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itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder > Class Template Referenceabstract

Deformable transform using a BSpline representation. More...

#include <itkBSplineDeformableTransform.h>

+ Inheritance diagram for itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >:
+ Collaboration diagram for itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >:

Public Types

typedef
BulkTransformType::ConstPointer 
BulkTransformPointer
 
typedef Transform< ScalarType,
itkGetStaticConstMacro(SpaceDimension),
itkGetStaticConstMacro(SpaceDimension)> 
BulkTransformType
 
typedef
Superclass::CoefficientImageArray 
CoefficientImageArray
 
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::ContinuousIndexType 
ContinuousIndexType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef Matrix< double,
itkGetStaticConstMacro(OutputSpaceDimension),
itkGetStaticConstMacro(InputSpaceDimension)> 
DirectionChangeMatrix
 
typedef Superclass::DirectionType DirectionType
 
typedef Superclass::ImagePointer ImagePointer
 
typedef Superclass::ImageType ImageType
 
typedef Superclass::IndexType IndexType
 
typedef
Superclass::InputCovariantVectorType 
InputCovariantVectorType
 
typedef DiffusionTensor3D
< TScalar > 
InputDiffusionTensor3DType
 
typedef Matrix< double,
itkGetStaticConstMacro(InputSpaceDimension),
itkGetStaticConstMacro(InputSpaceDimension)> 
InputDirectionMatrix
 
typedef Point< TScalar,
itkGetStaticConstMacro(SpaceDimension)> 
InputPointType
 
typedef
SymmetricSecondRankTensor
< TScalar, NInputDimensions > 
InputSymmetricSecondRankTensorType
 
typedef VariableLengthVector
< TScalar > 
InputVectorPixelType
 
typedef Superclass::InputVectorType InputVectorType
 
typedef
Superclass::InputVnlVectorType 
InputVnlVectorType
 
typedef
InverseTransformBaseType::Pointer 
InverseTransformBasePointer
 
typedef Transform< TScalar,
NOutputDimensions,
NInputDimensions > 
InverseTransformBaseType
 
typedef Superclass::JacobianType JacobianType
 
typedef Matrix< TScalar,
itkGetStaticConstMacro(OutputSpaceDimension),
itkGetStaticConstMacro(InputSpaceDimension)> 
MatrixType
 
typedef Superclass::MeshSizeType MeshSizeType
 
typedef
Superclass::NumberOfParametersType 
NumberOfParametersType
 
typedef Superclass::OriginType OriginType
 
typedef
Superclass::OutputCovariantVectorType 
OutputCovariantVectorType
 
typedef DiffusionTensor3D
< TScalar > 
OutputDiffusionTensor3DType
 
typedef Matrix< double,
itkGetStaticConstMacro(OutputSpaceDimension),
itkGetStaticConstMacro(OutputSpaceDimension)> 
OutputDirectionMatrix
 
typedef Point< TScalar,
itkGetStaticConstMacro(SpaceDimension)> 
OutputPointType
 
typedef
SymmetricSecondRankTensor
< TScalar, NOutputDimensions > 
OutputSymmetricSecondRankTensorType
 
typedef VariableLengthVector
< TScalar > 
OutputVectorPixelType
 
typedef
Superclass::OutputVectorType 
OutputVectorType
 
typedef
Superclass::OutputVnlVectorType 
OutputVnlVectorType
 
typedef
Superclass::ParameterIndexArrayType 
ParameterIndexArrayType
 
typedef Superclass::ParametersType ParametersType
 
typedef
Superclass::ParametersValueType 
ParametersValueType
 
typedef Superclass::SpacingType PhysicalDimensionsType
 
typedef Superclass::PixelType PixelType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RegionType RegionType
 
typedef Superclass::ScalarType ScalarType
 
typedef BSplineDeformableTransform Self
 
typedef Superclass::SizeType SizeType
 
typedef Superclass::SpacingType SpacingType
 
typedef BSplineBaseTransform
< TScalar, NDimensions,
VSplineOrder > 
Superclass
 
typedef
Superclass::TransformCategoryType 
TransformCategoryType
 
typedef
Superclass::WeightsFunctionType 
WeightsFunctionType
 
typedef Superclass::WeightsType WeightsType
 

Public Member Functions

unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void ComputeInverseJacobianWithRespectToPosition (const InputPointType &x, JacobianType &jacobian) const
 
void ComputeJacobianFromBSplineWeightsWithRespectToPosition (const InputPointType &, WeightsType &, ParameterIndexArrayType &) const
 
virtual void ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const
 
virtual void ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const =0
 
virtual void ComputeJacobianWithRespectToParametersCachedTemporaries (const InputPointType &p, JacobianType &jacobian, JacobianType &) const
 
virtual void ComputeJacobianWithRespectToPosition (const InputPointType &, JacobianType &) const
 
virtual void ComputeJacobianWithRespectToPosition (const InputPointType &, JacobianType &) const
 
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
virtual void Delete ()
 
virtual const BulkTransformTypeGetBulkTransform ()
 
const CoefficientImageArray GetCoefficientImages () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
virtual const ParametersTypeGetFixedParameters () const
 
virtual DirectionType GetGridDirection () const
 
virtual OriginType GetGridOrigin () const
 
virtual RegionType GetGridRegion () const
 
virtual SpacingType GetGridSpacing () const
 
unsigned int GetInputSpaceDimension (void) const
 
bool GetInverse (Self *) const
 
virtual InverseTransformBasePointer GetInverseTransform () const
 
MetaDataDictionaryGetMetaDataDictionary (void)
 
const MetaDataDictionaryGetMetaDataDictionary (void) const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const char * GetNameOfClass () const
 
unsigned int GetNumberOfAffectedWeights () const
 
virtual NumberOfParametersType GetNumberOfLocalParameters () const
 
virtual NumberOfParametersType GetNumberOfParameters () const
 
NumberOfParametersType GetNumberOfParametersPerDimension () const
 
unsigned long GetNumberOfWeights () const
 
virtual const std::string & GetObjectName ()
 
unsigned int GetOutputSpaceDimension (void) const
 
virtual const ParametersTypeGetParameters () const
 
virtual int GetReferenceCount () const
 
virtual const TimeStampGetTimeStamp () const
 
virtual TransformCategoryType GetTransformCategory () const
 
virtual std::string GetTransformTypeAsString () const
 
virtual const RegionTypeGetValidRegion ()
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual bool IsLinear () const
 
 itkCloneMacro (Self)
 
virtual void Modified () const
 
void Print (std::ostream &os, Indent indent=0) const
 
virtual void Register () const ITK_OVERRIDE
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
virtual void SetBulkTransform (const BulkTransformType *_arg)
 
virtual void SetCoefficientImages (const CoefficientImageArray &images)
 
void SetDebug (bool debugFlag) const
 
virtual void SetFixedParameters (const ParametersType &parameters)
 
virtual void SetFixedParameters (const ParametersType &)=0
 
virtual void SetGridDirection (const DirectionType &)
 
virtual void SetGridOrigin (const OriginType &)
 
virtual void SetGridRegion (const RegionType &)
 
virtual void SetGridSpacing (const SpacingType &)
 
void SetIdentity ()
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetObjectName (std::string _arg)
 
void SetParameters (const ParametersType &parameters)
 
virtual void SetParameters (const ParametersType &)=0
 
void SetParametersByValue (const ParametersType &parameters)
 
virtual void SetParametersByValue (const ParametersType &p)
 
virtual void SetReferenceCount (int) ITK_OVERRIDE
 
virtual OutputCovariantVectorType TransformCovariantVector (const InputCovariantVectorType &) const
 
virtual OutputCovariantVectorType TransformCovariantVector (const InputCovariantVectorType &vector, const InputPointType &point) const
 
virtual OutputVectorPixelType TransformCovariantVector (const InputVectorPixelType &) const
 
virtual OutputCovariantVectorType TransformCovariantVector (const InputCovariantVectorType &) const
 
virtual OutputVectorPixelType TransformCovariantVector (const InputVectorPixelType &vector, const InputPointType &point) const
 
virtual OutputDiffusionTensor3DType TransformDiffusionTensor3D (const InputDiffusionTensor3DType &) const
 
virtual OutputDiffusionTensor3DType TransformDiffusionTensor3D (const InputDiffusionTensor3DType &tensor, const InputPointType &point) const
 
virtual OutputVectorPixelType TransformDiffusionTensor3D (const InputVectorPixelType &) const
 
virtual OutputVectorPixelType TransformDiffusionTensor3D (const InputVectorPixelType &tensor, const InputPointType &point) const
 
virtual OutputPointType TransformPoint (const InputPointType &) const =0
 
OutputPointType TransformPoint (const InputPointType &point) const
 
virtual void TransformPoint (const InputPointType &inputPoint, OutputPointType &outputPoint, WeightsType &weights, ParameterIndexArrayType &indices, bool &inside) const
 
