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Orfeo Toolbox
3.16
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Wrap of the vnl_amoeba algorithm. More...
#include <itkAmoebaOptimizer.h>
Inheritance diagram for itk::AmoebaOptimizer:
Collaboration diagram for itk::AmoebaOptimizer:Public Types | |
| typedef ReceptorMemberCommand < Self > | CommandType |
| typedef SmartPointer< const Self > | ConstPointer |
| typedef CostFunctionType::Pointer | CostFunctionPointer |
| typedef SingleValuedCostFunction | CostFunctionType |
| typedef CostFunctionType::DerivativeType | DerivativeType |
| typedef vnl_amoeba | InternalOptimizerType |
| typedef vnl_vector< double > | InternalParametersType |
| typedef CostFunctionType::MeasureType | MeasureType |
| typedef Superclass::ParametersType | ParametersType |
| typedef SmartPointer< Self > | Pointer |
| typedef Superclass::ScalesType | ScalesType |
| typedef AmoebaOptimizer | Self |
| typedef SingleValuedNonLinearVnlOptimizer | Superclass |
Public Member Functions | |
| unsigned long | AddObserver (const EventObject &event, Command *) |
| unsigned long | AddObserver (const EventObject &event, Command *) const |
| virtual void | AutomaticInitialSimplexOff () |
| virtual void | AutomaticInitialSimplexOn () |
| virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
| virtual void | DebugOff () const |
| virtual void | DebugOn () const |
| virtual void | Delete () |
| virtual bool | GetAutomaticInitialSimplex () const |
| virtual const ParametersType & | GetCachedCurrentPosition () |
| virtual const DerivativeType & | GetCachedDerivative () |
| virtual const MeasureType & | GetCachedValue () |
| Command * | GetCommand (unsigned long tag) |
| virtual const CostFunctionType * | GetCostFunction () |
| virtual const ParametersType & | GetCurrentPosition () |
| bool | GetDebug () const |
| virtual double | GetFunctionConvergenceTolerance () const |
| virtual const ParametersType & | GetInitialPosition () |
| virtual ParametersType | GetInitialSimplexDelta () const |
| virtual const bool & | GetMaximize () |
| virtual unsigned int | GetMaximumNumberOfIterations () const |
| MetaDataDictionary & | GetMetaDataDictionary (void) |
| const MetaDataDictionary & | GetMetaDataDictionary (void) const |
| bool | GetMinimize () const |
| virtual unsigned long | GetMTime () const |
| virtual const char * | GetNameOfClass () const |
| vnl_amoeba * | GetOptimizer (void) |
| virtual double | GetParametersConvergenceTolerance () const |
| virtual int | GetReferenceCount () const |
| virtual const ScalesType & | GetScales () |
| const std::string | GetStopConditionDescription () const |
| MeasureType | GetValue (const ParametersType ¶meters) const |
| MeasureType | GetValue () const |
| bool | HasObserver (const EventObject &event) const |
| void | InvokeEvent (const EventObject &) |
| void | InvokeEvent (const EventObject &) const |
| virtual void | MaximizeOff () |
| virtual void | MaximizeOn () |
| void | MinimizeOff () |
| void | MinimizeOn () |
| virtual void | Modified () const |
| void | Print (std::ostream &os, Indent indent=0) const |
| virtual void | Register () const |
| void | RemoveAllObservers () |
| void | RemoveObserver (unsigned long tag) |
| virtual void | SetAutomaticInitialSimplex (bool _arg) |
| virtual void | SetCostFunction (CostFunctionType *costFunction) |
| virtual void | SetCostFunction (SingleValuedCostFunction *costFunction) |
| void | SetDebug (bool debugFlag) const |
| virtual void | SetFunctionConvergenceTolerance (double tol) |
| virtual void | SetInitialPosition (const ParametersType ¶m) |
| virtual void | SetInitialSimplexDelta (ParametersType _arg) |
| virtual void | SetMaximize (bool _arg) |
| virtual void | SetMaximumNumberOfIterations (unsigned int n) |
| void | SetMetaDataDictionary (const MetaDataDictionary &rhs) |
| void | SetMinimize (bool v) |
| virtual void | SetParametersConvergenceTolerance (double tol) |
