Orfeo Toolbox  3.16
Public Types | Public Member Functions | Static Public Member Functions | Protected Types | Protected Member Functions | Protected Attributes | Private Member Functions | Private Attributes
itk::ActiveShapeModelCalculator< TImage > Class Template Reference

Base class for ActiveShapeModelCalculator object. More...

#include <itkActiveShapeModelCalculator.h>

+ Inheritance diagram for itk::ActiveShapeModelCalculator< TImage >:
+ Collaboration diagram for itk::ActiveShapeModelCalculator< TImage >:

List of all members.

Public Types

typedef
BinaryThresholdImageFilter
< Image3DType, Image3DType
BinaryFilterType
typedef
BinaryThresholdImageFilter
< Image2DType,
Image2D8bitsType
BinaryFilterType1
typedef
BinaryThresholdImageFilter
< Image3DType,
Image3D8bitsType
BinaryFilterType2
typedef
ImageRegionConstIterator
< Image3D8bitsType
ConstIteratorType
typedef SmartPointer< const SelfConstPointer
typedef
DanielssonDistanceMapImageFilter
< Image3DType, Image3DType
DistanceMapFilterType
typedef
GradientMagnitudeImageFilter
< Image3DType, Image3DType
GradientFilterType
typedef Image< Pixel8bitsType, 2 > Image2D8bitsType
typedef Image2DType::Pointer Image2DPointer
typedef Image< PixelType, 2 > Image2DType
typedef Image< Pixel8bitsType, 3 > Image3D8bitsType
typedef Image3DType::ConstPointer Image3DConstPointer
typedef TImage Image3DType
typedef Image3DType::IndexType Index3DType
typedef Image2D8bitsType::IndexType IndexType
typedef ImageRegionIterator
< Image2D8bitsType
IteratorType
typedef
ImageLinearIteratorWithIndex
< Image2DType
LinearIteratorType
typedef std::list< IndexTypeList2DType
typedef vnl_matrix< double > MatrixOfDoubleType
typedef vnl_matrix< int > MatrixOfIntegerType
typedef Vector< unsigned int, 2 > MeasurementVectorType
typedef NeighborhoodIterator
< Image2D8bitsType
NeighborIteratorType
typedef unsigned char Pixel8bitsType
typedef float PixelType
typedef
PointSetType::PointDataContainer 
PointDataContainer
typedef SmartPointer< SelfPointer
typedef
PointSetType::PointsContainer 
PointsContainer
typedef PointSet< unsigned
short, 2 > 
PointSetType
typedef PointsContainer::Iterator PointsIterator
typedef PointSetType::PointType PointType
typedef
BinaryPruningImageFilter
< Image2D8bitsType,
Image2D8bitsType
PruneFilterType
typedef Statistics::ListSample
< MeasurementVectorType
SampleType
typedef
ActiveShapeModelCalculator
< TImage > 
Self
typedef
ImageSliceConstIteratorWithIndex
< Image3DType
SliceIteratorType
typedef Object Superclass
typedef
BinaryThinningImageFilter
< Image2D8bitsType,
Image2D8bitsType
ThinFilterType
typedef Vector< double, 2 > Vector2DType
typedef Vector< double, 3 > Vector3DType
typedef vnl_vector< double > VectorOfDoubleType
typedef std::vector< unsigned int > VectorType

Public Member Functions

unsigned long AddObserver (const EventObject &event, Command *)
unsigned long AddObserver (const EventObject &event, Command *) const
virtual ::itk::LightObject::Pointer CreateAnother (void) const
virtual void DebugOff () const
virtual void DebugOn () const
virtual void Delete ()
void GenerateData ()
CommandGetCommand (unsigned long tag)
bool GetDebug () const
VectorOfDoubleType GetEigenvalues ()
MatrixOfDoubleType GetEigenvector ()
const double & GetLowerThresholdGradient () const
VectorOfDoubleType GetMeanShape ()
MetaDataDictionaryGetMetaDataDictionary (void)
const MetaDataDictionaryGetMetaDataDictionary (void) const
virtual unsigned long GetMTime () const
virtual const char * GetNameOfClass () const
const unsigned int & GetNumberOfTrainingImages () const
const unsigned int & GetPruneIteration () const
virtual int GetReferenceCount () const
const double & GetTolerance () const
const double & GetUpperThresholdDistance () const
const double & GetUpperThresholdMeanDistance () const
bool HasObserver (const EventObject &event) const
void InvokeEvent (const EventObject &)
void InvokeEvent (const EventObject &) const
virtual void Modified () const
void Print (std::ostream &os, Indent indent=0) const
virtual void Register () const
void RemoveAllObservers ()
void RemoveObserver (unsigned long tag)
void SetDebug (bool debugFlag) const
virtual void SetImage (const Image3DType *image)
void SetLowerThresholdGradient (const double &lt)
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
void SetPruneIteration (const unsigned int &t)
virtual void SetReferenceCount (int)
void SetTolerance (const double &t)
void SetUpperThresholdDistance (const double &ut2)
void SetUpperThresholdMeanDistance (const double &ut1)
virtual void UnRegister () const

