataDictionary & GetMetaDataDictionary (void) const
virtual unsigned long GetMTime () const
virtual const char * GetNameOfClass () const
virtual unsigned int GetNumberOfParameters (void) const
unsigned int GetOutputSpaceDimension (void) const
virtual const ParametersType & GetParameters (void) const
virtual int GetReferenceCount () const
virtual PointSetType * GetSourceLandmarks ()
virtual double GetStiffness () const
virtual PointSetType * GetTargetLandmarks ()
virtual std::string GetTransformTypeAsString () const
bool HasObserver (const EventObject &event) const
void InvokeEvent (const EventObject &)
void InvokeEvent (const EventObject &) const
virtual bool IsLinear () const
virtual void Modified () const
void Print (std::ostream &os, Indent indent=0) const
virtual void Register () const
void RemoveAllObservers ()
void RemoveObserver (unsigned long tag)
void SetDebug (bool debugFlag) const
virtual void SetFixedParameters (const ParametersType &)
virtual void SetFixedParameters (const ParametersType &)
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void SetParameters (const ParametersType &)
virtual void SetParameters (const ParametersType &)
virtual void SetParametersByValue (const ParametersType &p)
virtual void SetReferenceCount (int)
virtual void SetSourceLandmarks (PointSetType *)
virtual void SetStiffness (double _arg)
virtual void SetTargetLandmarks (PointSetType *)
virtual OutputCovariantVectorType TransformCovariantVector (const InputCovariantVectorType &) const
virtual OutputPointType TransformPoint (const InputPointType &thisPoint) const
virtual OutputVectorType TransformVector (const InputVectorType &) const
virtual OutputVnlVectorType TransformVector (const InputVnlVectorType &) const
virtual void UnRegister () const
virtual void UpdateParameters (void) const

Static Public Member Functions

static void BreakOnError ()
static bool GetGlobalWarningDisplay ()
static void GlobalWarningDisplayOff ()
static void GlobalWarningDisplayOn ()
static Pointer New ()
static void SetGlobalWarningDisplay (bool flag)

Static Public Attributes

static const unsigned int InputSpaceDimension
static const unsigned int OutputSpaceDimension
static const unsigned int SpaceDimension = Superclass::SpaceDimension

Protected Types

typedef Superclass::GMatrixType GMatrixType
typedef int InternalReferenceCountType

Protected Member Functions

 ThinPlateR2LogRSplineKernelTransform ()
virtual ~ThinPlateR2LogRSplineKernelTransform ()
void ComputeD ()
virtual void ComputeDeformationContribution (const InputPointType &inputPoint, OutputPointType &result) const
virtual void ComputeG (const InputVectorType &landmarkVector, GMatrixType &gmatrix) const
void ComputeK ()
void ComputeL ()
void ComputeP ()
virtual const GMatrixType & ComputeReflexiveG (PointsIterator) const
void ComputeY ()
 itkLegacyMacro (virtual const GMatrixType &ComputeG(const InputVectorType &landmarkVector) const )
virtual void PrintHeader (std::ostream &os, Indent indent) const
bool PrintObservers (std::ostream &os, Indent indent) const
void PrintSelf (std::ostream &os, Indent indent) const
virtual void PrintTrailer (std::ostream &os, Indent indent) const
void ReorganizeW (void)

Protected Attributes

AMatrixType m_AMatrix
BMatrixType m_BVector
VectorSetPointer m_Displacements
DMatrixType m_DMatrix
ParametersType m_FixedParameters
GMatrixType m_GMatrix
IMatrixType m_I
JacobianType m_Jacobian
KMatrixType m_KMatrix
LMatrixType m_LMatrix
ParametersType m_Parameters
PMatrixType m_PMatrix
InternalReferenceCountType m_ReferenceCount
SimpleFastMutexLock m_ReferenceCountLock
PointSetPointer m_SourceLandmarks
double m_Stiffness
PointSetPointer m_TargetLandmarks
WMatrixType m_WMatrix
bool m_WMatrixComputed
YMatrixType m_YMatrix

Private Member Functions

 ThinPlateR2LogRSplineKernelTransform (const Self &)
void operator= (const Self &)

Detailed Description

template<class TScalarType, unsigned int NDimensions = 3>
class itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >

This class defines the thin plate spline (TPS) transformation. It is implemented in as straightforward a manner as possible from the IEEE TMI paper by Davis, Khotanzad, Flamig, and Harms, Vol. 16 No. 3 June 1997.

The kernel used in this variant of TPS is $ R^2 log(R) $

Definition at line 36 of file itkThinPlateR2LogRSplineKernelTransform.h.

Member Typedef Documentation

template<class TScalarType, unsigned int NDimensions>
typedef vnl_matrix_fixed<TScalarType,NDimensions,NDimensions> itk::KernelTransform< TScalarType, NDimensions >::AMatrixType
inherited

'A' matrix typedef. Rotational part of the Affine component

Definition at line 216 of file itkKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef vnl_vector_fixed<TScalarType,NDimensions> itk::KernelTransform< TScalarType, NDimensions >::BMatrixType
inherited

'B' matrix typedef. Translational part of the Affine component

Definition at line 219 of file itkKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef vnl_matrix_fixed<TScalarType, NDimensions, 1> itk::KernelTransform< TScalarType, NDimensions >::ColumnMatrixType
inherited

Column matrix typedef.