| virtual void | SetReferenceCount (int) |
| void | SetScales (const ScalesType &scales) |
| void | StartOptimization (void) |
| virtual void | UnRegister () const |
Static Public Member Functions | |
| static void | BreakOnError () |
| static bool | GetGlobalWarningDisplay () |
| static void | GlobalWarningDisplayOff () |
| static void | GlobalWarningDisplayOn () |
| static Pointer | New () |
| static void | SetGlobalWarningDisplay (bool flag) |
Protected Types | |
| typedef Superclass::CostFunctionAdaptorType | CostFunctionAdaptorType |
| typedef int | InternalReferenceCountType |
Protected Member Functions | |
| AmoebaOptimizer () | |
| virtual | ~AmoebaOptimizer () |
| const CostFunctionAdaptorType * | GetCostFunctionAdaptor (void) const |
| CostFunctionAdaptorType * | GetCostFunctionAdaptor (void) |
| CostFunctionAdaptorType * | GetNonConstCostFunctionAdaptor (void) const |
| virtual void | PrintHeader (std::ostream &os, Indent indent) const |
| bool | PrintObservers (std::ostream &os, Indent indent) const |
| void | PrintSelf (std::ostream &os, Indent indent) const |
| virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
| void | SetCostFunctionAdaptor (CostFunctionAdaptorType *adaptor) |
| virtual void | SetCurrentPosition (const ParametersType ¶m) |
Protected Attributes | |
| CostFunctionPointer | m_CostFunction |
| ParametersType | m_CurrentPosition |
| InternalReferenceCountType | m_ReferenceCount |
| SimpleFastMutexLock | m_ReferenceCountLock |
| bool | m_ScalesInitialized |
Private Member Functions | |
| AmoebaOptimizer (const Self &) | |
| void | operator= (const Self &) |
Private Attributes | |
| bool | m_AutomaticInitialSimplex |
| double | m_FunctionConvergenceTolerance |
| ParametersType | m_InitialSimplexDelta |
| unsigned int | m_MaximumNumberOfIterations |
| bool | m_OptimizerInitialized |
| double | m_ParametersConvergenceTolerance |
| OStringStream | m_StopConditionDescription |
| InternalOptimizerType * | m_VnlOptimizer |
Wrap of the vnl_amoeba algorithm.
AmoebaOptimizer is a wrapper around the vnl_amoeba algorithm which is an implementation of the Nelder-Meade downhill simplex problem. For most problems, it is a few times slower than a Levenberg-Marquardt algorithm but does not require derivatives of its cost function. It works by creating a simplex (n+1 points in ND space). The cost function is evaluated at each corner of the simplex. The simplex is then modified (by reflecting a corner about the opposite edge, by shrinking the entire simplex, by contracting one edge of the simplex, or by expanding the simplex) in searching for the minimum of the cost function.
The methods AutomaticInitialSimplex() and SetInitialSimplexDelta() control whether the optimizer defines the initial simplex automatically (by constructing a very small simplex around the initial position) or uses a user supplied simplex size.
AmoebaOptimizer can only minimize a function.
Definition at line 49 of file itkAmoebaOptimizer.h.
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Command observer that will interact with the ITK-VNL cost-function adaptor in order to generate iteration events. This will allow to overcome the limitation of VNL optimizers not offering callbacks for every iteration
Definition at line 48 of file itkSingleValuedNonLinearVnlOptimizer.h.
| typedef SmartPointer<const Self> itk::AmoebaOptimizer::ConstPointer |
Reimplemented from itk::SingleValuedNonLinearVnlOptimizer.
Definition at line 57 of file itkAmoebaOptimizer.h.
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protected |
Reimplemented from itk::SingleValuedNonLinearVnlOptimizer.
Definition at line 131 of file itkAmoebaOptimizer.h.
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inherited |
Reimplemented in itk::OnePlusOneEvolutionaryOptimizer, itk::PowellOptimizer, itk::FRPROptimizer, and itk::RegularStepGradientDescentOptimizer.
Definition at line 56 of file itkSingleValuedNonLinearOptimizer.h.