Static Public Member Functions

static void BreakOnError ()
static bool GetGlobalWarningDisplay ()
static void GlobalWarningDisplayOff ()
static void GlobalWarningDisplayOn ()
static Pointer New ()
static void SetGlobalWarningDisplay (bool flag)

Protected Types

typedef int InternalReferenceCountType

Protected Member Functions

 ActiveShapeModelCalculator ()
 ~ActiveShapeModelCalculator ()
virtual void PrintHeader (std::ostream &os, Indent indent) const
bool PrintObservers (std::ostream &os, Indent indent) const
void PrintSelf (std::ostream &os, Indent indent) const
virtual void PrintTrailer (std::ostream &os, Indent indent) const

Protected Attributes

InternalReferenceCountType m_ReferenceCount
SimpleFastMutexLock m_ReferenceCountLock

Private Member Functions

 ActiveShapeModelCalculator (const Self &)
void operator= (const Self &)

Private Attributes

VectorOfDoubleType m_EigenValues
MatrixOfDoubleType m_EigenVectors
Image3DConstPointer m_Image
float m_LowerThreshold
VectorOfDoubleType m_Means
unsigned int m_NumberOfTrainingImages
unsigned int m_PruneIteration
float m_Tolerance
float m_UpperThreshold1
float m_UpperThreshold2
bool m_Valid

Detailed Description

template<class TImage>
class itk::ActiveShapeModelCalculator< TImage >

Base class for ActiveShapeModelCalculator object.

itkActiveShapeModelCalculator performs a principal component analysis (PCA) on a set of binary tranining images. The input is a binary volume that contains the shapes. The number of largest principal components which explain 98% of shape variance is automatically computed. The ITK pipeline mechanism sets up the storage for input images. The outputs are the mean shape, eigenvectors and eigenvalues. The user specifies the tolerance value (in pixel unit) for automatic landmark identification. The algorithm uses the VNL library to perform the eigen analysis.

The Update() function enables the calculation of the various models, creates the membership function objects and populates them.

REFERENCES
[1] Cootes T., Taylor C., et. al, Active Shape Models - Their training and application, Comput. Vis. Image Understanding, vol. 61, pp. 38-59, 1995.

[2] D. H. Douglas and T. K. Peucker, Algorithms for the reduction of the number of points required to represent a digitized line or its caricature, Canadian Cartographer 10(2), pp. 112–122, 1973.

Definition at line 77 of file itkActiveShapeModelCalculator.h.


Member Typedef Documentation

Definition at line 149 of file itkActiveShapeModelCalculator.h.

Definition at line 150 of file itkActiveShapeModelCalculator.h.

Definition at line 151 of file itkActiveShapeModelCalculator.h.

Definition at line 142 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef SmartPointer<const Self> itk::ActiveShapeModelCalculator< TImage >::ConstPointer

Reimplemented from itk::Object.

Definition at line 84 of file itkActiveShapeModelCalculator.h.

Definition at line 152 of file itkActiveShapeModelCalculator.h.

Standard filter type within this class.

Definition at line 148 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Image< Pixel8bitsType, 2 > itk::ActiveShapeModelCalculator< TImage >::Image2D8bitsType

Definition at line 116 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Image2DType::Pointer itk::ActiveShapeModelCalculator< TImage >::Image2DPointer

Standard image type pointer within this class.