Definition at line 225 of file itkKernelTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
typedef SmartPointer<const Self> itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::ConstPointer

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 44 of file itkThinPlateR2LogRSplineKernelTransform.h.

typedef double itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::CoordRepType
inherited

Definition at line 94 of file itkTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef vnl_matrix<TScalarType> itk::KernelTransform< TScalarType, NDimensions >::DMatrixType
inherited

'D' matrix typedef. Deformation component

Definition at line 213 of file itkKernelTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
typedef Superclass::GMatrixType itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::GMatrixType
protected

These (rather redundant) typedefs are needed because on SGI, typedefs are not inherited.

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 81 of file itkThinPlateR2LogRSplineKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef vnl_matrix_fixed<TScalarType, NDimensions, NDimensions> itk::KernelTransform< TScalarType, NDimensions >::IMatrixType
inherited

'I' (identity) matrix typedef.

Definition at line 141 of file itkKernelTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
typedef Superclass::InputCovariantVectorType itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::InputCovariantVectorType

Standard covariant vector type for this class

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 70 of file itkThinPlateR2LogRSplineKernelTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
typedef Superclass::InputPointType itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::InputPointType

These (rather redundant) typedefs are needed because on SGI, typedefs are not inherited

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 66 of file itkThinPlateR2LogRSplineKernelTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
typedef Superclass::InputVectorType itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::InputVectorType

Standard vector type for this class.

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 68 of file itkThinPlateR2LogRSplineKernelTransform.h.

typedef vnl_vector_fixed<TScalarType, NInputDimensions> itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::InputVnlVectorType
inherited

Standard vnl_vector type for this class.

Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, itk::ScaleLogarithmicTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.

Definition at line 112 of file itkTransform.h.

typedef int itk::LightObject::InternalReferenceCountType
protectedinherited

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 137 of file itkLightObject.h.

typedef InverseTransformBaseType::Pointer itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::InverseTransformBasePointer
inherited

Reimplemented in itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.

Definition at line 129 of file itkTransform.h.

typedef TransformBase itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::InverseTransformBaseType
inherited

Base inverse transform type. This type should not be changed to the concrete inverse transform type or inheritance would be lost.

Reimplemented in itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.

Definition at line 124 of file itkTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
typedef Superclass::JacobianType itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::JacobianType

Jacobian Type

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 59 of file itkThinPlateR2LogRSplineKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef vnl_matrix<TScalarType> itk::KernelTransform< TScalarType, NDimensions >::KMatrixType
inherited

'K' matrix typedef.

Definition at line 201 of file itkKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef vnl_matrix<TScalarType> itk::KernelTransform< TScalarType, NDimensions >::LMatrixType
inherited

'L' matrix typedef.

Definition at line 198 of file itkKernelTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
typedef Superclass::OutputCovariantVectorType itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::OutputCovariantVectorType

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 71 of file itkThinPlateR2LogRSplineKernelTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
typedef Superclass::OutputPointType itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::OutputPointType

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 67 of file itkThinPlateR2LogRSplineKernelTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
typedef Superclass::OutputVectorType itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::OutputVectorType

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 69 of file itkThinPlateR2LogRSplineKernelTransform.h.

typedef vnl_vector_fixed<TScalarType, NOutputDimensions> itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::OutputVnlVectorType
inherited

Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, itk::ScaleLogarithmicTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.

Definition at line 113 of file itkTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
typedef Superclass::ParametersType itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::ParametersType

Parameters type.

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 56 of file itkThinPlateR2LogRSplineKernelTransform.h.

typedef Superclass::ParametersValueType itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::ParametersValueType
inherited

Type of the input parameters.

Reimplemented from itk::TransformBase.

Reimplemented in itk::ScaleLogarithmicTransform< TScalarType, NDimensions >.

Definition at line 98 of file itkTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef vnl_matrix<TScalarType> itk::KernelTransform< TScalarType, NDimensions >::PMatrixType
inherited

'P' matrix typedef.

Definition at line 204 of file itkKernelTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
typedef SmartPointer<Self> itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::Pointer

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 43 of file itkThinPlateR2LogRSplineKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef PointSetType::PointsContainerConstIterator itk::KernelTransform< TScalarType, NDimensions >::PointsConstIterator
inherited

Definition at line 112 of file itkKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef PointSetType::PointsContainer itk::KernelTransform< TScalarType, NDimensions >::PointsContainer
inherited

Definition at line 108 of file itkKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef PointSetType::Pointer itk::KernelTransform< TScalarType, NDimensions >::PointSetPointer
inherited

Definition at line 107 of file itkKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef DefaultStaticMeshTraits<TScalarType, NDimensions, NDimensions, TScalarType, TScalarType> itk::KernelTransform< TScalarType, NDimensions >::PointSetTraitsType
inherited

PointList typedef. This type is used for maintaining lists of points, specifically, the source and target landmark lists.

Definition at line 104 of file itkKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef PointSet<InputPointType, NDimensions, PointSetTraitsType> itk::KernelTransform< TScalarType, NDimensions >::PointSetType
inherited

Definition at line 106 of file itkKernelTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
typedef Superclass::PointsIterator itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::PointsIterator

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 72 of file itkThinPlateR2LogRSplineKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef vnl_matrix_fixed<TScalarType, 1, NDimensions> itk::KernelTransform< TScalarType, NDimensions >::RowMatrixType
inherited

Row matrix typedef.

Definition at line 222 of file itkKernelTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
typedef Superclass::ScalarType itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::ScalarType

Scalar type.

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 50 of file itkThinPlateR2LogRSplineKernelTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
typedef ThinPlateR2LogRSplineKernelTransform itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::Self

Standard class typedefs.