Type of the Cost Function
Reimplemented in itk::OnePlusOneEvolutionaryOptimizer, itk::PowellOptimizer, itk::FRPROptimizer, and itk::RegularStepGradientDescentOptimizer.
Definition at line 55 of file itkSingleValuedNonLinearOptimizer.h.
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Derivative type. It defines a type used to return the cost function derivative.
Definition at line 64 of file itkSingleValuedNonLinearOptimizer.h.
| typedef vnl_amoeba itk::AmoebaOptimizer::InternalOptimizerType |
Internal optimizer type.
Definition at line 73 of file itkAmoebaOptimizer.h.
| typedef vnl_vector<double> itk::AmoebaOptimizer::InternalParametersType |
InternalParameters typedef.
Definition at line 70 of file itkAmoebaOptimizer.h.
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protectedinherited |
Define the type of the reference count according to the target. This allows the use of atomic operations
Definition at line 137 of file itkLightObject.h.
Measure type. It defines a type used to return the cost function value.
Definition at line 60 of file itkSingleValuedNonLinearOptimizer.h.
| typedef Superclass::ParametersType itk::AmoebaOptimizer::ParametersType |
Parameters type. It defines a position in the optimization search space.
Reimplemented from itk::SingleValuedNonLinearOptimizer.
Definition at line 63 of file itkAmoebaOptimizer.h.
Reimplemented from itk::SingleValuedNonLinearVnlOptimizer.
Definition at line 56 of file itkAmoebaOptimizer.h.
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Scale type. This array defines scale to be applied to parameters before being evaluated in the cost function. This allows to map to a more convenient space. In particular this is used to normalize parameter spaces in which some parameters have a different dynamic range.
Reimplemented from itk::Optimizer.
Definition at line 52 of file itkNonLinearOptimizer.h.
Standard "Self" typedef.
Reimplemented from itk::SingleValuedNonLinearVnlOptimizer.
Definition at line 54 of file itkAmoebaOptimizer.h.
Reimplemented from itk::SingleValuedNonLinearVnlOptimizer.
Definition at line 55 of file itkAmoebaOptimizer.h.
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Constructor
Definition at line 29 of file itkAmoebaOptimizer.cxx.
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Destructor
Definition at line 46 of file itkAmoebaOptimizer.cxx.
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private |
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Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects
Definition at line 389 of file itkObject.cxx.
References itk::SubjectImplementation::AddObserver().
Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), itk::ProgressAccumulator::RegisterInternalFilter(), otb::ImageFileWriter< TInputImage >::Update(), and otb::WriterWatcherBase::WriterWatcherBase().
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Definition at line 401 of file itkObject.cxx.
References itk::SubjectImplementation::AddObserver().
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This method is called when itkExceptionMacro executes. It allows the debugger to break on error.
Definition at line 149 of file itkLightObject.cxx.
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Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::SingleValuedNonLinearOptimizer.
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Turn debugging output off.
Definition at line 253 of file itkObject.cxx.
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Turn debugging output on.
Definition at line 242 of file itkObject.cxx.
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Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.
Delete a itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C++ delete method will not work with reference counting.
Definition at line 88 of file itkLightObject.cxx.
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Return Cached Values. These method have the advantage of not triggering a recomputation of the metric value, but it has the disadvantage of returning a value that may not be the one corresponding to the current parameters. For GUI update purposes, this method is a good option, for mathematical validation you should rather call GetValue().
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Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.
Definition at line 414 of file itkObject.cxx.
References itk::Object::GetCommand(), and NULL.
Referenced by itk::Object::GetCommand().
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Get the cost function.
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protectedinherited |
Definition at line 72 of file itkSingleValuedNonLinearVnlOptimizer.cxx.
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protectedinherited |
Definition at line 80 of file itkSingleValuedNonLinearVnlOptimizer.cxx.
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Get current position of the optimization.
Referenced by CommandIterationUpdate::Execute().
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Get the value of the debug flag.
Definition at line 264 of file itkObject.cxx.
Referenced by otb::ogr::ImageReference< double >::GetDebug().
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staticinherited |
Get the value of the global debug output control flag.
