itkLevelSetNeighborhoodExtractor.txx

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/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    $RCSfile: itkLevelSetNeighborhoodExtractor.txx,v $
  Language:  C++
  Date:      $Date: 2009-01-24 20:02:58 $
  Version:   $Revision: 1.31 $

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even 
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/
#ifndef __itkLevelSetNeighborhoodExtractor_txx
#define __itkLevelSetNeighborhoodExtractor_txx

#include "itkLevelSetNeighborhoodExtractor.h"
#include "itkImageRegionConstIterator.h"
#include "itkImageRegionIterator.h"
#include "itkNumericTraits.h"
#include "vnl/vnl_math.h"

#include <algorithm>

namespace itk
{

template <class TLevelSet>
LevelSetNeighborhoodExtractor<TLevelSet>
::LevelSetNeighborhoodExtractor()
{
  m_LevelSetValue = 0.0;
  m_InsidePoints = 0;
  m_OutsidePoints = 0;
  m_InputLevelSet = 0;  

  m_LargeValue = NumericTraits<PixelType>::max();
  m_NodesUsed.resize( SetDimension );

  m_NarrowBanding = false;
  m_NarrowBandwidth = 12.0;
  m_InputNarrowBand = 0;
  for (unsigned int i=0; i < SetDimension; ++i)
    {
    m_ImageSize[i] = 0;
    }
}

/*
 *
 */
template <class TLevelSet>
void
LevelSetNeighborhoodExtractor<TLevelSet>
::PrintSelf(std::ostream& os, Indent indent) const
{
  Superclass::PrintSelf(os, indent);
  os << indent << "Input level set: " << m_InputLevelSet.GetPointer();
  os << std::endl;
  os << indent << "Level set value: " << m_LevelSetValue << std::endl;
  os << indent << "Narrow bandwidth: " << m_NarrowBandwidth << std::endl;
  os << indent << "Narrowbanding: " << m_NarrowBanding << std::endl;
  os << indent << "Input narrow band: ";
  os << m_InputNarrowBand.GetPointer() << std::endl;
}

/*
 *
 */
template <class TLevelSet>
void
LevelSetNeighborhoodExtractor<TLevelSet>
::SetInputNarrowBand(
  NodeContainer * ptr )
{
  if( m_InputNarrowBand != ptr )
    {
    m_InputNarrowBand = ptr;
    this->Modified();
    }
}


template <class TLevelSet>
void
LevelSetNeighborhoodExtractor<TLevelSet>
::Locate()
{
  this->GenerateData();
}


template <class TLevelSet>
void
LevelSetNeighborhoodExtractor<TLevelSet>
::Initialize()
{
  // create new emtpy points containers
  m_InsidePoints = NodeContainer::New();
  m_OutsidePoints = NodeContainer::New();

  typename TLevelSet::SizeType size =
    m_InputLevelSet->GetBufferedRegion().GetSize();

  for( unsigned int j = 0; j < SetDimension; j++ )
    {
    m_ImageSize[j] = (signed long) size[j];
    }

}

/*
 *
 */
template <class TLevelSet>
void
LevelSetNeighborhoodExtractor<TLevelSet>
::GenerateData()
{
  if( !m_InputLevelSet ) 
    { 
    itkExceptionMacro( << "Input level set is NULL" );
    }

  this->Initialize();


  if( m_NarrowBanding )
    {
    this->GenerateDataNarrowBand();
    }
  else
    {
    this->GenerateDataFull();
    }

  itkDebugMacro(<< "No. inside points: " << m_InsidePoints->Size());
  itkDebugMacro(<< "No. outside points: " << m_OutsidePoints->Size());

}


/*
 *
 */
template <class TLevelSet>
void
LevelSetNeighborhoodExtractor<TLevelSet>
::GenerateDataFull()
{

  typedef ImageRegionConstIterator<LevelSetImageType> InputConstIterator;

  InputConstIterator inIt ( m_InputLevelSet,
                            m_InputLevelSet->GetBufferedRegion() );