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 41 of file itkThinPlateR2LogRSplineKernelTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
typedef KernelTransform< TScalarType, NDimensions> itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::Superclass

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 42 of file itkThinPlateR2LogRSplineKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef VectorSetType::Pointer itk::KernelTransform< TScalarType, NDimensions >::VectorSetPointer
inherited

Definition at line 116 of file itkKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef itk::VectorContainer<unsigned long,InputVectorType> itk::KernelTransform< TScalarType, NDimensions >::VectorSetType
inherited

VectorSet typedef.

Definition at line 115 of file itkKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef vnl_matrix<TScalarType> itk::KernelTransform< TScalarType, NDimensions >::WMatrixType
inherited

'W' matrix typedef.

Definition at line 210 of file itkKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
typedef vnl_matrix<TScalarType> itk::KernelTransform< TScalarType, NDimensions >::YMatrixType
inherited

'Y' matrix typedef.

Definition at line 207 of file itkKernelTransform.h.

Constructor & Destructor Documentation

template<class TScalarType , unsigned int NDimensions = 3>
itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::ThinPlateR2LogRSplineKernelTransform ( )
inlineprotected

Definition at line 76 of file itkThinPlateR2LogRSplineKernelTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
virtual itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::~ThinPlateR2LogRSplineKernelTransform ( )
inlineprotectedvirtual

Definition at line 77 of file itkThinPlateR2LogRSplineKernelTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::ThinPlateR2LogRSplineKernelTransform ( const Self &  )
private

Member Function Documentation

unsigned long itk::Object::AddObserver ( const EventObject &  event,
Command *  cmd 
)
inherited

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

Definition at line 389 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), itk::ProgressAccumulator::RegisterInternalFilter(), otb::ImageFileWriter< TInputImage >::Update(), and otb::WriterWatcherBase::WriterWatcherBase().

unsigned long itk::Object::AddObserver ( const EventObject &  event,
Command *  cmd 
) const
inherited

Definition at line 401 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

void itk::LightObject::BreakOnError ( )
staticinherited

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

Definition at line 149 of file itkLightObject.cxx.

template<class TScalarType , unsigned int NDimensions>
void itk::KernelTransform< TScalarType, NDimensions >::ComputeD ( void  )
protectedinherited

Compute displacements $ q_i - p_i $.

Definition at line 177 of file itkKernelTransform.txx.

References itk::VectorContainer< TElementIdentifier, TElement >::Iterator::Value().

template<class TScalarType , unsigned int NDimensions>
void itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::ComputeDeformationContribution ( const InputPointType &  inputPoint,
OutputPointType &  result 
) const
protectedvirtual

Compute the contribution of the landmarks weighted by the kernel funcion to the global deformation of the space

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 58 of file itkThinPlateR2LogRSplineKernelTransform.txx.

References itk::Vector< T, NVectorDimension >::GetNorm().

template<class TScalarType , unsigned int NDimensions>
void itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::ComputeG ( const InputVectorType &  landmarkVector,
GMatrixType &  gmatrix 
) const
protectedvirtual 
 Compute G(x)
For the thin plate spline, this is:
G(x) = r(x)*I

$ G(x) = r(x)^2 log(r(x) ) *I $ where r(x) = Euclidean norm = sqrt[x1^2 + x2^2 + x3^2]

\[ r(x) = \sqrt{ x_1^2 + x_2^2 + x_3^2 } \]

I = identity matrix.

This method has been deprecated as of ITK 3.6. Please use the method: void ComputeG(vector,gmatrix) instead.

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 32 of file itkThinPlateR2LogRSplineKernelTransform.txx.

template<class TScalarType , unsigned int NDimensions>
void itk::KernelTransform< TScalarType, NDimensions >::ComputeK ( void  )
protectedinherited

Compute K matrix.

Definition at line 253 of file itkKernelTransform.txx.

template<class TScalarType , unsigned int NDimensions>
void itk::KernelTransform< TScalarType, NDimensions >::ComputeL ( void  )
protectedinherited

Compute L matrix.

Definition at line 222 of file itkKernelTransform.txx.

template<class TScalarType , unsigned int NDimensions>
void itk::KernelTransform< TScalarType, NDimensions >::ComputeP ( )
protectedinherited

Compute P matrix.

Definition at line 304 of file itkKernelTransform.txx.

template<class TScalarType , unsigned int NDimensions>
const KernelTransform< TScalarType, NDimensions >::GMatrixType & itk::KernelTransform< TScalarType, NDimensions >::ComputeReflexiveG ( PointsIterator  ) const
protectedvirtualinherited

Compute a G(x) for a point to itself (i.e. for the block diagonal elements of the matrix K. Parameter indicates for which landmark the reflexive G is to be computed. The default implementation for the reflexive contribution is a diagonal matrix where the diagonal elements are the stiffness of the spline.

Warning:
this method is not thread-safe. However this method is called only through ComputeWMatrix() that is itself normally called from a single thread during the initialization of the Transform.

Definition at line 129 of file itkKernelTransform.txx.

template<class TScalarType , unsigned int NDimensions>
void itk::KernelTransform< TScalarType, NDimensions >::ComputeWMatrix ( void  )
inherited

Compute W matrix.

Definition at line 203 of file itkKernelTransform.txx.

template<class TScalarType , unsigned int NDimensions>
void itk::KernelTransform< TScalarType, NDimensions >::ComputeY ( void  )
protectedinherited

Compute Y matrix.

Definition at line 333 of file itkKernelTransform.txx.

References itk::VectorContainer< TElementIdentifier, TElement >::ConstIterator::Value().

template<class TScalarType , unsigned int NDimensions = 3>
virtual::itk::LightObject::Pointer itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

void itk::Object::DebugOff ( ) const
virtualinherited

Turn debugging output off.