virtual
OutputSymmetricSecondRankTensorType 
TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &tensor, const InputPointType &point) const
 
virtual
OutputSymmetricSecondRankTensorType 
TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &) const
 
virtual OutputVectorPixelType TransformSymmetricSecondRankTensor (const InputVectorPixelType &) const
 
virtual OutputVectorPixelType TransformSymmetricSecondRankTensor (const InputVectorPixelType &tensor, const InputPointType &point) const
 
virtual OutputVectorType TransformVector (const InputVectorType &) const
 
virtual OutputVectorType TransformVector (const InputVectorType &vector, const InputPointType &point) const
 
virtual OutputVnlVectorType TransformVector (const InputVnlVectorType &) const
 
virtual OutputVnlVectorType TransformVector (const InputVnlVectorType &vector, const InputPointType &point) const
 
virtual OutputVectorPixelType TransformVector (const InputVectorPixelType &) const
 
virtual OutputVectorPixelType TransformVector (const InputVectorPixelType &vector, const InputPointType &point) const
 
virtual OutputVectorType TransformVector (const InputVectorType &) const
 
virtual OutputVnlVectorType TransformVector (const InputVnlVectorType &) const
 
virtual void UnRegister () const ITK_OVERRIDE
 
virtual void UpdateTransformParameters (const DerivativeType &update, TScalar factor=1.0)
 
virtual void UpdateTransformParameters (const DerivativeType &update, TScalar factor=1.0)
 

Static Public Member Functions

static void BreakOnError ()
 
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 

Static Public Attributes

static const unsigned int InputSpaceDimension
 
static const unsigned int OutputSpaceDimension
 
static const unsigned int SpaceDimension = NDimensions
 
static const unsigned int SplineOrder = VSplineOrder
 

Protected Types

typedef int InternalReferenceCountType
 

Protected Member Functions

 BSplineDeformableTransform ()
 
virtual ~BSplineDeformableTransform ()
 
virtual LightObject::Pointer InternalClone () const
 
 itkGetModifiableObjectMacro (WeightsFunction, WeightsFunctionType)
 
OutputDiffusionTensor3DType PreservationOfPrincipalDirectionDiffusionTensor3DReorientation (const InputDiffusionTensor3DType, const JacobianType) const
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
void PrintSelf (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
void SetFixedParametersFromTransformDomainInformation () const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual void SetWeightsFunction (WeightsFunctionType *_arg)
 
void WrapAsImages ()
 

Protected Attributes

CoefficientImageArray m_CoefficientImages
 
DirectionChangeMatrix m_DirectionChange
 
ParametersType m_FixedParameters
 
ParametersType m_InternalParametersBuffer
 
ParametersType m_Parameters
 
InternalReferenceCountType m_ReferenceCount
 
SimpleFastMutexLock m_ReferenceCountLock
 
WeightsFunctionType::Pointer m_WeightsFunction
 

Private Member Functions

 BSplineDeformableTransform (const Self &)
 
virtual bool InsideValidRegion (ContinuousIndexType &) const
 
void operator= (const Self &)
 
virtual void SetCoefficientImageInformationFromFixedParameters ()
 
virtual void SetFixedParametersGridDirectionFromTransformDomainInformation () const
 
virtual void SetFixedParametersGridOriginFromTransformDomainInformation () const
 
virtual void SetFixedParametersGridSizeFromTransformDomainInformation () const
 
virtual void SetFixedParametersGridSpacingFromTransformDomainInformation () const
 
void UpdateValidGridRegion ()
 

Private Attributes

BulkTransformPointer m_BulkTransform
 
const DirectionTypem_GridDirection
 
const OriginTypem_GridOrigin
 
const RegionTypem_GridRegion
 
const SpacingTypem_GridSpacing
 
unsigned long m_Offset
 
bool m_SplineOrderOdd
 
RegionType m_ValidRegion
 
IndexType m_ValidRegionFirst
 
IndexType m_ValidRegionLast
 

Detailed Description

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
class itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >

Deformable transform using a BSpline representation.

Note
BSplineTransform is a newer version of this class, and it is preferred.

This class encapsulates a deformable transform of points from one N-dimensional space to another N-dimensional space. The deformation field is modelled using B-splines. A deformation is defined on a sparse regular grid of control points $ \vec{\lambda}_j $ and is varied by defining a deformation $ \vec{g}(\vec{\lambda}_j) $ of each control point. The deformation $ D(\vec{x}) $ at any point $ \vec{x} $ is obtained by using a B-spline interpolation kernel.

The deformation field grid is defined by a user specified GridRegion, GridSpacing and GridOrigin. Each grid/control point has associated with it N deformation coefficients $ \vec{\delta}_j $, representing the N directional components of the deformation. Deformation outside the grid plus support region for the BSpline interpolation is assumed to be zero.

Additionally, the user can specified an addition bulk transform $ B $ such that the transformed point is given by:

\[ \vec{y} = B(\vec{x}) + D(\vec{x}) \]

The parameters for this transform is an N x N-D grid of spline coefficients. The user specifies the parameters as one flat array: each N-D grid is represented by an array in the same way an N-D image is represented in the buffer; the N arrays are then concatentated together on form a single array.

For efficiency, this transform does not make a copy of the parameters. It only keeps a pointer to the input parameters and assumes that the memory is managed by the caller.

The following illustrates the typical usage of this class:

* typedef BSplineDeformableTransform<double,2,3> TransformType;
* TransformType::Pointer transform = TransformType::New();
*
* transform->SetGridRegion( region );
* transform->SetGridSpacing( spacing );
* transform->SetGridOrigin( origin );
*
* // NB: the region must be set first before setting the parameters
*
* TransformType::ParametersType parameters(
*                                       transform->GetNumberOfParameters() );
*
* // Fill the parameters with values
*
* transform->SetParameters( parameters )
*
* outputPoint = transform->TransformPoint( inputPoint );
*
* 

An alternative way to set the B-spline coefficients is via array of images. The grid region, spacing and origin information is taken directly from the first image. It is assumed that the subsequent images are the same buffered region. The following illustrates the API:

*
* TransformType::ImageConstPointer images[2];
*
* // Fill the images up with values
*
* transform->SetCoefficientImages( images );
* outputPoint = transform->TransformPoint( inputPoint );
*
* 

Warning: use either the SetParameters() or SetCoefficientImages() API. Mixing the two modes may results in unexpected results.

The class is templated coordinate representation type (float or double), the space dimension and the spline order.

See Also
BSplineTransform

{Registration/ImageRegistrationMethodBSpline,A global registration of two images}

Definition at line 115 of file itkBSplineDeformableTransform.h.

Member Typedef Documentation

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef BulkTransformType::ConstPointer itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::BulkTransformPointer

Definition at line 300 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Transform<ScalarType, itkGetStaticConstMacro(SpaceDimension), itkGetStaticConstMacro(SpaceDimension)> itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::BulkTransformType

Definition at line 296 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::CoefficientImageArray itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::CoefficientImageArray

Definition at line 204 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef SmartPointer<const Self> itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::ConstPointer

Definition at line 123 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::ContinuousIndexType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::ContinuousIndexType

Definition at line 244 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::DerivativeType itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::DerivativeType
inherited

Definition at line 192 of file itkBSplineBaseTransform.h.

typedef Matrix<double, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)> itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::DirectionChangeMatrix
inherited

Definition at line 180 of file itkTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::DirectionType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::DirectionType

Definition at line 237 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::ImagePointer itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::ImagePointer

Definition at line 203 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::ImageType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::ImageType

Definition at line 202 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::IndexType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::IndexType

Definition at line 234 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::InputCovariantVectorType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::InputCovariantVectorType

Standard covariant vector type for this class.

Definition at line 170 of file itkBSplineDeformableTransform.h.

typedef DiffusionTensor3D<TScalar> itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::InputDiffusionTensor3DType
inherited

Definition at line 140 of file itkTransform.h.

typedef Matrix<double, itkGetStaticConstMacro(InputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)> itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::InputDirectionMatrix
inherited

Definition at line 176 of file itkTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Point<TScalar, itkGetStaticConstMacro( SpaceDimension )> itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::InputPointType

Standard coordinate point type for this class.

Definition at line 178 of file itkBSplineDeformableTransform.h.

typedef SymmetricSecondRankTensor<TScalar,NInputDimensions> itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::InputSymmetricSecondRankTensorType
inherited

Definition at line 135 of file itkTransform.h.

typedef VariableLengthVector<TScalar> itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::InputVectorPixelType
inherited

Standard variable length vector type for this class this provides an interface for the VectorImage class

Definition at line 130 of file itkTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::InputVectorType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::InputVectorType

Standard vector type for this class.

Definition at line 166 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::InputVnlVectorType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::InputVnlVectorType

Standard vnl_vector type for this class.