Definition at line 124 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Image< PixelType, 2 > itk::ActiveShapeModelCalculator< TImage >::Image2DType

Definition at line 115 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Image< Pixel8bitsType, 3 > itk::ActiveShapeModelCalculator< TImage >::Image3D8bitsType

Definition at line 117 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Image3DType::ConstPointer itk::ActiveShapeModelCalculator< TImage >::Image3DConstPointer

Definition at line 125 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef TImage itk::ActiveShapeModelCalculator< TImage >::Image3DType

Standard image type within this class.

Definition at line 114 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Image3DType::IndexType itk::ActiveShapeModelCalculator< TImage >::Index3DType

Definition at line 121 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Image2D8bitsType::IndexType itk::ActiveShapeModelCalculator< TImage >::IndexType

Standard index type within this class.

Definition at line 120 of file itkActiveShapeModelCalculator.h.

typedef int itk::LightObject::InternalReferenceCountType
protectedinherited

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 137 of file itkLightObject.h.

Definition at line 143 of file itkActiveShapeModelCalculator.h.

Standard iterator type within this class.

Definition at line 140 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef std::list<IndexType> itk::ActiveShapeModelCalculator< TImage >::List2DType

Standard list type within this class.

Definition at line 136 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef vnl_matrix<double> itk::ActiveShapeModelCalculator< TImage >::MatrixOfDoubleType

Standard matrix type within this class.

Definition at line 110 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef vnl_matrix<int> itk::ActiveShapeModelCalculator< TImage >::MatrixOfIntegerType

Definition at line 111 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Vector< unsigned int, 2 > itk::ActiveShapeModelCalculator< TImage >::MeasurementVectorType

Definition at line 103 of file itkActiveShapeModelCalculator.h.

Definition at line 144 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef unsigned char itk::ActiveShapeModelCalculator< TImage >::Pixel8bitsType

Definition at line 98 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef float itk::ActiveShapeModelCalculator< TImage >::PixelType
Extract the dimension of the image. 

itkStaticConstMacro(ImageDimension, unsigned int, TImage::ImageDimension); Standard pixel type within this class.

Definition at line 90 of file itkActiveShapeModelCalculator.h.

Definition at line 133 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef SmartPointer<Self> itk::ActiveShapeModelCalculator< TImage >::Pointer

Reimplemented from itk::Object.

Definition at line 83 of file itkActiveShapeModelCalculator.h.

Standard container type within this class.

Definition at line 132 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef PointSet< unsigned short, 2 > itk::ActiveShapeModelCalculator< TImage >::PointSetType

Standard PointSet type within this class.

Definition at line 128 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef PointsContainer::Iterator itk::ActiveShapeModelCalculator< TImage >::PointsIterator

Definition at line 145 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef PointSetType::PointType itk::ActiveShapeModelCalculator< TImage >::PointType

Definition at line 129 of file itkActiveShapeModelCalculator.h.

Definition at line 154 of file itkActiveShapeModelCalculator.h.

Definition at line 137 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef ActiveShapeModelCalculator<TImage> itk::ActiveShapeModelCalculator< TImage >::Self

Standard class typedefs.

Reimplemented from itk::Object.

Definition at line 81 of file itkActiveShapeModelCalculator.h.

Definition at line 141 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Object itk::ActiveShapeModelCalculator< TImage >::Superclass

Reimplemented from itk::Object.

Definition at line 82 of file itkActiveShapeModelCalculator.h.

Definition at line 153 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Vector< double, 2 > itk::ActiveShapeModelCalculator< TImage >::Vector2DType

Standard vector type within this class.

Definition at line 101 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Vector< double, 3 > itk::ActiveShapeModelCalculator< TImage >::Vector3DType

Definition at line 102 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef vnl_vector<double> itk::ActiveShapeModelCalculator< TImage >::VectorOfDoubleType

Definition at line 105 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef std::vector< unsigned int> itk::ActiveShapeModelCalculator< TImage >::VectorType

Definition at line 104 of file itkActiveShapeModelCalculator.h.


Constructor & Destructor Documentation

template<class TImage>
itk::ActiveShapeModelCalculator< TImage >::ActiveShapeModelCalculator ( )
inlineprotected

Definition at line 225 of file itkActiveShapeModelCalculator.h.