Definition at line 253 of file itkObject.cxx.

void itk::Object::DebugOn ( ) const
virtualinherited

Turn debugging output on.

Definition at line 242 of file itkObject.cxx.

void itk::LightObject::Delete ( )
virtualinherited

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

Delete a itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C++ delete method will not work with reference counting.

Definition at line 88 of file itkLightObject.cxx.

Command * itk::Object::GetCommand ( unsigned long  tag)
inherited

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

Definition at line 414 of file itkObject.cxx.

References itk::Object::GetCommand(), and NULL.

Referenced by itk::Object::GetCommand().

bool itk::Object::GetDebug ( ) const
inherited

Get the value of the debug flag.

Definition at line 264 of file itkObject.cxx.

Referenced by otb::ogr::ImageReference< double >::GetDebug().

template<class TScalarType, unsigned int NDimensions>
virtual VectorSetType* itk::KernelTransform< TScalarType, NDimensions >::GetDisplacements ( )
virtualinherited

Get the displacements list, which we will denote $ d $, where $ d_i = q_i - p_i $.

template<class TScalarType , unsigned int NDimensions>
const KernelTransform< TScalarType, NDimensions >::ParametersType & itk::KernelTransform< TScalarType, NDimensions >::GetFixedParameters ( void  ) const
virtualinherited

Get Transform Fixed Parameters - Gets the Target Landmarks

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 584 of file itkKernelTransform.txx.

bool itk::Object::GetGlobalWarningDisplay ( )
staticinherited

Get the value of the global debug output control flag.

Definition at line 381 of file itkObject.cxx.

unsigned int itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::GetInputSpaceDimension ( void  ) const
inlinevirtualinherited

Get the size of the input space

Implements itk::TransformBase.

Definition at line 86 of file itkTransform.h.

bool itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::GetInverse ( Self *  ) const
inlineinherited

Returns a boolean indicating whether it is possible or not to compute the inverse of this current Transform. If it is possible, then the inverse of the transform is returned in the inverseTransform variable passed by the user. The inverse is recomputed if this current transform has been modified. This method is intended to be overriden by derived classes.

Reimplemented in itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.

Definition at line 237 of file itkTransform.h.

virtual InverseTransformBasePointer itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::GetInverseTransform ( ) const
inlinevirtualinherited

Return an inverse of this transform. If the inverse has not been implemented, return NULL. The type of the inverse transform does not necessarily need to match the type of the forward transform. This allows one to return a numeric inverse transform instead.

Reimplemented in itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.

Definition at line 245 of file itkTransform.h.

template<class TScalarType , unsigned int NDimensions>
const KernelTransform< TScalarType, NDimensions >::JacobianType & itk::KernelTransform< TScalarType, NDimensions >::GetJacobian ( const InputPointType &  point) const
virtualinherited

Compute the Jacobian Matrix of the transformation at one point

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 445 of file itkKernelTransform.txx.

References itk::Array2D< TValueType >::Fill().

MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  )
inherited
Returns:
A reference to this objects MetaDataDictionary.
Warning:
This reference may be changed.

Reimplemented in otb::ImageMetadataInterfaceBase.

Definition at line 532 of file itkObject.cxx.

References NULL.

Referenced by otb::RenderingImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData(), itk::Brains2MaskImageIO::CanReadFile(), otb::DataNode< TPrecision, VDimension, TValuePrecision >::CopyFieldList(), otb::VectorImage< TPixel, VImageDimension >::CopyInformation(), otb::Image< TPixel, VImageDimension >::CopyInformation(), itk::GDCMImageIO::GetBodyPart(), itk::GDCMImageIO::GetInstitution(), itk::GDCMImageIO::GetManufacturer(), itk::GDCMImageIO::GetModality(), itk::GDCMImageIO::GetModel(), itk::GDCMImageIO::GetNumberOfSeriesInStudy(), itk::GDCMImageIO::GetNumberOfStudyRelatedSeries(), itk::GDCMImageIO::GetPatientAge(), itk::GDCMImageIO::GetPatientDOB(), itk::GDCMImageIO::GetPatientID(), itk::GDCMImageIO::GetPatientName(), itk::GDCMImageIO::GetPatientSex(), itk::GDCMImageIO::GetScanOptions(), itk::GDCMImageIO::GetStudyDate(), itk::GDCMImageIO::GetStudyDescription(), itk::GDCMImageIO::GetStudyID(), itk::GDCMImageIO::GetValueFromTag(), otb::GDALImageIO::InternalReadImageInformation(), itk::GDCMImageIO::InternalReadImageInformation(), otb::GDALImageIO::InternalWriteImageInformation(), otb::RAMDrivenAdaptativeStreamingManager< TImage >::PrepareStreaming(), itk::DICOMImageIO2::Read(), itk::DICOMImageIO2::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), otb::JPEG2000ImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), itk::MRCImageIO::ReadImageInformation(), itk::IPLCommonImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), otb::ImageMetadataInterfaceBase::SetImage(), itk::NiftiImageIO::SetImageIOMetadataFromNIfTI(), otb::VectorDataToLabelImageFilter< TVectorData, TOutputImage >::SetOutputParametersFromImage(), itk::NrrdImageIO::Write(), itk::GDCMImageIO::Write(), and itk::PolygonGroupSpatialObjectXMLFileWriter::WriteFile().

const MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  ) const
inherited
Returns:
A constant reference to this objects MetaDataDictionary.

Reimplemented in otb::ImageMetadataInterfaceBase.

Definition at line 543 of file itkObject.cxx.

References NULL.

unsigned long itk::Object::GetMTime ( void  ) const
virtualinherited

Return this objects modified time.