Definition at line 174 of file itkBSplineDeformableTransform.h.

typedef int itk::LightObject::InternalReferenceCountType
protectedinherited

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 152 of file itkLightObject.h.

typedef InverseTransformBaseType::Pointer itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::InverseTransformBasePointer
inherited

Definition at line 163 of file itkTransform.h.

typedef Transform< TScalar, NOutputDimensions, NInputDimensions> itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::InverseTransformBaseType
inherited

Base inverse transform type. This type should not be changed to the concrete inverse transform type or inheritance would be lost.

Definition at line 160 of file itkTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::JacobianType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::JacobianType

Standard Jacobian container.

Definition at line 160 of file itkBSplineDeformableTransform.h.

typedef Matrix<TScalar, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)> itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::MatrixType
inherited

Definition at line 167 of file itkTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::MeshSizeType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::MeshSizeType

Definition at line 272 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::NumberOfParametersType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::NumberOfParametersType

The number of parameters defininig this transform.

Definition at line 163 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::OriginType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::OriginType

Definition at line 238 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::OutputCovariantVectorType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::OutputCovariantVectorType

Definition at line 171 of file itkBSplineDeformableTransform.h.

typedef DiffusionTensor3D<TScalar> itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::OutputDiffusionTensor3DType
inherited

Definition at line 141 of file itkTransform.h.

typedef Matrix<double, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(OutputSpaceDimension)> itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::OutputDirectionMatrix
inherited

Definition at line 172 of file itkTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Point<TScalar, itkGetStaticConstMacro( SpaceDimension )> itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::OutputPointType

Definition at line 179 of file itkBSplineDeformableTransform.h.

typedef SymmetricSecondRankTensor<TScalar,NOutputDimensions> itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::OutputSymmetricSecondRankTensorType
inherited

Definition at line 137 of file itkTransform.h.

typedef VariableLengthVector<TScalar> itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::OutputVectorPixelType
inherited

Definition at line 131 of file itkTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::OutputVectorType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::OutputVectorType

Definition at line 167 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::OutputVnlVectorType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::OutputVnlVectorType

Definition at line 175 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::ParameterIndexArrayType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::ParameterIndexArrayType

Parameter index array type.

Definition at line 247 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::ParametersType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::ParametersType

Standard parameters container.

Definition at line 157 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::ParametersValueType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::ParametersValueType

Parameters as SpaceDimension number of images.

Definition at line 201 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::SpacingType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::PhysicalDimensionsType

Definition at line 269 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::PixelType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::PixelType

Definition at line 270 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef SmartPointer<Self> itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::Pointer

Definition at line 122 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::RegionType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::RegionType

Typedefs for specifying the extent of the grid.

Definition at line 232 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::ScalarType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::ScalarType

Standard scalar type for this class.

Definition at line 154 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef BSplineDeformableTransform itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::Self

Standard class typedefs.

Definition at line 120 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::SizeType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::SizeType

Definition at line 235 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::SpacingType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::SpacingType

Definition at line 236 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef BSplineBaseTransform<TScalar,NDimensions,VSplineOrder> itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::Superclass

Definition at line 121 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::TransformCategoryType itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::TransformCategoryType
inherited

Transform category type.

Definition at line 67 of file itkBSplineBaseTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::WeightsFunctionType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::WeightsFunctionType

Interpolation weights function type.

Definition at line 241 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::WeightsType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::WeightsType

Definition at line 243 of file itkBSplineDeformableTransform.h.

Constructor & Destructor Documentation

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::BSplineDeformableTransform ( )
protected

Fixed Parameters store the following information: Grid Size Grid Origin Grid Spacing Grid Direction The size of these is equal to the NInputDimensions

Definition at line 33 of file itkBSplineDeformableTransform.hxx.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::~BSplineDeformableTransform ( )
protectedvirtual

Definition at line 79 of file itkBSplineDeformableTransform.hxx.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::BSplineDeformableTransform ( const Self )
private

Member Function Documentation

unsigned long itk::Object::AddObserver ( const EventObject event,
Command cmd 
)
inherited

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

Definition at line 486 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), itk::ProgressAccumulator::RegisterInternalFilter(), otb::ImageFileWriter< TInputImage >::Update(), and otb::WriterWatcherBase::WriterWatcherBase().

unsigned long itk::Object::AddObserver ( const EventObject event,
Command cmd 
) const
inherited

Definition at line 497 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

void itk::LightObject::BreakOnError ( )
staticinherited

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

Definition at line 150 of file itkLightObject.cxx.

virtual void itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::ComputeInverseJacobianWithRespectToPosition ( const InputPointType x,
JacobianType jacobian 
) const
virtualinherited

This provides the ability to get a local jacobian value in a dense/local transform, e.g. DisplacementFieldTransform. For such transforms it would be unclear what parameters would refer to. Generally, global transforms should return an indentity jacobian since there is no change with respect to position.

ComputeInverseJacobianWithRespectToPosition

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::ComputeJacobianFromBSplineWeightsWithRespectToPosition ( const InputPointType point,
WeightsType weights,
ParameterIndexArrayType indexes 
) const
inherited

Get Jacobian at a point. A very specialized function just for BSplines

Definition at line 263 of file itkBSplineBaseTransform.hxx.

References itk::Array< TValue >::Fill(), itk::Size< VDimension >::Fill(), itk::ImageRegion< VImageDimension >::SetIndex(), and itk::ImageRegion< VImageDimension >::SetSize().

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::ComputeJacobianWithRespectToParameters ( const InputPointType point,
JacobianType jacobian 
) const
virtual
virtual void itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::ComputeJacobianWithRespectToParameters ( const InputPointType ,
JacobianType  
) const
pure virtualinherited

Compute the Jacobian of the transformation

This method computes the Jacobian matrix of the transformation at a given input point. The rank of the Jacobian will also indicate if the transform is invertible at this point.

The Jacobian is be expressed as a matrix of partial derivatives of the output point components with respect to the parameters that defined the transform:

\[ J=\left[ \begin{array}{cccc} \frac{\partial x_{1}}{\partial p_{1}} & \frac{\partial x_{1}}{\partial p_{2}} & \cdots & \frac{\partial x_{1}}{\partial p_{m}}\\ \frac{\partial x_{2}}{\partial p_{1}} & \frac{\partial x_{2}}{\partial p_{2}} & \cdots & \frac{\partial x_{2}}{\partial p_{m}}\\ \vdots & \vdots & \ddots & \vdots \\ \frac{\partial x_{n}}{\partial p_{1}} & \frac{\partial x_{n}}{\partial p_{2}} & \cdots & \frac{\partial x_{n}}{\partial p_{m}} \end{array}\right] \]

This is also used for efficient computation of a point-local jacobian for dense transforms. jacobian is assumed to be thread-local variable, otherwise memory corruption will most likely occur during multi-threading. To avoid repeatitive memory allocation, pass in 'jacobian' with its size already set.

virtual void itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::ComputeJacobianWithRespectToParametersCachedTemporaries ( const InputPointType p,
JacobianType jacobian,
JacobianType  
) const
inlinevirtualinherited
template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual void itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::ComputeJacobianWithRespectToPosition ( const InputPointType ,
JacobianType  
) const
inlinevirtualinherited
virtual void itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::ComputeJacobianWithRespectToPosition ( const InputPointType ,
JacobianType  
) const
inlinevirtualinherited

This provides the ability to get a local jacobian value in a dense/local transform, e.g. DisplacementFieldTransform. For such transforms it would be unclear what parameters would refer to. Generally, global transforms should return an indentity jacobian since there is no change with respect to position.

Definition at line 513 of file itkTransform.h.

References itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetNameOfClass().

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual ::itk::LightObject::Pointer itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::CreateAnother ( void  ) const
inlinevirtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

Definition at line 131 of file itkBSplineDeformableTransform.h.

References itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::GetBulkTransform(), itk::SmartPointer< TObjectType >::GetPointer(), and itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::New().

void itk::Object::DebugOff ( ) const
virtualinherited

Turn debugging output off.

Definition at line 327 of file itkObject.cxx.

void itk::Object::DebugOn ( ) const
virtualinherited

Turn debugging output on.

Definition at line 317 of file itkObject.cxx.

void itk::LightObject::Delete ( )
virtualinherited

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

Delete a itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C++ delete method will not work with reference counting.

Definition at line 91 of file itkLightObject.cxx.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual const BulkTransformType* itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::GetBulkTransform ( )
virtual
template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
const CoefficientImageArray itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::GetCoefficientImages ( ) const
inlineinherited

Get the array of coefficient images.

Definition at line 187 of file itkBSplineBaseTransform.h.

References itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::m_CoefficientImages.

Command * itk::Object::GetCommand ( unsigned long  tag)
inherited

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to assign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

Definition at line 509 of file itkObject.cxx.

References itk::Object::GetCommand().

Referenced by itk::Object::GetCommand().

bool itk::Object::GetDebug ( ) const
inherited

Get the value of the debug flag.

Definition at line 337 of file itkObject.cxx.