References NULL.

template<class TImage>
itk::ActiveShapeModelCalculator< TImage >::~ActiveShapeModelCalculator ( )
inlineprotected

Definition at line 240 of file itkActiveShapeModelCalculator.h.

template<class TImage>
itk::ActiveShapeModelCalculator< TImage >::ActiveShapeModelCalculator ( const Self )
private

Member Function Documentation

unsigned long itk::Object::AddObserver ( const EventObject event,
Command cmd 
)
inherited

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

Definition at line 389 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), itk::ProgressAccumulator::RegisterInternalFilter(), otb::ImageFileWriter< TInputImage >::Update(), and otb::WriterWatcherBase::WriterWatcherBase().

unsigned long itk::Object::AddObserver ( const EventObject event,
Command cmd 
) const
inherited

Definition at line 401 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

void itk::LightObject::BreakOnError ( )
staticinherited

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

Definition at line 149 of file itkLightObject.cxx.

template<class TImage>
virtual::itk::LightObject::Pointer itk::ActiveShapeModelCalculator< TImage >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

void itk::Object::DebugOff ( ) const
virtualinherited

Turn debugging output off.

Definition at line 253 of file itkObject.cxx.

void itk::Object::DebugOn ( ) const
virtualinherited

Turn debugging output on.

Definition at line 242 of file itkObject.cxx.

void itk::LightObject::Delete ( )
virtualinherited

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

Delete a itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C++ delete method will not work with reference counting.

Definition at line 88 of file itkLightObject.cxx.

template<class TImage >
void itk::ActiveShapeModelCalculator< TImage >::GenerateData ( void  )

Compute mean, eigenvectors and eigenvalues of a new or modified training set. This method computes the mean, eigenvectors and eigenvalues of the training set given as a parameter and stores them in the object. The values of these parameters can then be retrieved by using other methods of this object.

Generate data (start the model building process)

Set the number of training images

       Normal slope ****************

Definition at line 46 of file itkActiveShapeModelCalculator.txx.

References itk::Size< VDimension >::Fill(), itk::FixedArray< TValueType, VLength >::Fill(), itk::Index< VIndexDimension >::GetIndex(), itk::Vector< T, NVectorDimension >::GetSquaredNorm(), and itk::ImageLinearConstIteratorWithIndex< TImage >::SetDirection().

Command * itk::Object::GetCommand ( unsigned long  tag)
inherited

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

Definition at line 414 of file itkObject.cxx.

References itk::Object::GetCommand(), and NULL.

Referenced by itk::Object::GetCommand().

bool itk::Object::GetDebug ( ) const
inherited

Get the value of the debug flag.

Definition at line 264 of file itkObject.cxx.

Referenced by otb::ogr::ImageReference< double >::GetDebug().

template<class TImage >
ActiveShapeModelCalculator< TImage >::VectorOfDoubleType itk::ActiveShapeModelCalculator< TImage >::GetEigenvalues ( )

Return the largest t eigenvalues [1 x t]

Get the largest t eigenvalues

Definition at line 706 of file itkActiveShapeModelCalculator.txx.

template<class TImage >
ActiveShapeModelCalculator< TImage >::MatrixOfDoubleType itk::ActiveShapeModelCalculator< TImage >::GetEigenvector ( )

Return the matrix where each column corresponds to a eigenvector [2n x t]

Get the eigen vectors

Definition at line 721 of file itkActiveShapeModelCalculator.txx.

bool itk::Object::GetGlobalWarningDisplay ( )
staticinherited

Get the value of the global debug output control flag.

Definition at line 381 of file itkObject.cxx.

template<class TImage>
const double& itk::ActiveShapeModelCalculator< TImage >::GetLowerThresholdGradient ( ) const
inline

Definition at line 172 of file itkActiveShapeModelCalculator.h.

template<class TImage >
ActiveShapeModelCalculator< TImage >::VectorOfDoubleType itk::ActiveShapeModelCalculator< TImage >::GetMeanShape ( )

Return the mean Shape of the model (x1 y1 x2 y2 ... xn yn), where n = n. of landmarks

Definition at line 691 of file itkActiveShapeModelCalculator.txx.

MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  )
inherited
Returns:
A reference to this objects MetaDataDictionary.
Warning:
This reference may be changed.