Definition at line 381 of file itkObject.cxx.
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Get the position to initialize the optimization.
Referenced by itk::SPSAOptimizer::GuessParameters().
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Methods to define whether the cost function will be maximized or minimized. By default the VNL amoeba optimizer is only a minimizer. Maximization is implemented here by notifying the CostFunctionAdaptor which in its turn will multiply the function values and its derivative by -1.0.
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Reimplemented in otb::ImageMetadataInterfaceBase.
Definition at line 532 of file itkObject.cxx.
References NULL.
Referenced by otb::RenderingImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData(), itk::Brains2MaskImageIO::CanReadFile(), otb::DataNode< TPrecision, VDimension, TValuePrecision >::CopyFieldList(), otb::VectorImage< TPixel, VImageDimension >::CopyInformation(), otb::Image< TPixel, VImageDimension >::CopyInformation(), itk::GDCMImageIO::GetBodyPart(), itk::GDCMImageIO::GetInstitution(), itk::GDCMImageIO::GetManufacturer(), itk::GDCMImageIO::GetModality(), itk::GDCMImageIO::GetModel(), itk::GDCMImageIO::GetNumberOfSeriesInStudy(), itk::GDCMImageIO::GetNumberOfStudyRelatedSeries(), itk::GDCMImageIO::GetPatientAge(), itk::GDCMImageIO::GetPatientDOB(), itk::GDCMImageIO::GetPatientID(), itk::GDCMImageIO::GetPatientName(), itk::GDCMImageIO::GetPatientSex(), itk::GDCMImageIO::GetScanOptions(), itk::GDCMImageIO::GetStudyDate(), itk::GDCMImageIO::GetStudyDescription(), itk::GDCMImageIO::GetStudyID(), itk::GDCMImageIO::GetValueFromTag(), otb::GDALImageIO::InternalReadImageInformation(), itk::GDCMImageIO::InternalReadImageInformation(), otb::GDALImageIO::InternalWriteImageInformation(), otb::RAMDrivenAdaptativeStreamingManager< TImage >::PrepareStreaming(), itk::DICOMImageIO2::Read(), itk::DICOMImageIO2::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), otb::JPEG2000ImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), itk::MRCImageIO::ReadImageInformation(), itk::IPLCommonImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), otb::ImageMetadataInterfaceBase::SetImage(), itk::NiftiImageIO::SetImageIOMetadataFromNIfTI(), otb::VectorDataToLabelImageFilter< TVectorData, TOutputImage >::SetOutputParametersFromImage(), itk::NrrdImageIO::Write(), itk::GDCMImageIO::Write(), and itk::PolygonGroupSpatialObjectXMLFileWriter::WriteFile().
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Reimplemented in otb::ImageMetadataInterfaceBase.
Definition at line 543 of file itkObject.cxx.
References NULL.
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Definition at line 72 of file itkSingleValuedNonLinearVnlOptimizer.h.
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Return this objects modified time.
Return the modification for this object.
Reimplemented in itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::SpatialObject< TDimension >, itk::SpatialObject< 3 >, itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::MeshSpatialObject< TMesh >, and itk::SceneSpatialObject< TSpaceDimension >.
Definition at line 286 of file itkObject.cxx.
Referenced by itk::DeformationFieldSource< TOutputImage >::GetMTime(), itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >::GetMTime(), itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< TDimension >::GetMTime(), itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime(), otb::Function::NoStretchRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), itk::VTKImageExportBase::PipelineModifiedCallback(), and itk::ProcessObject::UpdateOutputInformation().
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Run-time type information (and related methods).
Reimplemented from itk::SingleValuedNonLinearVnlOptimizer.
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The purpose of this method is to get around the lack of const-correctness in VNL cost-functions and optimizers
Definition at line 90 of file itkSingleValuedNonLinearVnlOptimizer.cxx.
| vnl_amoeba * itk::AmoebaOptimizer::GetOptimizer | ( | void | ) |
Method for getting access to the internal optimizer.
Get the Optimizer
Definition at line 284 of file itkAmoebaOptimizer.cxx.
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Gets the reference count on this object.