Referenced by otb::ogr::ImageReference< double >::GetDebug().

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
const BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::ParametersType & itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::GetFixedParameters ( void  ) const
virtualinherited

Get the Transformation Fixed Parameters.

Reimplemented from itk::Transform< TScalar, NDimensions, NDimensions >.

Definition at line 233 of file itkBSplineBaseTransform.hxx.

bool itk::Object::GetGlobalWarningDisplay ( )
staticinherited

Get the value of the global debug output control flag.

Definition at line 479 of file itkObject.cxx.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual DirectionType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::GetGridDirection ( ) const
virtual

Function to retrieve the transform domain direction.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual OriginType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::GetGridOrigin ( ) const
virtual

Function to retrieve the transform domain origin.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual RegionType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::GetGridRegion ( ) const
virtual

Function to retrieve the transform domain mesh size.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual SpacingType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::GetGridSpacing ( ) const
virtual

This method retrieve the grid spacing or resolution.

unsigned int itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetInputSpaceDimension ( void  ) const
inlinevirtualinherited

Get the size of the input space

Implements itk::TransformBaseTemplate< TScalar >.

Definition at line 102 of file itkTransform.h.

bool itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetInverse ( Self ) const
inlineinherited

Returns a boolean indicating whether it is possible or not to compute the inverse of this current Transform. If it is possible, then the inverse of the transform is returned in the inverseTransform variable passed by the user. The inverse is recomputed if this current transform has been modified. This method is intended to be overriden as needed by derived classes.

Definition at line 410 of file itkTransform.h.

virtual InverseTransformBasePointer itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetInverseTransform ( ) const
inlinevirtualinherited

Return an inverse of this transform. If the inverse has not been implemented, return NULL. The type of the inverse transform does not necessarily need to match the type of the forward transform. This allows one to return a numeric inverse transform instead.

Reimplemented in itk::DisplacementFieldTransform< TScalar, NDimensions >, itk::CompositeTransform< TScalar, NDimensions >, itk::IdentityTransform< TScalar, NDimensions >, itk::TranslationTransform< TScalar, NDimensions >, itk::VelocityFieldTransform< TScalar, NDimensions >, and itk::ConstantVelocityFieldTransform< TScalar, NDimensions >.

Definition at line 421 of file itkTransform.h.

MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  )
inherited
const MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  ) const
inherited
Returns
A constant reference to this objects MetaDataDictionary.

Definition at line 636 of file itkObject.cxx.

ModifiedTimeType itk::Object::GetMTime ( void  ) const
virtualinherited

Return this objects modified time.

Return the modification for this object.

Reimplemented in itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexConjugatePixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType, TTransformPrecisionType >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::SpatialObject< VDimension >, itk::SpatialObject< 3 >, itk::SpatialObject< TDimension >, itk::SpatialObject< TMesh::PointDimension >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::InverseDisplacementFieldImageFilter< TInputImage, TOutputImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::TransformToDisplacementFieldSource< TOutputImage, TTransformPrecisionType >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::LandmarkDisplacementFieldSource< TOutputImage >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::MeshSpatialObject< TMesh >, itk::DataObjectDecorator< T >, and itk::SceneSpatialObject< TSpaceDimension >.

Definition at line 357 of file itkObject.cxx.

Referenced by itk::LandmarkDisplacementFieldSource< TOutputImage >::GetMTime(), itk::DeformationFieldSource< TOutputImage >::GetMTime(), itk::TransformToDisplacementFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::InverseDisplacementFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >::GetMTime(), itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< VDimension >::GetMTime(), itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType, TTransformPrecisionType >::GetMTime(), itk::SpatialObject< TMesh::PointDimension >::GetObjectMTime(), and itk::ProcessObject::UpdateOutputInformation().

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual const char* itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
unsigned int itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::GetNumberOfAffectedWeights ( ) const
inherited

Definition at line 311 of file itkBSplineBaseTransform.hxx.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual NumberOfParametersType itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::GetNumberOfLocalParameters ( void  ) const
inlinevirtualinherited
template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::NumberOfParametersType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::GetNumberOfParameters ( void  ) const
virtual

Return the number of parameters that completely define the Transfom

Implements itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >.

Definition at line 87 of file itkBSplineDeformableTransform.hxx.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::NumberOfParametersType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::GetNumberOfParametersPerDimension ( ) const
virtual

Return the number of parameters per dimension

Implements itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >.

Definition at line 98 of file itkBSplineDeformableTransform.hxx.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
unsigned long itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::GetNumberOfWeights ( ) const
inlineinherited
virtual const std::string& itk::Object::GetObjectName ( )
virtualinherited
unsigned int itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetOutputSpaceDimension ( void  ) const
inlinevirtualinherited

Get the size of the output space

Implements itk::TransformBaseTemplate< TScalar >.

Definition at line 108 of file itkTransform.h.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
const BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::ParametersType & itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::GetParameters ( void  ) const
virtualinherited

Get the Transformation Parameters.

Reimplemented from itk::Transform< TScalar, NDimensions, NDimensions >.

Definition at line 224 of file itkBSplineBaseTransform.hxx.

virtual int itk::LightObject::GetReferenceCount ( ) const
inlinevirtualinherited

Gets the reference count on this object.

Definition at line 112 of file itkLightObject.h.

const TimeStamp & itk::Object::GetTimeStamp ( ) const
virtualinherited

Return this object's time stamp.

Return the modification for this object.

Reimplemented in itk::RealTimeClock.

Definition at line 367 of file itkObject.cxx.

Referenced by itk::RealTimeClock::GetTimeStamp().

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual TransformCategoryType itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::GetTransformCategory ( ) const
inlinevirtualinherited

Indicates the category transform. e.g. an affine transform, or a local one, e.g. a deformation field.

Reimplemented from itk::Transform< TScalar, NDimensions, NDimensions >.

Definition at line 288 of file itkBSplineBaseTransform.h.

References itk::TransformBaseTemplate< TScalar >::BSpline.

virtual std::string itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetTransformTypeAsString ( ) const
virtualinherited

Generate a platform independent name

GenerateName

Implements itk::TransformBaseTemplate< TScalar >.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual const RegionType& itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::GetValidRegion ( )
virtual

Return the region of the grid wholly within the support region

static void itk::Object::GlobalWarningDisplayOff ( )
inlinestaticinherited

Definition at line 118 of file itkObject.h.

Referenced by itk::OutputWindow::DisplayText().

static void itk::Object::GlobalWarningDisplayOn ( )
inlinestaticinherited

Definition at line 116 of file itkObject.h.

bool itk::Object::HasObserver ( const EventObject event) const
inherited

Return true if an observer is registered for this event.

Definition at line 560 of file itkObject.cxx.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
bool itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::InsideValidRegion ( ContinuousIndexType index) const
privatevirtual

Check if a continuous index is inside the valid region.

Implements itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >.

Definition at line 467 of file itkBSplineDeformableTransform.hxx.

virtual LightObject::Pointer itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::InternalClone ( void  ) const
protectedvirtualinherited
void itk::Object::InvokeEvent ( const EventObject event)
inherited
void itk::Object::InvokeEvent ( const EventObject event) const
inherited

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

Definition at line 550 of file itkObject.cxx.

virtual bool itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::IsLinear ( ) const
inlinevirtualinherited
template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::itkCloneMacro ( Self  )

implement type-specific clone method

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::itkGetModifiableObjectMacro ( WeightsFunction  ,
WeightsFunctionType   
)
protectedinherited
void itk::Object::Modified ( void  ) const
virtualinherited

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Make sure this object's modified time is greater than all others.

Reimplemented in otb::SVMModel< TValue, TLabel >, itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexConjugatePixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, otb::SurfaceAdjacencyEffectCorrectionSchemeFilter< TInputImage, TOutputImage >, otb::SurfaceReflectanceToReflectanceFilter< TInputImage, TOutputImage >, otb::SurfaceAdjacencyEffect6SCorrectionSchemeFilter< TInputImage, TOutputImage >, otb::ReflectanceToSurfaceReflectanceImageFilter< TInputImage, TOutputImage >, otb::GenericRSTransform< TScalarType, NInputDimensions, NOutputDimensions >, itk::GPUImage< TPixel, VImageDimension >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, TBufferConverter >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, MeanShift::VectorBufferConverter >, otb::GCPsToRPCSensorModelImageFilter< TImage >, otb::Polygon< TValue >, otb::ImageRegionAdaptativeSplitter< VImageDimension >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, otb::GenericInterpolateImageFunction< TInputImage, TFunction, TBoundaryCondition, TCoordRep >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, otb::PolyLineParametricPathWithValue< TValue, VDimension >, otb::PolyLineParametricPathWithValue< TValue, 2 >, otb::PhysicalToRPCSensorModelImageFilter< TImage >, itk::NormalizeImageFilter< TInputImage, TOutputImage >, and otb::StatisticsXMLFileReader< TMeasurementVector >.