Reimplemented in otb::ImageMetadataInterfaceBase.

Definition at line 532 of file itkObject.cxx.

References NULL.

Referenced by otb::RenderingImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData(), itk::Brains2MaskImageIO::CanReadFile(), otb::DataNode< TPrecision, VDimension, TValuePrecision >::CopyFieldList(), otb::VectorImage< TPixel, VImageDimension >::CopyInformation(), otb::Image< TPixel, VImageDimension >::CopyInformation(), itk::GDCMImageIO::GetBodyPart(), itk::GDCMImageIO::GetInstitution(), itk::GDCMImageIO::GetManufacturer(), itk::GDCMImageIO::GetModality(), itk::GDCMImageIO::GetModel(), itk::GDCMImageIO::GetNumberOfSeriesInStudy(), itk::GDCMImageIO::GetNumberOfStudyRelatedSeries(), itk::GDCMImageIO::GetPatientAge(), itk::GDCMImageIO::GetPatientDOB(), itk::GDCMImageIO::GetPatientID(), itk::GDCMImageIO::GetPatientName(), itk::GDCMImageIO::GetPatientSex(), itk::GDCMImageIO::GetScanOptions(), itk::GDCMImageIO::GetStudyDate(), itk::GDCMImageIO::GetStudyDescription(), itk::GDCMImageIO::GetStudyID(), itk::GDCMImageIO::GetValueFromTag(), otb::GDALImageIO::InternalReadImageInformation(), itk::GDCMImageIO::InternalReadImageInformation(), otb::GDALImageIO::InternalWriteImageInformation(), otb::RAMDrivenAdaptativeStreamingManager< TImage >::PrepareStreaming(), itk::DICOMImageIO2::Read(), itk::DICOMImageIO2::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), otb::JPEG2000ImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), itk::MRCImageIO::ReadImageInformation(), itk::IPLCommonImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), otb::ImageMetadataInterfaceBase::SetImage(), itk::NiftiImageIO::SetImageIOMetadataFromNIfTI(), otb::VectorDataToLabelImageFilter< TVectorData, TOutputImage >::SetOutputParametersFromImage(), itk::NrrdImageIO::Write(), itk::GDCMImageIO::Write(), and itk::PolygonGroupSpatialObjectXMLFileWriter::WriteFile().

const MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  ) const
inherited
Returns:
A constant reference to this objects MetaDataDictionary.

Reimplemented in otb::ImageMetadataInterfaceBase.

Definition at line 543 of file itkObject.cxx.

References NULL.

unsigned long itk::Object::GetMTime ( void  ) const
virtualinherited

Return this objects modified time.

Return the modification for this object.

Reimplemented in itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::SpatialObject< TDimension >, itk::SpatialObject< 3 >, itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::MeshSpatialObject< TMesh >, and itk::SceneSpatialObject< TSpaceDimension >.

Definition at line 286 of file itkObject.cxx.

Referenced by itk::DeformationFieldSource< TOutputImage >::GetMTime(), itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >::GetMTime(), itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< TDimension >::GetMTime(), itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime(), otb::Function::NoStretchRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), itk::VTKImageExportBase::PipelineModifiedCallback(), and itk::ProcessObject::UpdateOutputInformation().

template<class TImage>
virtual const char* itk::ActiveShapeModelCalculator< TImage >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::Object.

template<class TImage>
const unsigned int& itk::ActiveShapeModelCalculator< TImage >::GetNumberOfTrainingImages ( ) const
inline

Get the number of training images.

Definition at line 204 of file itkActiveShapeModelCalculator.h.

template<class TImage>
const unsigned int& itk::ActiveShapeModelCalculator< TImage >::GetPruneIteration ( ) const
inline

Definition at line 200 of file itkActiveShapeModelCalculator.h.

virtual int itk::LightObject::GetReferenceCount ( ) const
inlinevirtualinherited

Gets the reference count on this object.