  IndexType inputIndex;

  unsigned long totalPixels  = 
    m_InputLevelSet->GetBufferedRegion().GetNumberOfPixels();
  unsigned long updateVisits = totalPixels / 10;
  if ( updateVisits < 1) { updateVisits = 1; }

  
  unsigned long i;
  for ( i = 0; !inIt.IsAtEnd(); ++inIt, ++i )
    {
    // update progress
    if ( !(i % updateVisits) )
      {
      this->UpdateProgress( (float) i/ (float) totalPixels );
      }

    inputIndex = inIt.GetIndex();
    this->CalculateDistance( inputIndex );
    }

}

template <class TLevelSet>
void
LevelSetNeighborhoodExtractor<TLevelSet>
::GenerateDataNarrowBand()
{
  if ( !m_InputNarrowBand )
    {
    itkExceptionMacro( << "InputNarrowBand has not been set" );
    }

  typename NodeContainer::ConstIterator pointsIter;
  typename NodeContainer::ConstIterator pointsEnd;

  pointsIter = m_InputNarrowBand->Begin();
  pointsEnd = m_InputNarrowBand->End();
  NodeType node;
  double maxValue = m_NarrowBandwidth / 2.0;


  unsigned long totalPixels  = m_InputNarrowBand->Size();
  unsigned long updateVisits = totalPixels / 10;
  if ( updateVisits < 1) { updateVisits = 1; }


  unsigned int i;
  for ( i = 0; pointsIter != pointsEnd; ++pointsIter, ++i )
    {

    // update progress
    if ( !(i % updateVisits) )
      {
      this->UpdateProgress( (float) i/ (float) totalPixels );
      }

    node = pointsIter.Value();
    if ( vnl_math_abs( node.GetValue() ) <= maxValue )
      {
      this->CalculateDistance( node.GetIndex() );
      }
    }

}

template <class TLevelSet>
double
LevelSetNeighborhoodExtractor<TLevelSet>
::CalculateDistance(
  IndexType& index)
{

  m_LastPointIsInside = false;

  typename LevelSetImageType::PixelType centerValue;
  PixelType inputPixel;

  inputPixel = m_InputLevelSet->GetPixel( index );
  centerValue = (double) inputPixel;
  centerValue -= m_LevelSetValue;

  NodeType centerNode;
  centerNode.SetIndex( index );

  if( centerValue == 0.0 )
    { 
    centerNode.SetValue( 0.0 );
    m_InsidePoints->InsertElement( m_InsidePoints->Size(), centerNode );
    m_LastPointIsInside = true;
    return 0.0;
    }

  bool inside = ( centerValue <= 0.0 );

  IndexType neighIndex = index;
  typename LevelSetImageType::PixelType neighValue;
  NodeType  neighNode;
  double distance;

  // In each dimension, find the distance to the zero set
  // by linear interpolating along the grid line.
  for( unsigned int j = 0; j < SetDimension; j++ )
    {
    neighNode.SetValue( m_LargeValue );

    for( int s = -1; s < 2; s = s + 2 )
      {
      neighIndex[j] = index[j] + s;
      
      if( neighIndex[j] > m_ImageSize[j] - 1 || 
          neighIndex[j] < 0 )
        {
        continue;
        }
          
      inputPixel = m_InputLevelSet->GetPixel( neighIndex );
      neighValue = inputPixel;
      neighValue -= m_LevelSetValue;

      if( ( neighValue > 0 && inside ) ||
          ( neighValue < 0 && !inside ) )
        {
        distance = centerValue / ( centerValue - neighValue );

        if( neighNode.GetValue() > distance )
          {
          neighNode.SetValue( distance );
          neighNode.SetIndex( neighIndex );
          }
        }

      } // end one dim loop

    // put the minimum distance neighbor onto the heap
    m_NodesUsed[j] = neighNode;

    // reset neighIndex
    neighIndex[j] = index[j];

    } // end dimension loop

  // sort the neighbors according to distance
  std::sort( m_NodesUsed.begin(), m_NodesUsed.end() );

  // The final distance is given by the minimum distance to the plane
  // crossing formed by the zero set crossing points.
  distance = 0.0;
  for( unsigned int j = 0; j < SetDimension; j++ )
    {
    neighNode = m_NodesUsed[j];

    if( neighNode.GetValue() >= m_LargeValue )
      { 
      break;
      }

    distance += 1.0 / vnl_math_sqr( (double)neighNode.GetValue() );
    }

  if( distance == 0.0 )
    {
    return m_LargeValue;
    }

  distance = vcl_sqrt( 1.0 / distance );
  centerNode.SetValue( distance );

  if( inside )
    {
    m_InsidePoints->InsertElement( m_InsidePoints->Size(), centerNode );
    m_LastPointIsInside = true;
    }
  else
    {
    m_OutsidePoints->InsertElement( m_OutsidePoints->Size(), centerNode );
    m_LastPointIsInside = false;
    }

  return distance;

}

} // namespace itk

#endif