Definition at line 386 of file itkObject.cxx.

Referenced by itk::AttributeSelectionLabelMapFilter< TImage, Functor::LabelLabelObjectAccessor< TImage::LabelObjectType > >::AddAttribute(), itk::Function::ConvergenceMonitoringFunction< TScalar, TScalar >::AddEnergyValue(), otb::Wrapper::InputVectorDataListParameter::AddFromFileName(), otb::Wrapper::InputImageListParameter::AddFromFileName(), otb::Wrapper::InputFilenameListParameter::AddFromFileName(), otb::Wrapper::InputImageListParameter::AddImage(), otb::Wrapper::InputVectorDataListParameter::AddNullElement(), otb::Wrapper::InputImageListParameter::AddNullElement(), otb::Wrapper::InputFilenameListParameter::AddNullElement(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::AddSeed(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::AddSpecifiedRegion(), otb::Wrapper::InputVectorDataListParameter::AddVectorData(), itk::PolyLineParametricPath< VDimension >::AddVertex(), itk::ChainCodePath< 2 >::ChangeStep(), itk::ChainCodePath2D::ChangeStep(), itk::FourierSeriesPath< VDimension >::Clear(), itk::HilbertPath< TIndexValue, VDimension >::Clear(), itk::ChainCodePath< 2 >::Clear(), itk::ChainCodePath2D::Clear(), itk::AttributeSelectionLabelMapFilter< TImage, Functor::LabelLabelObjectAccessor< TImage::LabelObjectType > >::ClearAttributeSet(), itk::Function::ConvergenceMonitoringFunction< TScalar, TScalar >::ClearEnergyValues(), itk::MultiTransform< TScalar, NDimensions >::ClearTransformQueue(), otb::Wrapper::InputFilenameListParameter::ClearValue(), otb::Wrapper::InputImageListParameter::ClearValue(), otb::Wrapper::InputVectorDataListParameter::ClearValue(), otb::Wrapper::InputFilenameListParameter::Erase(), otb::Wrapper::InputImageListParameter::Erase(), otb::Wrapper::InputVectorDataListParameter::Erase(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::InitializeSeedList(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::InitializeSpecifiedRegionList(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::InsertNarrowBandNode(), itk::ChainCodePath2D::InsertStep(), itk::ChainCodePath< 2 >::InsertStep(), itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::MatrixOffsetTransformBase(), otb::ogr::ImageReference< double >::Modified(), itk::MultiTransform< TScalar, NDimensions >::PopBackTransform(), itk::MultiTransform< TScalar, NDimensions >::PopFrontTransform(), itk::MultiTransform< TScalar, NDimensions >::PushBackTransform(), itk::MultiTransform< TScalar, NDimensions >::PushFrontTransform(), itk::Statistics::SubsamplerBase< TSample >::RequestMaximumNumberOfResults(), itk::AdaptImageFilter< TInputImage, TOutputImage, TAccessor >::SetAccessor(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetAdvectionScaling(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetAlivePoints(), itk::CompositeTransform< TScalar, NDimensions >::SetAllTransformsToOptimize(), itk::GaussianInterpolateImageFunction< TInputImage, TCoordRep >::SetAlpha(), itk::WeightedAddImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetAlpha(), itk::SigmoidImageFilter< TInputImage, TOutputImage >::SetAlpha(), otb::AtmosphericEffects< TSpectralResponse, TRSR >::SetAtmosphericRadiativeTerms(), itk::AttributeSelectionLabelMapFilter< TImage, Functor::LabelLabelObjectAccessor< TImage::LabelObjectType > >::SetAttributeSet(), itk::LevelSetVelocityNeighborhoodExtractor< TLevelSet, TAuxValue, VAuxDimension >::SetAuxImage(), itk::SigmoidImageFilter< TInputImage, TOutputImage >::SetBeta(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetBinaryMask(), otb::TileMapImageIO::SetCacheDirectory(), itk::MatrixOffsetTransformBase< TScalar, 3, 3 >::SetCenter(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::SetClosestPoint(), itk::ConstantPadImageFilter< TInputImage, TOutputImage >::SetConstant(), itk::DivideOrZeroOutImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetConstant(), itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetCovariance(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetCurvatureScaling(), itk::CurvesLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma(), itk::NarrowBandCurvesLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma(), itk::GeodesicActiveContourLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma(), itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma(), otb::ImageIOBase::SetDimensions(), itk::ImageIOBase::SetDimensions(), otb::ImageIOBase::SetDirection(), itk::ImageIOBase::SetDirection(), itk::ExtractImageFilter< TInputImage, TOutputImage >::SetDirectionCollapseToStrategy(), itk::ComposeDisplacementFieldsImageFilter< TInputImage, TOutputImage >::SetDisplacementField(), itk::InvertDisplacementFieldImageFilter< TInputImage, TOutputImage >::SetDisplacementField(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetEdgeWeight(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetEdgeWeight(), itk::watershed::Boundary< TScalar, TDimension >::SetFace(), itk::ExpNegativeImageFilter< TInputImage, TOutputImage >::SetFactor(), itk::FileListVideoIO::SetFileName(), itk::AnisotropicDiffusionImageFilter< TInputImage, TOutputImage >::SetFixedAverageGradientMagnitude(), itk::watershed::Boundary< TScalar, TDimension >::SetFlatHash(), itk::NaryFunctorImageFilter< TInputImage, TOutputImage, Functor::Maximum1< TInputImage::PixelType, TInputImage::PixelType > >::SetFunctor(), itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, Functor::ReciprocalHAlphaFunctor< TInputImage::PixelType, TOutputImage::PixelType > >::SetFunctor(), itk::HistogramToImageFilter< THistogram, TImage, Function::HistogramIntensityFunction< SizeValueType, TImage::PixelType > >::SetFunctor(), itk::TernaryFunctorImageFilter< TInputMultiSpectralImage, TInputMultiSpectralInterpImage, TInputPanchroImage, TOutputImage, TFunctor >::SetFunctor(), itk::ConnectedComponentFunctorImageFilter< TInputImage, TOutputImage, Functor::SimilarVectorsFunctor< TInputImage::ValueType >, TMaskImage >::SetFunctor(), itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::SetFunctor(), itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, Functor::DivideOrZeroOut< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >::SetFunctor(), itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::SetFunctor(), itk::ImageMomentsCalculator< TImage >::SetImage(), otb::Wrapper::InputImageListParameter::SetImageList(), itk::VectorIndexSelectionCastImageFilter< TInputImage, TOutputImage >::SetIndex(), itk::MatrixIndexSelectionImageFilter< TInputImage, TOutputImage >::SetIndices(), itk::TriangleMeshToBinaryImageFilter< TInputMesh, TOutputImage >::SetInfoImage(), itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::SetInitialBiasFieldCoefficients(), itk::AmoebaOptimizerv4::SetInitialSimplexDelta(), itk::AmoebaOptimizer::SetInitialSimplexDelta(), itk::HistogramAlgorithmBase< THistogram >::SetInputHistogram(), otb::HistogramStatisticsFunction< TInputHistogram, TOutput >::SetInputHistogram(), otb::ImageToGenericRSOutputParameters< TImage >::SetInputKeywordList(), itk::LabelVotingImageFilter< TInputImage, TOutputImage >::SetLabelForUndecidedPixels(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::SetLabelForUndecidedPixels(), itk::watershed::Segmenter< InputImageType >::SetLargestPossibleRegion(), itk::TemporalDataObject::SetLargestPossibleTemporalRegion(), otb::Wrapper::InputImageListParameter::SetListFromFileName(), otb::Wrapper::InputVectorDataListParameter::SetListFromFileName(), otb::Wrapper::InputFilenameListParameter::SetListFromFileName(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetLowerThreshold(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetLowerThreshold(), itk::MaskNegatedImageFilter< TInputImage, TMaskImage, TOutputImage >::SetMaskingValue(), itk::MaskImageFilter< TInputImage, TMaskImage, TOutputImage >::SetMaskingValue(), itk::MatrixOffsetTransformBase< TScalar, 3, 3 >::SetMatrix(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetMaximumCurvatureTimeStep(), itk::watershed::SegmentTable< TScalar >::SetMaximumDepth(), itk::DiscreteGaussianImageFilter< TInputImage, TOutputImage >::SetMaximumError(), itk::CannyEdgeDetectionImageFilter< ImageType, ImageType >::SetMaximumError(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::SetMaximumNumberOfIterations(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetMaximumPropagationTimeStep(), itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetMean(), itk::Statistics::MembershipFunctionBase< TMeasurementVector >::SetMeasurementVectorSize(), itk::Statistics::DistanceMetric< Array< double > >::SetMeasurementVectorSize(), itk::Statistics::Sample< ImageJointDomainTraits< TImage >::MeasurementVectorType >::SetMeasurementVectorSize(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::SetNarrowBandTotalRadius(), itk::OpenCVVideoIO::SetNextFrameToRead(), itk::VXLVideoIO::SetNextFrameToRead(), otb::Wrapper::InputVectorDataListParameter::SetNthFileName(), otb::Wrapper::InputImageListParameter::SetNthFileName(), otb::Wrapper::InputFilenameListParameter::SetNthFileName(), itk::CompositeTransform< TScalar, NDimensions >::SetNthTransformToOptimize(), otb::ImageIOBase::SetNumberOfDimensions(), itk::ImageIOBase::SetNumberOfDimensions(), itk::SparseFieldFourthOrderLevelSetImageFilter< TInputImage, TOutputImage >::SetNumberOfLayers(), itk::Statistics::UniformRandomSpatialNeighborSubsampler< TSample, TRegion >::SetNumberOfResultsRequested(), itk::FastMarchingReachedTargetNodesStoppingCriterion< TInput, TOutput >::SetNumberOfTargetsToBeReached(), itk::MatrixOffsetTransformBase< TScalar, 3, 3 >::SetOffset(), itk::NeighborhoodOperatorImageFunction< TInputImage, TOutput >::SetOperator(), itk::VectorNeighborhoodOperatorImageFilter< TInputImage, TOutputImage >::SetOperator(), itk::NeighborhoodOperatorImageFilter< TInputImage, TOutputImage, TOperatorValueType >::SetOperator(), otb::ImageIOBase::SetOrigin(), itk::ImageIOBase::SetOrigin(), itk::SigmoidImageFilter< TInputImage, TOutputImage >::SetOutputMaximum(), itk::SigmoidImageFilter< TInputImage, TOutputImage >::SetOutputMinimum(), otb::ImageToGenericRSOutputParameters< TImage >::SetOutputProjectionRef(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetOutsidePoints(), itk::MaskNegatedImageFilter< TInputImage, TMaskImage, TOutputImage >::SetOutsideValue(), itk::MaskImageFilter< TInputImage, TMaskImage, TOutputImage >::SetOutsideValue(), otb::MapProjectionAdapter::SetParameter(), itk::Statistics::ProbabilityDistribution::SetParameters(), itk::DisplacementFieldTransform< TScalar, NDimensions >::SetParameters(), itk::FFTWHalfHermitianToRealInverseFFTImageFilter< TInputImage, TOutputImage >::SetPlanRigor(), itk::FFTWInverseFFTImageFilter< TInputImage, TOutputImage >::SetPlanRigor(), itk::FFTWRealToHalfHermitianForwardFFTImageFilter< TInputImage, TOutputImage >::SetPlanRigor(), itk::FFTWForwardFFTImageFilter< TInputImage, TOutputImage >::SetPlanRigor(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::SetPriorProbabilities(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetPropagationScaling(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::ChangeInformationImageFilter< TInputImage >::SetReferenceImage(), itk::ImportImageFilter< TPixel, VImageDimension >::SetRegion(), itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::SetRegionOfInterest(), itk::ScaleTransform< TScalar, NDimensions >::SetScale(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints1(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints2(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSegmentationFunction(), itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetShapePriorScaling(), itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetShrinkFactorsPerDimension(), itk::GaussianInterpolateImageFunction< TInputImage, TCoordRep >::SetSigma(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingConductance(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingConductance(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingIterations(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingIterations(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingTimeStep(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingTimeStep(), itk::PowellOptimizerv4< TInternalComputationValueType >::SetSpaceDimension(), itk::PowellOptimizer::SetSpaceDimension(), otb::ImageIOBase::SetSpacing(), itk::ImageIOBase::SetSpacing(), itk::SpatialObject< TMesh::PointDimension >::SetSpacing(), itk::ImageMomentsCalculator< TImage >::SetSpatialObjectMask(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetSpeedConstant(), itk::FastMarchingReachedTargetNodesStoppingCriterion< TInput, TOutput >::SetTargetCondition(), itk::FastMarchingReachedTargetNodesStoppingCriterion< TInput, TOutput >::SetTargetNodes(), itk::FastMarchingUpwindGradientImageFilter< TLevelSet, TSpeedImage >::SetTargetPoints(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::SetTerminationUpdateThreshold(), itk::DivideOrZeroOutImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetThreshold(), itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetThreshold(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::MatrixOffsetTransformBase< TScalar, 3, 3 >::SetTranslation(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetTrialPoints(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUpperThreshold(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUpperThreshold(), itk::Statistics::UniformRandomSpatialNeighborSubsampler< TSample, TRegion >::SetUseClockForSeed(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUseMinimalCurvature(), itk::watershed::Boundary< TScalar, TDimension >::SetValid(), otb::Wrapper::ListViewParameter::SetValue(), otb::Wrapper::ChoiceParameter::SetValue(), itk::DiscreteGaussianImageFilter< TInputImage, TOutputImage >::SetVariance(), itk::CannyEdgeDetectionImageFilter< ImageType, ImageType >::SetVariance(), otb::Wrapper::InputVectorDataListParameter::SetVectorDataList(), otb::MapProjectionAdapter::SetWkt(), itk::LabelVotingImageFilter< TInputImage, TOutputImage >::UnsetLabelForUndecidedPixels(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::UnsetLabelForUndecidedPixels(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::UnsetMaximumNumberOfIterations(), and itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::UnsetPriorProbabilities().