Definition at line 105 of file itkLightObject.h.
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Get current parameters scaling.
Referenced by itk::SPSAOptimizer::ComputeGradient().
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Report the reason for stopping.
Reimplemented from itk::Optimizer.
Definition at line 53 of file itkAmoebaOptimizer.cxx.
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Get the cost function value at the given parameters.
Get the cost function value at the given parameters
Reimplemented in itk::SPSAOptimizer.
Definition at line 67 of file itkSingleValuedNonLinearOptimizer.cxx.
References itk::ExceptionObject::SetDescription(), and itk::ExceptionObject::SetLocation().
| AmoebaOptimizer::MeasureType itk::AmoebaOptimizer::GetValue | ( | void | ) | const |
Return Current Value
Definition at line 81 of file itkAmoebaOptimizer.cxx.
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inlinestaticinherited |
Definition at line 100 of file itkObject.h.
References itk::Object::SetGlobalWarningDisplay().
Referenced by itk::OutputWindow::DisplayText(), itk::Win32OutputWindow::PromptText(), and itk::Win32OutputWindow::WndProc().
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inlinestaticinherited |
Definition at line 98 of file itkObject.h.
References itk::Object::SetGlobalWarningDisplay().
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Return true if an observer is registered for this event.
Definition at line 467 of file itkObject.cxx.
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Call Execute on all the Commands observing this event id.
Definition at line 446 of file itkObject.cxx.
Referenced by otb::Wrapper::Application::AddProcess(), itk::ParallelSparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::IterateThreaderCallback(), and itk::VTKImageExportBase::UpdateDataCallback().
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Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.
Definition at line 457 of file itkObject.cxx.
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virtualinherited |
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Definition at line 78 of file itkSingleValuedNonLinearVnlOptimizer.h.
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Definition at line 76 of file itkSingleValuedNonLinearVnlOptimizer.h.
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virtualinherited |
Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.
Make sure this object's modified time is greater than all others.
Reimplemented in otb::SVMModel< TValue, TLabel >, otb::SurfaceAdjacencyEffect6SCorrectionSchemeFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, otb::GenericRSTransform< TScalarType, NInputDimensions, NOutputDimensions >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, TBufferConverter >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, MeanShift::VectorBufferConverter >, otb::GCPsToRPCSensorModelImageFilter< TImage >, otb::Polygon< TValue >, otb::ImageRegionAdaptativeSplitter< VImageDimension >, otb::GenericInterpolateImageFunction< TInputImage, TFunction, TBoundaryCondition, TCoordRep >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, otb::PolyLineParametricPathWithValue< TValue, VDimension >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, otb::PolyLineParametricPathWithValue< TValue, 2 >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, otb::PhysicalToRPCSensorModelImageFilter< TImage >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, TFilter >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, RankImageFilter< TInputImage, TInputImage, FlatStructuringElement< ::itk::GetImageDimension< TInputImage >::ImageDimension > > >, itk::NormalizeImageFilter< TInputImage, TOutputImage >, and otb::StatisticsXMLFileReader< TMeasurementVector >.
Definition at line 297 of file itkObject.cxx.