Definition at line 105 of file itkLightObject.h.

template<class TImage>
const double& itk::ActiveShapeModelCalculator< TImage >::GetTolerance ( void  ) const
inline

Definition at line 194 of file itkActiveShapeModelCalculator.h.

template<class TImage>
const double& itk::ActiveShapeModelCalculator< TImage >::GetUpperThresholdDistance ( ) const
inline

Definition at line 188 of file itkActiveShapeModelCalculator.h.

template<class TImage>
const double& itk::ActiveShapeModelCalculator< TImage >::GetUpperThresholdMeanDistance ( ) const
inline

Definition at line 180 of file itkActiveShapeModelCalculator.h.

static void itk::Object::GlobalWarningDisplayOff ( )
inlinestaticinherited
static void itk::Object::GlobalWarningDisplayOn ( )
inlinestaticinherited

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

bool itk::Object::HasObserver ( const EventObject event) const
inherited

Return true if an observer is registered for this event.

Definition at line 467 of file itkObject.cxx.

void itk::Object::InvokeEvent ( const EventObject event)
inherited
void itk::Object::InvokeEvent ( const EventObject event) const
inherited

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

Definition at line 457 of file itkObject.cxx.

void itk::Object::Modified ( void  ) const
virtualinherited

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Make sure this object's modified time is greater than all others.

Reimplemented in otb::SVMModel< TValue, TLabel >, otb::SurfaceAdjacencyEffect6SCorrectionSchemeFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, otb::GenericRSTransform< TScalarType, NInputDimensions, NOutputDimensions >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, TBufferConverter >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, MeanShift::VectorBufferConverter >, otb::GCPsToRPCSensorModelImageFilter< TImage >, otb::Polygon< TValue >, otb::ImageRegionAdaptativeSplitter< VImageDimension >, otb::GenericInterpolateImageFunction< TInputImage, TFunction, TBoundaryCondition, TCoordRep >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, otb::PolyLineParametricPathWithValue< TValue, VDimension >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, otb::PolyLineParametricPathWithValue< TValue, 2 >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, otb::PhysicalToRPCSensorModelImageFilter< TImage >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, TFilter >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, RankImageFilter< TInputImage, TInputImage, FlatStructuringElement< ::itk::GetImageDimension< TInputImage >::ImageDimension > > >, itk::NormalizeImageFilter< TInputImage, TOutputImage >, and otb::StatisticsXMLFileReader< TMeasurementVector >.

Definition at line 297 of file itkObject.cxx.

Referenced by otb::Wrapper::InputImageListParameter::AddFromFileName(), otb::Wrapper::InputVectorDataListParameter::AddFromFileName(), otb::Wrapper::InputImageListParameter::AddImage(), otb::Wrapper::InputImageListParameter::AddNullElement(), otb::Wrapper::InputVectorDataListParameter::AddNullElement(), otb::Wrapper::StringListParameter::AddNullElement(), otb::VectorDataModel::AddPointToGeometry(), otb::Wrapper::InputVectorDataListParameter::AddVectorData(), otb::Wrapper::InputImageListParameter::ClearValue(), otb::Wrapper::InputVectorDataListParameter::ClearValue(), otb::VectorDataModel::DeleteGeometry(), otb::VectorDataModel::EndGeometry(), otb::Wrapper::InputImageListParameter::Erase(), otb::Wrapper::InputVectorDataListParameter::Erase(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), otb::ImageWidget< TInputImage >::LinearInterpolationOff(), otb::ImageWidget< TInputImage >::LinearInterpolationOn(), itk::MatrixOffsetTransformBase< TScalarType, NInputDimensions, NOutputDimensions >::MatrixOffsetTransformBase(), otb::ogr::ImageReference< double >::Modified(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetAutoMinMax(), otb::BlendingImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetBlendingFunction(), otb::ImageLayerGenerator< TImageLayer >::SetBlendingFunction(), otb::TileMapImageIO::SetCacheDirectory(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetChannelList(), itk::LBFGSBOptimizer::SetCostFunction(), itk::MINC2ImageIO::SetDimensionName(), itk::ImageIOBase::SetDimensions(), itk::ImageIOBase::SetDirection(), otb::Wrapper::InputImageListParameter::SetImageList(), itk::GDCMSeriesFileNames::SetInputDirectory(), otb::HistogramStatisticsFunction< TInputHistogram, TOutput >::SetInputHistogram(), otb::ImageToGenericRSOutputParameters< TImage >::SetInputKeywordList(), otb::Wrapper::InputVectorDataListParameter::SetListFromFileName(), otb::Wrapper::InputImageListParameter::SetListFromFileName(), otb::Function::RenderingFunction< TPixel, TRGBPixel >::SetListSample(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), otb::Wrapper::InputImageListParameter::SetNthFileName(), otb::Wrapper::InputVectorDataListParameter::SetNthFileName(), itk::ImageIOBase::SetNumberOfDimensions(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ImageIOBase::SetOrigin(), otb::ImageToGenericRSOutputParameters< TImage >::SetOutputProjectionRef(), otb::MapProjectionAdapter::SetParameter(), otb::Function::GaussianRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetParameters(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetParameters(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), otb::ImageLayerGenerator< TImageLayer >::SetRenderingFunction(), otb::RenderingImageFilter< TInputImage, TOutputImage >::SetRenderingFunction(), itk::ImageIOBase::SetSpacing(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation(), otb::Wrapper::OutputFilenameParameter::SetValue(), otb::Wrapper::InputFilenameParameter::SetValue(), otb::Wrapper::ListViewParameter::SetValue(), otb::Wrapper::ChoiceParameter::SetValue(), otb::Wrapper::InputVectorDataListParameter::SetVectorDataList(), and otb::MapProjectionAdapter::SetWkt().