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
static Pointer itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::New ( )
static

New macro for creation of through the object factory.

Referenced by itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::CreateAnother().

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::operator= ( const Self )
private
OutputDiffusionTensor3DType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::PreservationOfPrincipalDirectionDiffusionTensor3DReorientation ( const InputDiffusionTensor3DType  ,
const JacobianType   
) const
protectedinherited

Transform tensor

void itk::LightObject::Print ( std::ostream &  os,
Indent  indent = 0 
) const
inherited

Cause the object to print itself out.

Avoid DLL boundary problems. This function will be common to all itk objects. It just calls the header/self/trailer virtual print methods, which can be overriden by subclasses (any itk object).

Definition at line 137 of file itkLightObject.cxx.

References itk::Indent::GetNextIndent().

Referenced by itk::operator<<(), and itk::VideoStream< TFrameType >::PrintSelf().

void itk::LightObject::PrintHeader ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Define a default print header for all objects.

Definition at line 315 of file itkLightObject.cxx.

bool itk::Object::PrintObservers ( std::ostream &  os,
Indent  indent 
) const
protectedinherited

Definition at line 571 of file itkObject.cxx.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual
void itk::LightObject::PrintTrailer ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Define a default print trailer for all objects.

Definition at line 325 of file itkLightObject.cxx.

void itk::Object::Register ( ) const
virtualinherited

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

Definition at line 397 of file itkObject.cxx.

Referenced by itk::ObjectFactoryBase::RegisterFactory(), and itk::ObjectFactoryBase::RegisterFactoryInternal().

void itk::Object::RemoveAllObservers ( )
inherited

Remove all observers .

Definition at line 530 of file itkObject.cxx.

void itk::Object::RemoveObserver ( unsigned long  tag)
inherited

Remove the observer with this tag value.

Definition at line 520 of file itkObject.cxx.

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), and otb::ImageFileWriter< TInputImage >::Update().

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::SetBulkTransform ( const BulkTransformType _arg)
virtual

This method specifies the bulk transform to be applied. The default is the identity transform.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::SetCoefficientImageInformationFromFixedParameters ( )
privatevirtual

Construct control point grid size from transform domain information

Implements itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >.

Definition at line 228 of file itkBSplineDeformableTransform.hxx.

References itk::ImageRegion< VImageDimension >::SetSize().

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::SetCoefficientImages ( const CoefficientImageArray images)
virtual

Set the array of coefficient images.

This is an alternative API for setting the BSpline coefficients as an array of SpaceDimension images. The fixed parameters are taken from the first image. It is assumed that the buffered region of all the subsequent images are the same as the first image. Note that no error checking is done.

Warning: use either the SetParameters() or SetCoefficientImages() API. Mixing the two modes may results in unexpected results.

Implements itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >.

Definition at line 386 of file itkBSplineDeformableTransform.hxx.

void itk::Object::SetDebug ( bool  debugFlag) const
inherited

Set the value of the debug flag. A non-zero value turns debugging on.

Definition at line 347 of file itkObject.cxx.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::SetFixedParameters ( const ParametersType parameters)
virtual

This method sets the fixed parameters of the transform. For a BSpline deformation transform, the parameters are the following: Grid Size, Grid Origin, and Grid Spacing

The fixed parameters are the three times the size of the templated dimensions. This function has the effect of make the following calls: transform->SetGridSpacing( spacing ); transform->SetGridOrigin( origin ); transform->SetGridDirection( direction ); transform->SetGridRegion( bsplineRegion );

This function was added to allow the transform to work with the itkTransformReader/Writer I/O filters.

Implements itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >.