Referenced by otb::Wrapper::InputImageListParameter::AddFromFileName(), otb::Wrapper::InputVectorDataListParameter::AddFromFileName(), otb::Wrapper::InputImageListParameter::AddImage(), otb::Wrapper::InputImageListParameter::AddNullElement(), otb::Wrapper::InputVectorDataListParameter::AddNullElement(), otb::Wrapper::StringListParameter::AddNullElement(), otb::VectorDataModel::AddPointToGeometry(), otb::Wrapper::InputVectorDataListParameter::AddVectorData(), otb::Wrapper::InputImageListParameter::ClearValue(), otb::Wrapper::InputVectorDataListParameter::ClearValue(), otb::VectorDataModel::DeleteGeometry(), otb::VectorDataModel::EndGeometry(), otb::Wrapper::InputImageListParameter::Erase(), otb::Wrapper::InputVectorDataListParameter::Erase(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), otb::ImageWidget< TInputImage >::LinearInterpolationOff(), otb::ImageWidget< TInputImage >::LinearInterpolationOn(), itk::MatrixOffsetTransformBase< TScalarType, NInputDimensions, NOutputDimensions >::MatrixOffsetTransformBase(), otb::ogr::ImageReference< double >::Modified(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetAutoMinMax(), otb::BlendingImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetBlendingFunction(), otb::ImageLayerGenerator< TImageLayer >::SetBlendingFunction(), otb::TileMapImageIO::SetCacheDirectory(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetChannelList(), itk::LBFGSBOptimizer::SetCostFunction(), itk::MINC2ImageIO::SetDimensionName(), itk::ImageIOBase::SetDimensions(), itk::ImageIOBase::SetDirection(), otb::Wrapper::InputImageListParameter::SetImageList(), itk::GDCMSeriesFileNames::SetInputDirectory(), otb::HistogramStatisticsFunction< TInputHistogram, TOutput >::SetInputHistogram(), otb::ImageToGenericRSOutputParameters< TImage >::SetInputKeywordList(), otb::Wrapper::InputVectorDataListParameter::SetListFromFileName(), otb::Wrapper::InputImageListParameter::SetListFromFileName(), otb::Function::RenderingFunction< TPixel, TRGBPixel >::SetListSample(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), otb::Wrapper::InputImageListParameter::SetNthFileName(), otb::Wrapper::InputVectorDataListParameter::SetNthFileName(), itk::ImageIOBase::SetNumberOfDimensions(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ImageIOBase::SetOrigin(), otb::ImageToGenericRSOutputParameters< TImage >::SetOutputProjectionRef(), otb::MapProjectionAdapter::SetParameter(), otb::Function::GaussianRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetParameters(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetParameters(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), otb::ImageLayerGenerator< TImageLayer >::SetRenderingFunction(), otb::RenderingImageFilter< TInputImage, TOutputImage >::SetRenderingFunction(), itk::ImageIOBase::SetSpacing(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation(), otb::Wrapper::OutputFilenameParameter::SetValue(), otb::Wrapper::InputFilenameParameter::SetValue(), otb::Wrapper::ListViewParameter::SetValue(), otb::Wrapper::ChoiceParameter::SetValue(), otb::Wrapper::InputVectorDataListParameter::SetVectorDataList(), and otb::MapProjectionAdapter::SetWkt().
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Method for creation through the object factory.
Reimplemented from itk::SingleValuedNonLinearOptimizer.
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Reimplemented from itk::SingleValuedNonLinearVnlOptimizer.
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Cause the object to print itself out.
Avoid DLL boundary problems. This function will be common to all itk objects. It just calls the header/self/trailer virtual print methods, which can be overriden by subclasses (any itk object).
Definition at line 135 of file itkLightObject.cxx.
References itk::Indent::GetNextIndent().
Referenced by itk::operator<<().
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Define a default print header for all objects.
Definition at line 320 of file itkLightObject.cxx.
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Definition at line 478 of file itkObject.cxx.
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PrintSelf
Reimplemented from itk::SingleValuedNonLinearVnlOptimizer.
Definition at line 63 of file itkAmoebaOptimizer.cxx.
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Define a default print trailer for all objects.
Definition at line 331 of file itkLightObject.cxx.
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Increase the reference count (mark as used by another object).
Reimplemented from itk::LightObject.
Definition at line 309 of file itkObject.cxx.
Referenced by itk::ObjectFactoryBase::RegisterFactory().
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Remove all observers .
Definition at line 435 of file itkObject.cxx.
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Remove the observer with this tag value.
Definition at line 425 of file itkObject.cxx.
Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), and otb::ImageFileWriter< TInputImage >::Update().
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Set/Get the mode which determines how the amoeba algorithm defines the initial simplex. Default is AutomaticInitialSimplexOn. If AutomaticInitialSimplex is on, the initial simplex is created with a default size. If AutomaticInitialSimplex is off, then InitialSimplexDelta will be used to define the initial simplex, setting the ith corner of the simplex as [x0[0], x0[1], ..., x0[i]+InitialSimplexDelta[i], ..., x0[d-1]].
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Set the cost function.
Connect a Cost Function
Definition at line 37 of file itkSingleValuedNonLinearOptimizer.cxx.