template<class TImage>
static Pointer itk::ActiveShapeModelCalculator< TImage >::New ( )
static

Method for creation through the object factory.

Reimplemented from itk::Object.

template<class TImage>
void itk::ActiveShapeModelCalculator< TImage >::operator= ( const Self )
private

Reimplemented from itk::Object.

void itk::LightObject::Print ( std::ostream &  os,
Indent  indent = 0 
) const
inherited

Cause the object to print itself out.

Avoid DLL boundary problems. This function will be common to all itk objects. It just calls the header/self/trailer virtual print methods, which can be overriden by subclasses (any itk object).

Definition at line 135 of file itkLightObject.cxx.

References itk::Indent::GetNextIndent().

Referenced by itk::operator<<().

void itk::LightObject::PrintHeader ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Define a default print header for all objects.

Definition at line 320 of file itkLightObject.cxx.

bool itk::Object::PrintObservers ( std::ostream &  os,
Indent  indent 
) const
protectedinherited

Definition at line 478 of file itkObject.cxx.

template<class TImage>
void itk::ActiveShapeModelCalculator< TImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
inlineprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Chaining method to print an object's instance variables, as well as its superclasses.

Reimplemented from itk::Object.

Definition at line 242 of file itkActiveShapeModelCalculator.h.

void itk::LightObject::PrintTrailer ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Define a default print trailer for all objects.

Definition at line 331 of file itkLightObject.cxx.

void itk::Object::Register ( ) const
virtualinherited

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

Definition at line 309 of file itkObject.cxx.

Referenced by itk::ObjectFactoryBase::RegisterFactory().

void itk::Object::RemoveAllObservers ( )
inherited

Remove all observers .

Definition at line 435 of file itkObject.cxx.

void itk::Object::RemoveObserver ( unsigned long  tag)
inherited

Remove the observer with this tag value.

Definition at line 425 of file itkObject.cxx.

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), and otb::ImageFileWriter< TInputImage >::Update().

void itk::Object::SetDebug ( bool  debugFlag) const
inherited

Set the value of the debug flag. A non-zero value turns debugging on.

Definition at line 275 of file itkObject.cxx.

void itk::Object::SetGlobalWarningDisplay ( bool  val)
staticinherited

This is a global flag that controls whether any debug, warning or error messages are displayed.

Set the value of the global debug output control flag.

Definition at line 370 of file itkObject.cxx.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

template<class TImage>
virtual void itk::ActiveShapeModelCalculator< TImage >::SetImage ( const Image3DType image)
inlinevirtual

Set the input binary image (values in {0,255}) .

Definition at line 157 of file itkActiveShapeModelCalculator.h.

template<class TImage>
void itk::ActiveShapeModelCalculator< TImage >::SetLowerThresholdGradient ( const double &  lt)
inline

Set/Get the lower threshold for the binary filter applied on the gradient images. Changing this value from the default is not recommended or necessary but could be used to get thinner contours at the risk of creating an unstable solution.

Definition at line 170 of file itkActiveShapeModelCalculator.h.