Definition at line 349 of file itkBSplineDeformableTransform.hxx.

virtual void itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::SetFixedParameters ( const ParametersType )
pure virtualinherited
template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::SetFixedParametersFromTransformDomainInformation ( ) const
protectedinherited

Construct control point grid from transform domain information

Definition at line 125 of file itkBSplineBaseTransform.hxx.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::SetFixedParametersGridDirectionFromTransformDomainInformation ( ) const
privatevirtual

Construct control point grid direction from transform domain information

Set the direction parameters

Implements itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >.

Definition at line 330 of file itkBSplineDeformableTransform.hxx.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::SetFixedParametersGridOriginFromTransformDomainInformation ( ) const
privatevirtual

Construct control point grid origin from transform domain information

Implements itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >.

Definition at line 300 of file itkBSplineDeformableTransform.hxx.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::SetFixedParametersGridSizeFromTransformDomainInformation ( ) const
privatevirtual

Construct control point grid size from transform domain information

Implements itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >.

Definition at line 286 of file itkBSplineDeformableTransform.hxx.

References itk::Size< VDimension >::GetSize().

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::SetFixedParametersGridSpacingFromTransformDomainInformation ( ) const
privatevirtual

Construct control point grid spacing from transform domain information

Implements itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >.

Definition at line 316 of file itkBSplineDeformableTransform.hxx.

void itk::Object::SetGlobalWarningDisplay ( bool  val)
staticinherited

This is a global flag that controls whether any debug, warning or error messages are displayed.

Set the value of the global debug output control flag.

Definition at line 469 of file itkObject.cxx.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::SetGridDirection ( const DirectionType direction)
virtual

Function to specify the transform domain direction.

Definition at line 191 of file itkBSplineDeformableTransform.hxx.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::SetGridOrigin ( const OriginType origin)
virtual

Function to specify the transform domain origin.

Definition at line 210 of file itkBSplineDeformableTransform.hxx.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::SetGridRegion ( const RegionType region)
virtual

Function to specify the transform domain mesh size.

Definition at line 139 of file itkBSplineDeformableTransform.hxx.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::SetGridSpacing ( const SpacingType spacing)
virtual

This method specifies the grid spacing or resolution.

Definition at line 172 of file itkBSplineDeformableTransform.hxx.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::SetIdentity ( void  )
inherited

This method can ONLY be invoked AFTER calling SetParameters(). This restriction is due to the fact that the BSplineBaseTransform does not copy the array of parameters internally, instead it keeps a pointer to the user-provided array of parameters. This method is also in violation of the const-correctness of the parameters since the parameter array has been passed to the transform on a 'const' basis but the values get modified when the user invokes SetIdentity().

Definition at line 55 of file itkBSplineBaseTransform.hxx.

Referenced by itk::BSplineTransform< TScalar, NDimensions, VSplineOrder >::BSplineTransform().

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary rhs)
inherited
virtual void itk::Object::SetObjectName ( std::string  _arg)
virtualinherited

A facility to help application programmers set a human identifiable name for a given object. This has no inherent use in ITK, but is a convenience to allow developers to provide a name for this object.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::SetParameters ( const ParametersType parameters)
inherited

This method sets the parameters of the transform. For a BSpline deformation transform, the parameters are the BSpline coefficients on a sparse grid.

The parameters are N number of N-D grid of coefficients. Each N-D grid is represented as a flat array of scalars (in the same configuration as an itk::Image). The N arrays are then concatenated to form one parameter array.

For efficiency, this transform does not make a copy of the parameters. It only keeps a pointer to the input parameters. It assumes that the memory is managed by the caller. Use SetParametersByValue to force the transform to call copy the parameters.

This method wraps each grid as itk::Image's using the user specified fixed parameters. NOTE: The transform domain must be set first.

Definition at line 71 of file itkBSplineBaseTransform.hxx.

virtual void itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::SetParameters ( const ParametersType )
pure virtualinherited

Set the transformation parameters and update internal transformation. SetParameters gives the transform the option to set it's parameters by keeping a reference to the parameters, or by copying. To force the transform to copy it's parameters call SetParametersByValue.

See Also
SetParametersByValue

Implements itk::TransformBaseTemplate< TScalar >.

Implemented in itk::DisplacementFieldTransform< TScalar, NDimensions >, itk::MultiTransform< TScalar, NDimensions >, and itk::TranslationTransform< TScalar, NDimensions >.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::SetParametersByValue ( const ParametersType parameters)
inherited

This method sets the parameters of the transform. For a BSpline deformation transform, the parameters are the BSpline coefficients on a sparse grid.

The parameters are N number of N-D grid of coefficients. Each N-D grid is represented as a flat array of doubles (in the same configuration as an itk::Image). The N arrays are then concatenated to form one parameter array.

This methods makes a copy of the parameters while for efficiency the SetParameters method does not.

This method wraps each grid as itk::Image's using the user specified fixed parameters. NOTE: The fixed parameters must be set first.

Definition at line 105 of file itkBSplineBaseTransform.hxx.

virtual void itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::SetParametersByValue ( const ParametersType p)
inlinevirtualinherited

Set the transformation parameters and update internal transformation. This method forces the transform to copy the parameters. The default implementation is to call SetParameters. This call must be overridden if the transform normally implements SetParameters by keeping a reference to the parameters.

See Also
SetParameters

Implements itk::TransformBaseTemplate< TScalar >.

Definition at line 354 of file itkTransform.h.

References itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::SetParameters().

void itk::Object::SetReferenceCount ( int  ref)
virtualinherited

Sets the reference count (use with care)

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 440 of file itkObject.cxx.

void itk::Object::SetTimeStamp ( const TimeStamp timeStamp)
protectedvirtualinherited

Set the time stamp of this object. This method must be used very carefully !!!. Most mortals will never need to call this method.

Set the time stamp of this object. To be used very carefully !!!. Most mortals will never need to call this method.

Definition at line 376 of file itkObject.cxx.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual void itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::SetWeightsFunction ( WeightsFunctionType _arg)
protectedvirtualinherited

Get/Set to allow subclasses to access and manipulate the weights function.

virtual OutputCovariantVectorType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformCovariantVector ( const InputCovariantVectorType ) const
inlinevirtualinherited

Method to transform a CovariantVector.

Definition at line 237 of file itkTransform.h.

References itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetNameOfClass().

virtual OutputCovariantVectorType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformCovariantVector ( const InputCovariantVectorType vector,
const InputPointType point 
) const
virtualinherited

Method to transform a CovariantVector, using a point. Global transforms can ignore the point parameter. Local transforms (e.g. deformation field transform) must override and provide required behavior. By default, point is ignored and TransformCovariantVector(vector) is called

Transform covariant vector

virtual OutputVectorPixelType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformCovariantVector ( const InputVectorPixelType ) const
inlinevirtualinherited

Method to transform a CovariantVector stored in a VectorImage.

Definition at line 253 of file itkTransform.h.

References itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetNameOfClass().

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual OutputCovariantVectorType itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::TransformCovariantVector ( const InputCovariantVectorType ) const
inlinevirtualinherited

Definition at line 264 of file itkBSplineBaseTransform.h.

virtual OutputVectorPixelType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformCovariantVector ( const InputVectorPixelType vector,
const InputPointType point 
) const
virtualinherited

Method to transform a CovariantVector, using a point. Global transforms can ignore the point parameter. Local transforms (e.g. deformation field transform) must override and provide required behavior. By default, point is ignored and TransformCovariantVector(vector) is called

Transform covariant vector

virtual OutputDiffusionTensor3DType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformDiffusionTensor3D ( const InputDiffusionTensor3DType ) const
inlinevirtualinherited

Method to transform a diffusion tensor

Definition at line 270 of file itkTransform.h.

References itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetNameOfClass().

virtual OutputDiffusionTensor3DType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformDiffusionTensor3D ( const InputDiffusionTensor3DType tensor,
const InputPointType point 
) const
virtualinherited

Method to transform a diffusion tensor at a point. Global transforms can ignore the point parameter. Local transforms (e.g. deformation field transform) must override and provide required behavior. By default, point is ignored and TransformDiffusionTensor(tensor) is called

Transform tensor

virtual OutputVectorPixelType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformDiffusionTensor3D ( const InputVectorPixelType ) const
inlinevirtualinherited

Method to transform a diffusion tensor stored in a VectorImage

Definition at line 289 of file itkTransform.h.

References itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetNameOfClass().

virtual OutputVectorPixelType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformDiffusionTensor3D ( const InputVectorPixelType tensor,
const InputPointType point 
) const
virtualinherited

Transform tensor

virtual OutputPointType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformPoint ( const InputPointType ) const
pure virtualinherited

Method to transform a point.

Warning
This method must be thread-safe. See, e.g., its use in ResampleImageFilter.
template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::OutputPointType itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::TransformPoint ( const InputPointType point) const
inherited

Transform points by a BSpline deformable transformation.

Definition at line 337 of file itkBSplineBaseTransform.hxx.