Return the modification for this object.

Reimplemented in itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::SpatialObject< TDimension >, itk::SpatialObject< 3 >, itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::MeshSpatialObject< TMesh >, and itk::SceneSpatialObject< TSpaceDimension >.

Definition at line 286 of file itkObject.cxx.

Referenced by itk::DeformationFieldSource< TOutputImage >::GetMTime(), itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >::GetMTime(), itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< TDimension >::GetMTime(), itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime(), otb::Function::NoStretchRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), itk::VTKImageExportBase::PipelineModifiedCallback(), and itk::ProcessObject::UpdateOutputInformation().

template<class TScalarType , unsigned int NDimensions = 3>
virtual const char* itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

virtual unsigned int itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::GetNumberOfParameters ( void  ) const
inlinevirtualinherited

Return the number of parameters that completely define the Transfom

Implements itk::TransformBase.

Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, and itk::TranslationTransform< TScalarType, NDimensions >.

Definition at line 227 of file itkTransform.h.

unsigned int itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::GetOutputSpaceDimension ( void  ) const
inlinevirtualinherited

Get the size of the output space

Implements itk::TransformBase.

Definition at line 89 of file itkTransform.h.

template<class TScalarType , unsigned int NDimensions>
const KernelTransform< TScalarType, NDimensions >::ParametersType & itk::KernelTransform< TScalarType, NDimensions >::GetParameters ( void  ) const
virtualinherited

Get the Transformation Parameters - Gets the Source Landmarks

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 570 of file itkKernelTransform.txx.

virtual int itk::LightObject::GetReferenceCount ( ) const
inlinevirtualinherited

Gets the reference count on this object.

Definition at line 105 of file itkLightObject.h.

template<class TScalarType, unsigned int NDimensions>
virtual PointSetType* itk::KernelTransform< TScalarType, NDimensions >::GetSourceLandmarks ( )
virtualinherited

Get the source landmarks list, which we will denote $ p $.

template<class TScalarType, unsigned int NDimensions>
virtual double itk::KernelTransform< TScalarType, NDimensions >::GetStiffness ( ) const
virtualinherited
template<class TScalarType, unsigned int NDimensions>
virtual PointSetType* itk::KernelTransform< TScalarType, NDimensions >::GetTargetLandmarks ( )
virtualinherited

Get the target landmarks list, which we will denote $ q $.

virtual std::string itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::GetTransformTypeAsString ( ) const
virtualinherited

Generate a platform independant name

GenerateName

Implements itk::TransformBase.

static void itk::Object::GlobalWarningDisplayOff ( )
inlinestaticinherited

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

Referenced by itk::OutputWindow::DisplayText(), itk::Win32OutputWindow::PromptText(), and itk::Win32OutputWindow::WndProc().

static void itk::Object::GlobalWarningDisplayOn ( )
inlinestaticinherited

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

bool itk::Object::HasObserver ( const EventObject &  event) const
inherited

Return true if an observer is registered for this event.

Definition at line 467 of file itkObject.cxx.

void itk::Object::InvokeEvent ( const EventObject &  event)
inherited

Call Execute on all the Commands observing this event id.

Definition at line 446 of file itkObject.cxx.

Referenced by otb::Wrapper::Application::AddProcess(), itk::ParallelSparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::IterateThreaderCallback(), and itk::VTKImageExportBase::UpdateDataCallback().

void itk::Object::InvokeEvent ( const EventObject &  event) const
inherited

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

Definition at line 457 of file itkObject.cxx.

template<class TScalarType, unsigned int NDimensions>
virtual bool itk::KernelTransform< TScalarType, NDimensions >::IsLinear ( ) const
inlinevirtualinherited

This transform is not linear, because the transformation of a linear combination of points is not equal to the linear combination of the transformations of individual points

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 172 of file itkKernelTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::itkLegacyMacro ( virtual const GMatrixType &ComputeG(const InputVectorType &landmarkVector)  const)
protected
Deprecated:
in ITK 3.6, please use void ComputeG(vector,gmatrix) instead.

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

void itk::Object::Modified ( void  ) const
virtualinherited

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Make sure this object's modified time is greater than all others.

Reimplemented in otb::SVMModel< TValue, TLabel >, otb::SurfaceAdjacencyEffect6SCorrectionSchemeFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, otb::GenericRSTransform< TScalarType, NInputDimensions, NOutputDimensions >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, TBufferConverter >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, MeanShift::VectorBufferConverter >, otb::GCPsToRPCSensorModelImageFilter< TImage >, otb::Polygon< TValue >, otb::ImageRegionAdaptativeSplitter< VImageDimension >, otb::GenericInterpolateImageFunction< TInputImage, TFunction, TBoundaryCondition, TCoordRep >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, otb::PolyLineParametricPathWithValue< TValue, VDimension >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, otb::PolyLineParametricPathWithValue< TValue, 2 >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, otb::PhysicalToRPCSensorModelImageFilter< TImage >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, TFilter >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, RankImageFilter< TInputImage, TInputImage, FlatStructuringElement< ::itk::GetImageDimension< TInputImage >::ImageDimension > > >, itk::NormalizeImageFilter< TInputImage, TOutputImage >, and otb::StatisticsXMLFileReader< TMeasurementVector >.

Definition at line 297 of file itkObject.cxx.