References itk::CostFunction::GetNumberOfParameters().
Referenced by SetCostFunction().
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Plug in a Cost Function into the optimizer
Connect a Cost Function
Implements itk::SingleValuedNonLinearVnlOptimizer.
Definition at line 164 of file itkAmoebaOptimizer.cxx.
References itk::CostFunction::GetNumberOfParameters(), and itk::SingleValuedNonLinearOptimizer::SetCostFunction().
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Definition at line 52 of file itkSingleValuedNonLinearVnlOptimizer.cxx.
References itk::SingleValuedVnlCostFunctionAdaptor::AddObserver().
Referenced by itk::LBFGSBOptimizer::SetCostFunction().
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Set the value of the debug flag. A non-zero value turns debugging on.
Definition at line 275 of file itkObject.cxx.
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Set the function convergence tolerance
Definition at line 143 of file itkAmoebaOptimizer.cxx.
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This is a global flag that controls whether any debug, warning or error messages are displayed.
Set the value of the global debug output control flag.
Definition at line 370 of file itkObject.cxx.
Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().
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Set the position to initialize the optimization.
Set the initial position
Definition at line 53 of file itkOptimizer.cxx.
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Set/Get the deltas that are used to define the initial simplex when AutomaticInitialSimplex is off.
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Set/Get the maximum number of iterations. The optimization algorithm will terminate after the maximum number of iterations has been reached. The default value is 500.
Set the maximum number of iterations
Definition at line 100 of file itkAmoebaOptimizer.cxx.
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Reimplemented in otb::ImageMetadataInterfaceBase.
Definition at line 554 of file itkObject.cxx.
References NULL.
Referenced by otb::VectorImage< TPixel, VImageDimension >::CopyInformation(), and otb::Image< TPixel, VImageDimension >::CopyInformation().
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Definition at line 74 of file itkSingleValuedNonLinearVnlOptimizer.h.
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The optimization algorithm will terminate when the simplex diameter and the difference in cost function at the corners of the simplex falls below user specified thresholds. The simplex diameter threshold is set via method SetParametersConvergenceTolerance() with the default value being 1e-8. The cost function convergence threshold is set via method SetFunctionConvergenceTolerance() with the default value being 1e-4.
Set the parameters convergence tolerance
Definition at line 121 of file itkAmoebaOptimizer.cxx.
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Sets the reference count (use with care)
If there is a delete method, invoke it.
Reimplemented from itk::LightObject.
Definition at line 347 of file itkObject.cxx.
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Set current parameters scaling.
Set scaling as an array of factors
Definition at line 40 of file itkOptimizer.cxx.
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Start optimization with an initial value.
Start the optimization
Reimplemented from itk::Optimizer.
Definition at line 198 of file itkAmoebaOptimizer.cxx.
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Decrease the reference count (release by another object).
If there is a delete method, invoke it.
Reimplemented from itk::LightObject.
Definition at line 324 of file itkObject.cxx.
Referenced by itk::Object::New(), and itk::ObjectFactoryBase::UnRegisterFactory().
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Definition at line 143 of file itkAmoebaOptimizer.h.
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Definition at line 80 of file itkSingleValuedNonLinearOptimizer.h.
Referenced by itk::SPSAOptimizer::GuessParameters(), and itk::LBFGSBOptimizer::SetCostFunction().
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Definition at line 98 of file itkOptimizer.h.
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Definition at line 141 of file itkAmoebaOptimizer.h.
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Definition at line 144 of file itkAmoebaOptimizer.h.
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Definition at line 139 of file itkAmoebaOptimizer.h.
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Definition at line 137 of file itkAmoebaOptimizer.h.
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Definition at line 140 of file itkAmoebaOptimizer.h.
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Number of uses of this object by other objects.
Definition at line 141 of file itkLightObject.h.
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Mutex lock to protect modification to the reference count
Definition at line 144 of file itkLightObject.h.
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Definition at line 93 of file itkOptimizer.h.
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Definition at line 146 of file itkAmoebaOptimizer.h.
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Definition at line 138 of file itkAmoebaOptimizer.h.