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::TransformPoint ( const InputPointType inputPoint,
OutputPointType outputPoint,
WeightsType weights,
ParameterIndexArrayType indices,
bool &  inside 
) const
virtual

Transform points by a BSpline deformable transformation. On return, weights contains the interpolation weights used to compute the deformation and indices of the x (zeroth) dimension coefficient parameters in the support region used to compute the deformation. Parameter indices for the i-th dimension can be obtained by adding ( i * this->GetNumberOfParametersPerDimension() ) to the indices array.

Implements itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >.

Definition at line 494 of file itkBSplineDeformableTransform.hxx.

References itk::FixedArray< TValue, VLength >::Fill(), itk::ImageRegion< VImageDimension >::SetIndex(), and itk::ImageRegion< VImageDimension >::SetSize().

virtual OutputSymmetricSecondRankTensorType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformSymmetricSecondRankTensor ( const InputSymmetricSecondRankTensorType tensor,
const InputPointType point 
) const
virtualinherited

Method to transform a diffusion tensor at a point. Global transforms can ignore the point parameter. Local transforms (e.g. deformation field transform) must override and provide required behavior. By default, point is ignored and TransformSymmetricSecondRankTensor(tensor) is called

Transform tensor

virtual OutputSymmetricSecondRankTensorType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformSymmetricSecondRankTensor ( const InputSymmetricSecondRankTensorType ) const
inlinevirtualinherited

Method to transform a ssr tensor stored in a VectorImage

Definition at line 311 of file itkTransform.h.

References itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetNameOfClass().

virtual OutputVectorPixelType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformSymmetricSecondRankTensor ( const InputVectorPixelType ) const
inlinevirtualinherited

Method to transform a ssr tensor stored in a VectorImage

Definition at line 320 of file itkTransform.h.

References itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetNameOfClass().

virtual OutputVectorPixelType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformSymmetricSecondRankTensor ( const InputVectorPixelType tensor,
const InputPointType point 
) const
virtualinherited

Method to transform a diffusion tensor stored in a VectorImage, at a point. Global transforms can ignore the point parameter. Local transforms (e.g. deformation field transform) must override and provide required behavior. By default, point is ignored and TransformDiffusionTensor(tensor) is called

Transform tensor

virtual OutputVectorType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVectorType ) const
inlinevirtualinherited

Method to transform a vector.

Definition at line 191 of file itkTransform.h.

References itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetNameOfClass().

virtual OutputVectorType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVectorType vector,
const InputPointType point 
) const
virtualinherited

Method to transform a vector at a given location. For global transforms, point is ignored and TransformVector( vector ) is called. Local transforms (e.g. deformation field transform) must override and provide required behavior.

Transform vector

virtual OutputVnlVectorType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVnlVectorType ) const
inlinevirtualinherited

Method to transform a vnl_vector.

Definition at line 206 of file itkTransform.h.

References itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetNameOfClass().

virtual OutputVnlVectorType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVnlVectorType vector,
const InputPointType point 
) const
virtualinherited

Method to transform a vnl_vector, at a point. For global transforms, point is ignored and TransformVector( vector ) is called. Local transforms (e.g. deformation field transform) must override and provide required behavior.

Transform vector

virtual OutputVectorPixelType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVectorPixelType ) const
inlinevirtualinherited

Method to transform a vector stored in a VectorImage.

Definition at line 221 of file itkTransform.h.

References itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetNameOfClass().

virtual OutputVectorPixelType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVectorPixelType vector,
const InputPointType point 
) const
virtualinherited

Method to transform a vector stored in a VectorImage, at a point. For global transforms, point is ignored and TransformVector( vector ) is called. Local transforms (e.g. deformation field transform) must override and provide required behavior.

Transform vector

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual OutputVectorType itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::TransformVector ( const InputVectorType ) const
inlinevirtualinherited

Definition at line 249 of file itkBSplineBaseTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual OutputVnlVectorType itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::TransformVector ( const InputVnlVectorType ) const
inlinevirtualinherited

Method to transform a vnl_vector - not applicable for this type of transform

Definition at line 256 of file itkBSplineBaseTransform.h.

void itk::Object::UnRegister ( ) const
virtualinherited

Decrease the reference count (release by another object).

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 411 of file itkObject.cxx.

Referenced by itk::ObjectFactoryBase::DeleteNonInternalFactory(), and itk::Object::New().

template<typename TScalar, unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::UpdateTransformParameters ( const DerivativeType update,
TScalar  factor = 1.0 
)
virtualinherited

Update the transform's parameters by the adding values in update to current parameter values. We assume update is of the same length as Parameters. Throw exception otherwise. factor is a scalar multiplier for each value in update. SetParameters is called at the end of this method, to allow transforms to perform any required operations on the update parameters, typically a converion to member variables for use in TransformPoint. Derived classes should override to provide specialized behavior.

UpdateTransformParameters

Definition at line 150 of file itkBSplineBaseTransform.hxx.

virtual void itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::UpdateTransformParameters ( const DerivativeType update,
TScalar  factor = 1.0 
)
virtualinherited

Update the transform's parameters by the values in update.

Parameters
updatemust be of the same length as returned by GetNumberOfParameters(). Throw an exception otherwise.
factoris a scalar multiplier for each value in update. SetParameters is called at the end of this method, to allow the transform to perform any required operations on the updated parameters - typically a conversion to member variables for use in TransformPoint.

UpdateTransformParameters

template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::UpdateValidGridRegion ( )
private
template<typename TScalar , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::WrapAsImages ( )
protectedinherited

Wrap flat array into images of coefficients.

Wrap flat parameters array into SpaceDimension number of ITK images NOTE: For efficiency, parameters are not copied locally. The parameters are assumed to be maintained by the caller.

Definition at line 203 of file itkBSplineBaseTransform.hxx.

Member Data Documentation

const unsigned int itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::InputSpaceDimension
staticinherited

Dimension of the domain space.

Definition at line 95 of file itkTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
BulkTransformPointer itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::m_BulkTransform
private

The bulk transform.

Definition at line 354 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
CoefficientImageArray itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::m_CoefficientImages
protectedinherited

Array of images representing the B-spline coefficients in each dimension wrapped from the flat parameters in m_InternalParametersBuffer

Definition at line 356 of file itkBSplineBaseTransform.h.

Referenced by itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::GetCoefficientImages().

DirectionChangeMatrix itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::m_DirectionChange
mutableprotectedinherited

Definition at line 554 of file itkTransform.h.

ParametersType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::m_FixedParameters
mutableprotectedinherited
template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
const DirectionType& itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::m_GridDirection
private

Definition at line 351 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
const OriginType& itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::m_GridOrigin
private

Definition at line 349 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
const RegionType& itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::m_GridRegion
private

The variables defining the coefficient grid domain for the InternalParametersBuffer are taken from the m_CoefficientImages[0] image, and must be kept in sync with them. by using references to that instance, this is more naturally enforced and does not introduce a speed penalty of dereferencing through the pointers (although it does enforce some internal class synchronization).

Definition at line 348 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
const SpacingType& itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::m_GridSpacing
private

Definition at line 350 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
ParametersType itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::m_InternalParametersBuffer
protectedinherited

Internal parameters buffer.

Definition at line 359 of file itkBSplineBaseTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
unsigned long itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::m_Offset
private

Variables defining the interpolation support region.

Definition at line 359 of file itkBSplineDeformableTransform.h.

ParametersType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::m_Parameters
mutableprotectedinherited
InternalReferenceCountType itk::LightObject::m_ReferenceCount
mutableprotectedinherited

Number of uses of this object by other objects.

Definition at line 156 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock
mutableprotectedinherited

Mutex lock to protect modification to the reference count

Definition at line 159 of file itkLightObject.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
bool itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::m_SplineOrderOdd
private

Definition at line 360 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
RegionType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::m_ValidRegion
private

Definition at line 356 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
IndexType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::m_ValidRegionFirst
private

Definition at line 362 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
IndexType itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::m_ValidRegionLast
private

Definition at line 361 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
WeightsFunctionType::Pointer itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::m_WeightsFunction
protectedinherited

Pointer to function used to compute Bspline interpolation weights.

Definition at line 362 of file itkBSplineBaseTransform.h.

Referenced by itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >::GetNumberOfWeights().

const unsigned int itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::OutputSpaceDimension
staticinherited

Definition at line 96 of file itkTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
const unsigned int itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::SpaceDimension = NDimensions
static

Dimension of the domain space.

Definition at line 148 of file itkBSplineDeformableTransform.h.

template<typename TScalar = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
const unsigned int itk::BSplineDeformableTransform< TScalar, NDimensions, VSplineOrder >::SplineOrder = VSplineOrder
static

The BSpline order.

Definition at line 151 of file itkBSplineDeformableTransform.h.


The documentation for this class was generated from the following files:

Generated at Sat Aug 30 2014 16:52:43 for Orfeo Toolbox with doxygen 1.8.3.1