Referenced by otb::Wrapper::InputImageListParameter::AddFromFileName(), otb::Wrapper::InputVectorDataListParameter::AddFromFileName(), otb::Wrapper::InputImageListParameter::AddImage(), otb::Wrapper::InputImageListParameter::AddNullElement(), otb::Wrapper::InputVectorDataListParameter::AddNullElement(), otb::Wrapper::StringListParameter::AddNullElement(), otb::VectorDataModel::AddPointToGeometry(), otb::Wrapper::InputVectorDataListParameter::AddVectorData(), otb::Wrapper::InputImageListParameter::ClearValue(), otb::Wrapper::InputVectorDataListParameter::ClearValue(), otb::VectorDataModel::DeleteGeometry(), otb::VectorDataModel::EndGeometry(), otb::Wrapper::InputImageListParameter::Erase(), otb::Wrapper::InputVectorDataListParameter::Erase(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), otb::ImageWidget< TInputImage >::LinearInterpolationOff(), otb::ImageWidget< TInputImage >::LinearInterpolationOn(), itk::MatrixOffsetTransformBase< TScalarType, NInputDimensions, NOutputDimensions >::MatrixOffsetTransformBase(), otb::ogr::ImageReference< double >::Modified(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetAutoMinMax(), otb::BlendingImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetBlendingFunction(), otb::ImageLayerGenerator< TImageLayer >::SetBlendingFunction(), otb::TileMapImageIO::SetCacheDirectory(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetChannelList(), itk::LBFGSBOptimizer::SetCostFunction(), itk::MINC2ImageIO::SetDimensionName(), itk::ImageIOBase::SetDimensions(), itk::ImageIOBase::SetDirection(), otb::Wrapper::InputImageListParameter::SetImageList(), itk::GDCMSeriesFileNames::SetInputDirectory(), otb::HistogramStatisticsFunction< TInputHistogram, TOutput >::SetInputHistogram(), otb::ImageToGenericRSOutputParameters< TImage >::SetInputKeywordList(), otb::Wrapper::InputVectorDataListParameter::SetListFromFileName(), otb::Wrapper::InputImageListParameter::SetListFromFileName(), otb::Function::RenderingFunction< TPixel, TRGBPixel >::SetListSample(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), otb::Wrapper::InputImageListParameter::SetNthFileName(), otb::Wrapper::InputVectorDataListParameter::SetNthFileName(), itk::ImageIOBase::SetNumberOfDimensions(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ImageIOBase::SetOrigin(), otb::ImageToGenericRSOutputParameters< TImage >::SetOutputProjectionRef(), otb::MapProjectionAdapter::SetParameter(), otb::Function::GaussianRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetParameters(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetParameters(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), otb::ImageLayerGenerator< TImageLayer >::SetRenderingFunction(), otb::RenderingImageFilter< TInputImage, TOutputImage >::SetRenderingFunction(), itk::ImageIOBase::SetSpacing(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation(), otb::Wrapper::OutputFilenameParameter::SetValue(), otb::Wrapper::InputFilenameParameter::SetValue(), otb::Wrapper::ListViewParameter::SetValue(), otb::Wrapper::ChoiceParameter::SetValue(), otb::Wrapper::InputVectorDataListParameter::SetVectorDataList(), and otb::MapProjectionAdapter::SetWkt().

template<class TScalarType , unsigned int NDimensions = 3>
static Pointer itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::New ( )
static

New macro for creation of through a Smart Pointer

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

template<class TScalarType , unsigned int NDimensions = 3>
void itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::operator= ( const Self &  )
private

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

void itk::LightObject::Print ( std::ostream &  os,
Indent  indent = 0 
) const
inherited

Cause the object to print itself out.

Avoid DLL boundary problems. This function will be common to all itk objects. It just calls the header/self/trailer virtual print methods, which can be overriden by subclasses (any itk object).

Definition at line 135 of file itkLightObject.cxx.

References itk::Indent::GetNextIndent().

Referenced by itk::operator<<().

void itk::LightObject::PrintHeader ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Define a default print header for all objects.

Definition at line 320 of file itkLightObject.cxx.

bool itk::Object::PrintObservers ( std::ostream &  os,
Indent  indent 
) const
protectedinherited

Definition at line 478 of file itkObject.cxx.

template<class TScalarType , unsigned int NDimensions>
void itk::KernelTransform< TScalarType, NDimensions >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Chaining method to print an object's instance variables, as well as its superclasses.

Reimplemented from itk::Object.

Reimplemented in itk::ElasticBodySplineKernelTransform< TScalarType, NDimensions >, and itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >.

Definition at line 612 of file itkKernelTransform.txx.

References itk::Indent::GetNextIndent().

void itk::LightObject::PrintTrailer ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Define a default print trailer for all objects.

Definition at line 331 of file itkLightObject.cxx.

void itk::Object::Register ( ) const
virtualinherited

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

Definition at line 309 of file itkObject.cxx.

Referenced by itk::ObjectFactoryBase::RegisterFactory().

void itk::Object::RemoveAllObservers ( )
inherited

Remove all observers .

Definition at line 435 of file itkObject.cxx.

void itk::Object::RemoveObserver ( unsigned long  tag)
inherited

Remove the observer with this tag value.

Definition at line 425 of file itkObject.cxx.

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), and otb::ImageFileWriter< TInputImage >::Update().

template<class TScalarType , unsigned int NDimensions>
void itk::KernelTransform< TScalarType, NDimensions >::ReorganizeW ( void  )
protectedinherited

Reorganize the components of W into D (deformable), A (rotation part of affine) and B (translational part of affine ) components.

Warning:
This method release the memory of the W Matrix

Definition at line 367 of file itkKernelTransform.txx.

void itk::Object::SetDebug ( bool  debugFlag) const
inherited

Set the value of the debug flag. A non-zero value turns debugging on.