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary rhs)
inherited
template<class TImage>
void itk::ActiveShapeModelCalculator< TImage >::SetPruneIteration ( const unsigned int &  t)
inline

Set/Get the number of iteration for Pruning filter

Definition at line 198 of file itkActiveShapeModelCalculator.h.

void itk::Object::SetReferenceCount ( int  ref)
virtualinherited

Sets the reference count (use with care)

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 347 of file itkObject.cxx.

template<class TImage>
void itk::ActiveShapeModelCalculator< TImage >::SetTolerance ( const double &  t)
inline

Set/Get the tolerance threshold (in pixels unit) for the automatic landmarks.

Definition at line 192 of file itkActiveShapeModelCalculator.h.

template<class TImage>
void itk::ActiveShapeModelCalculator< TImage >::SetUpperThresholdDistance ( const double &  ut2)
inline

Set/Get the distance threshold for the binary filter applied on the distance images Changing this value from the default is not recommended or necessary but could be used to get thicker contours at the risk of creating an unstable solution.

Definition at line 186 of file itkActiveShapeModelCalculator.h.

template<class TImage>
void itk::ActiveShapeModelCalculator< TImage >::SetUpperThresholdMeanDistance ( const double &  ut1)
inline

Set/Get the distance threshold for the binary filter applied on the mean of the distance images. Changing this value from the default is not recommended or necessary but could be used to get thicker contours at the risk of creating an unstable solution.

Definition at line 178 of file itkActiveShapeModelCalculator.h.

void itk::Object::UnRegister ( ) const
virtualinherited

Decrease the reference count (release by another object).

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 324 of file itkObject.cxx.

Referenced by itk::Object::New(), and itk::ObjectFactoryBase::UnRegisterFactory().


Member Data Documentation

template<class TImage>
VectorOfDoubleType itk::ActiveShapeModelCalculator< TImage >::m_EigenValues
private

Definition at line 293 of file itkActiveShapeModelCalculator.h.

template<class TImage>
MatrixOfDoubleType itk::ActiveShapeModelCalculator< TImage >::m_EigenVectors
private

Definition at line 292 of file itkActiveShapeModelCalculator.h.

template<class TImage>
Image3DConstPointer itk::ActiveShapeModelCalculator< TImage >::m_Image
private

Definition at line 296 of file itkActiveShapeModelCalculator.h.

template<class TImage>
float itk::ActiveShapeModelCalculator< TImage >::m_LowerThreshold
private

Definition at line 287 of file itkActiveShapeModelCalculator.h.

template<class TImage>
VectorOfDoubleType itk::ActiveShapeModelCalculator< TImage >::m_Means
private

Definition at line 291 of file itkActiveShapeModelCalculator.h.

template<class TImage>
unsigned int itk::ActiveShapeModelCalculator< TImage >::m_NumberOfTrainingImages
private

Definition at line 294 of file itkActiveShapeModelCalculator.h.

template<class TImage>
unsigned int itk::ActiveShapeModelCalculator< TImage >::m_PruneIteration
private

Definition at line 295 of file itkActiveShapeModelCalculator.h.

InternalReferenceCountType itk::LightObject::m_ReferenceCount
mutableprotectedinherited

Number of uses of this object by other objects.

Definition at line 141 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock
mutableprotectedinherited

Mutex lock to protect modification to the reference count

Definition at line 144 of file itkLightObject.h.

template<class TImage>
float itk::ActiveShapeModelCalculator< TImage >::m_Tolerance
private

Definition at line 290 of file itkActiveShapeModelCalculator.h.

template<class TImage>
float itk::ActiveShapeModelCalculator< TImage >::m_UpperThreshold1
private

Definition at line 288 of file itkActiveShapeModelCalculator.h.

template<class TImage>
float itk::ActiveShapeModelCalculator< TImage >::m_UpperThreshold2
private

Definition at line 289 of file itkActiveShapeModelCalculator.h.

template<class TImage>
bool itk::ActiveShapeModelCalculator< TImage >::m_Valid
private

Definition at line 286 of file itkActiveShapeModelCalculator.h.


The documentation for this class was generated from the following files:

Generated at Sun Feb 3 2013 01:01:18 for Orfeo Toolbox with doxygen 1.8.1.1