Definition at line 275 of file itkObject.cxx.

template<class TScalarType , unsigned int NDimensions>
void itk::KernelTransform< TScalarType, NDimensions >::SetFixedParameters ( const ParametersType &  parameters)
virtualinherited

Set Transform Fixed Parameters: To support the transform file writer this function was added to set the target landmarks similar to the SetParameters function setting the source landmarks

Definition at line 510 of file itkKernelTransform.txx.

virtual void itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::SetFixedParameters ( const ParametersType &  )
inlinevirtualinherited

Set the fixed parameters and update internal transformation.

Implements itk::TransformBase.

Reimplemented in itk::TranslationTransform< TScalarType, NDimensions >.

Definition at line 178 of file itkTransform.h.

void itk::Object::SetGlobalWarningDisplay ( bool  val)
staticinherited

This is a global flag that controls whether any debug, warning or error messages are displayed.

Set the value of the global debug output control flag.

Definition at line 370 of file itkObject.cxx.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary &  rhs)
inherited
Returns:
Set the MetaDataDictionary

Reimplemented in otb::ImageMetadataInterfaceBase.

Definition at line 554 of file itkObject.cxx.

References NULL.

Referenced by otb::VectorImage< TPixel, VImageDimension >::CopyInformation(), and otb::Image< TPixel, VImageDimension >::CopyInformation().

template<class TScalarType , unsigned int NDimensions>
void itk::KernelTransform< TScalarType, NDimensions >::SetParameters ( const ParametersType &  parameters)
virtualinherited

Set the Transformation Parameters and update the internal transformation. The parameters represent the source landmarks. Each landmark point is represented by NDimensions doubles. All the landmarks are concatenated to form one flat Array<double>.

Definition at line 471 of file itkKernelTransform.txx.

virtual void itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::SetParameters ( const ParametersType &  )
inlinevirtualinherited

Set the transformation parameters and update internal transformation. SetParameters gives the transform the option to set it's parameters by keeping a reference to the parameters, or by copying. To force the transform to copy it's parameters call SetParametersByValue.

See also:
SetParametersByValue

Implements itk::TransformBase.

Reimplemented in itk::TranslationTransform< TScalarType, NDimensions >.

Definition at line 155 of file itkTransform.h.

virtual void itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::SetParametersByValue ( const ParametersType &  p)
inlinevirtualinherited

Set the transformation parameters and update internal transformation. This method forces the transform to copy the parameters. The default implementation is to call SetParameters. This call must be overridden if the transform normally implements SetParameters by keeping a reference to the parameters.

See also:
SetParameters

Implements itk::TransformBase.

Definition at line 165 of file itkTransform.h.

void itk::Object::SetReferenceCount ( int  ref)
virtualinherited

Sets the reference count (use with care)

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 347 of file itkObject.cxx.

template<class TScalarType , unsigned int NDimensions>
void itk::KernelTransform< TScalarType, NDimensions >::SetSourceLandmarks ( PointSetType *  landmarks)
virtualinherited

Set the source landmarks list.

Definition at line 65 of file itkKernelTransform.txx.

template<class TScalarType, unsigned int NDimensions>
virtual void itk::KernelTransform< TScalarType, NDimensions >::SetStiffness ( double  _arg)
virtualinherited

Stiffness of the spline. A stiffness of zero results in the standard interpolating spline. A non-zero stiffness allows the spline to approximate rather than interpolate the landmarks. Stiffness values are usually rather small, typically in the range of 0.001 to 0.1. The approximating spline formulation is based on the short paper by R. Sprengel, K. Rohr, H. Stiehl. "Thin-Plate Spline Approximation for Image Registration". In 18th International Conference of the IEEE Engineering in Medicine and Biology Society. 1996.

template<class TScalarType , unsigned int NDimensions>
void itk::KernelTransform< TScalarType, NDimensions >::SetTargetLandmarks ( PointSetType *  landmarks)
virtualinherited

Set the target landmarks list.

Definition at line 83 of file itkKernelTransform.txx.

virtual OutputCovariantVectorType itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::TransformCovariantVector ( const InputCovariantVectorType &  ) const
inlinevirtualinherited

Method to transform a CovariantVector.

Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, itk::ScaleTransform< TScalarType, NDimensions >, itk::IdentityTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.

Definition at line 144 of file itkTransform.h.

template<class TScalarType , unsigned int NDimensions>
KernelTransform< TScalarType, NDimensions >::OutputPointType itk::KernelTransform< TScalarType, NDimensions >::TransformPoint ( const InputPointType &  thisPoint) const
virtualinherited

Compute the position of point in the new space

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 409 of file itkKernelTransform.txx.

References itk::FixedArray< TValueType, VLength >::Fill().

virtual OutputVectorType itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVectorType &  ) const
inlinevirtualinherited

Method to transform a vector.

Definition at line 136 of file itkTransform.h.

virtual OutputVnlVectorType itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVnlVectorType &  ) const
inlinevirtualinherited

Method to transform a vnl_vector.

Definition at line 140 of file itkTransform.h.

void itk::Object::UnRegister ( ) const
virtualinherited

Decrease the reference count (release by another object).

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 324 of file itkObject.cxx.

Referenced by itk::Object::New(), and itk::ObjectFactoryBase::UnRegisterFactory().

template<class TScalarType , unsigned int NDimensions>
void itk::KernelTransform< TScalarType, NDimensions >::UpdateParameters ( void  ) const
virtualinherited

Update the Parameters array from the landmarks corrdinates.

Definition at line 543 of file itkKernelTransform.txx.

Member Data Documentation

const unsigned int itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::InputSpaceDimension
staticinherited

Dimension of the domain space.

Reimplemented in itk::IdentityTransform< TScalarType, NDimensions >.

Definition at line 82 of file itkTransform.h.

template<class TScalarType, unsigned int NDimensions>
AMatrixType itk::KernelTransform< TScalarType, NDimensions >::m_AMatrix
protectedinherited

Rotatinoal/Shearing part of the Affine component of the Transformation

Definition at line 314 of file itkKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
BMatrixType itk::KernelTransform< TScalarType, NDimensions >::m_BVector
protectedinherited

Translational part of the Affine component of the Transformation

Definition at line 317 of file itkKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
VectorSetPointer itk::KernelTransform< TScalarType, NDimensions >::m_Displacements
protectedinherited

The list of displacements. d[i] = q[i] - p[i];

Definition at line 289 of file itkKernelTransform.h.

Referenced by itk::KernelTransform< TScalarType, NDimensions >::KernelTransform().

template<class TScalarType, unsigned int NDimensions>
DMatrixType itk::KernelTransform< TScalarType, NDimensions >::m_DMatrix
protectedinherited

The Deformation matrix. This is an auxiliary matrix that will hold the Deformation (non-affine) part of the transform. Those are the coefficients that will multiply the Kernel function

Definition at line 311 of file itkKernelTransform.h.

ParametersType itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::m_FixedParameters
mutableprotectedinherited

Definition at line 272 of file itkTransform.h.

template<class TScalarType, unsigned int NDimensions>
GMatrixType itk::KernelTransform< TScalarType, NDimensions >::m_GMatrix
mutableprotectedinherited

The G matrix. It is made mutable because m_GMatrix was made an ivar only to avoid copying the matrix at return time

Definition at line 322 of file itkKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
IMatrixType itk::KernelTransform< TScalarType, NDimensions >::m_I
protectedinherited

Identity matrix.

Definition at line 328 of file itkKernelTransform.h.

Referenced by itk::KernelTransform< TScalarType, NDimensions >::KernelTransform().

JacobianType itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::m_Jacobian
mutableprotectedinherited

Definition at line 273 of file itkTransform.h.

Referenced by itk::TranslationTransform< TScalarType, NDimensions >::TranslationTransform().

template<class TScalarType, unsigned int NDimensions>
KMatrixType itk::KernelTransform< TScalarType, NDimensions >::m_KMatrix
protectedinherited

The K matrix.

Definition at line 295 of file itkKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
LMatrixType itk::KernelTransform< TScalarType, NDimensions >::m_LMatrix
protectedinherited

The L matrix.

Definition at line 292 of file itkKernelTransform.h.

ParametersType itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::m_Parameters
mutableprotectedinherited

Definition at line 271 of file itkTransform.h.

template<class TScalarType, unsigned int NDimensions>
PMatrixType itk::KernelTransform< TScalarType, NDimensions >::m_PMatrix
protectedinherited

The P matrix.

Definition at line 298 of file itkKernelTransform.h.

InternalReferenceCountType itk::LightObject::m_ReferenceCount
mutableprotectedinherited

Number of uses of this object by other objects.

Definition at line 141 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock
mutableprotectedinherited

Mutex lock to protect modification to the reference count

Definition at line 144 of file itkLightObject.h.

template<class TScalarType, unsigned int NDimensions>
PointSetPointer itk::KernelTransform< TScalarType, NDimensions >::m_SourceLandmarks
protectedinherited

The list of source landmarks, denoted 'p'.

Definition at line 331 of file itkKernelTransform.h.

Referenced by itk::KernelTransform< TScalarType, NDimensions >::KernelTransform().

template<class TScalarType, unsigned int NDimensions>
double itk::KernelTransform< TScalarType, NDimensions >::m_Stiffness
protectedinherited

Stiffness parameter

Definition at line 285 of file itkKernelTransform.h.

Referenced by itk::KernelTransform< TScalarType, NDimensions >::KernelTransform().

template<class TScalarType, unsigned int NDimensions>
PointSetPointer itk::KernelTransform< TScalarType, NDimensions >::m_TargetLandmarks
protectedinherited

The list of target landmarks, denoted 'q'.

Definition at line 334 of file itkKernelTransform.h.

Referenced by itk::KernelTransform< TScalarType, NDimensions >::KernelTransform().

template<class TScalarType, unsigned int NDimensions>
WMatrixType itk::KernelTransform< TScalarType, NDimensions >::m_WMatrix
protectedinherited

The W matrix.

Definition at line 304 of file itkKernelTransform.h.

template<class TScalarType, unsigned int NDimensions>
bool itk::KernelTransform< TScalarType, NDimensions >::m_WMatrixComputed
protectedinherited

Has the W matrix been computed?

Definition at line 325 of file itkKernelTransform.h.

Referenced by itk::KernelTransform< TScalarType, NDimensions >::KernelTransform().

template<class TScalarType, unsigned int NDimensions>
YMatrixType itk::KernelTransform< TScalarType, NDimensions >::m_YMatrix
protectedinherited

The Y matrix.

Definition at line 301 of file itkKernelTransform.h.

const unsigned int itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::OutputSpaceDimension
staticinherited

Reimplemented in itk::IdentityTransform< TScalarType, NDimensions >.

Definition at line 83 of file itkTransform.h.

template<class TScalarType , unsigned int NDimensions = 3>
const unsigned int itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >::SpaceDimension = Superclass::SpaceDimension
static

Dimension of the domain space.

Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 62 of file itkThinPlateR2LogRSplineKernelTransform.h.

The documentation for this class was generated from the following files:
Generated at Sun Feb 3 2013 02:43:07 for Orfeo Toolbox with doxygen 1.8.1.1