Orfeo Toolbox  3.16
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Types | Protected Member Functions | Protected Attributes | Private Types | Private Member Functions | Private Attributes
itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder > Class Template Reference
Transforms

Deformable transform using a BSpline representation. More...

#include <itkBSplineDeformableTransform.h>

+ Inheritance diagram for itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >:
+ Collaboration diagram for itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >:

List of all members.

Public Types

typedef
BulkTransformType::ConstPointer 		BulkTransformPointer
typedef Transform< ScalarType,
itkGetStaticConstMacro(SpaceDimension),
itkGetStaticConstMacro(SpaceDimension)> 		BulkTransformType
typedef SmartPointer< const Self > ConstPointer
typedef
WeightsFunctionType::ContinuousIndexType 		ContinuousIndexType
typedef double CoordRepType
typedef ImageType::DirectionType DirectionType
typedef ImageType::Pointer ImagePointer
typedef Image< PixelType,
itkGetStaticConstMacro(SpaceDimension)> 		ImageType
typedef RegionType::IndexType IndexType
typedef CovariantVector
< TScalarType,
itkGetStaticConstMacro(SpaceDimension)> 		InputCovariantVectorType
typedef Point< TScalarType,
itkGetStaticConstMacro(SpaceDimension)> 		InputPointType
typedef Vector< TScalarType,
itkGetStaticConstMacro(SpaceDimension)> 		InputVectorType
typedef vnl_vector_fixed
< TScalarType,
itkGetStaticConstMacro(SpaceDimension)> 		InputVnlVectorType
typedef
InverseTransformBaseType::Pointer 		InverseTransformBasePointer
typedef TransformBase InverseTransformBaseType
typedef Superclass::JacobianType JacobianType
typedef ImageType::PointType OriginType
typedef CovariantVector
< TScalarType,
itkGetStaticConstMacro(SpaceDimension)> 		OutputCovariantVectorType
typedef Point< TScalarType,
itkGetStaticConstMacro(SpaceDimension)> 		OutputPointType
typedef Vector< TScalarType,
itkGetStaticConstMacro(SpaceDimension)> 		OutputVectorType
typedef vnl_vector_fixed
< TScalarType,
itkGetStaticConstMacro(SpaceDimension)> 		OutputVnlVectorType
typedef Array< unsigned long > ParameterIndexArrayType
typedef Superclass::ParametersType ParametersType
typedef
Superclass::ParametersValueType 		ParametersValueType
typedef ParametersType::ValueType PixelType
typedef SmartPointer< Self > Pointer
typedef ImageRegion
< itkGetStaticConstMacro(SpaceDimension)> 		RegionType
typedef Superclass::ScalarType ScalarType
typedef BSplineDeformableTransform Self
typedef RegionType::SizeType SizeType
typedef ImageType::SpacingType SpacingType
typedef Transform< TScalarType,
NDimensions, NDimensions > 		Superclass
typedef
BSplineInterpolationWeightFunction
< ScalarType,
itkGetStaticConstMacro(SpaceDimension),
itkGetStaticConstMacro(SplineOrder)> 		WeightsFunctionType
typedef
WeightsFunctionType::WeightsType 		WeightsType

Public Member Functions

unsigned long AddObserver (const EventObject &event, Command *)
unsigned long AddObserver (const EventObject &event, Command *) const
virtual ::itk::LightObject::Pointer CreateAnother (void) const
virtual void DebugOff () const
virtual void DebugOn () const
virtual void Delete ()
virtual const BulkTransformType * GetBulkTransform ()
virtual ImagePointer * GetCoefficientImage ()
virtual const ImagePointer * GetCoefficientImage () const
Command * GetCommand (unsigned long tag)
bool GetDebug () const
virtual const ParametersType & GetFixedParameters (void) const
virtual DirectionType GetGridDirection () const
virtual OriginType GetGridOrigin () const
virtual RegionType GetGridRegion () const
virtual SpacingType GetGridSpacing () const
unsigned int GetInputSpaceDimension (void) const
bool GetInverse (Self *) const
virtual InverseTransformBasePointer GetInverseTransform () const
virtual const JacobianType & GetJacobian (const InputPointType &) const
virtual void GetJacobian (const InputPointType &inputPoint, WeightsType &weights, ParameterIndexArrayType &indices) const
virtual const JacobianType & GetJacobian (const InputPointType &point) const
MetaDataDictionary & GetMetaDataDictionary (void)
const MetaDataDictionary & GetMetaDataDictionary (void) const
virtual unsigned long GetMTime () const
virtual const char * GetNameOfClass () const
unsigned int GetNumberOfAffectedWeights () const
virtual unsigned int GetNumberOfParameters (void) const
unsigned int GetNumberOfParametersPerDimension (void) const
unsigned long GetNumberOfWeights () const
unsigned int GetOutputSpaceDimension (void) const
virtual const ParametersType & GetParameters (void) const
virtual int GetReferenceCount () const
virtual std::string GetTransformTypeAsString () const
virtual const RegionType & GetValidRegion ()
bool HasObserver (const EventObject &event) const
void InvokeEvent (const EventObject &)
void InvokeEvent (const EventObject &) const
virtual bool IsLinear () const
virtual void Modified () const
void Print (std::ostream &os, Indent indent=0) const
virtual void Register () const
void RemoveAllObservers ()
void RemoveObserver (unsigned long tag)
virtual void SetBulkTransform (const BulkTransformType *_arg)
virtual void SetCoefficientImage (ImagePointer images[])
void SetDebug (bool debugFlag) const
virtual void SetFixedParameters (const ParametersType &)
void SetFixedParameters (const ParametersType &parameters)
virtual void SetGridDirection (const DirectionType &spacing)
virtual void SetGridOrigin (const OriginType &origin)
virtual void SetGridRegion (const RegionType &region)
virtual void SetGridSpacing (const SpacingType &spacing)
void SetIdentity ()
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void SetParameters (const ParametersType &)
void SetParameters (const ParametersType &parameters)
virtual void SetParametersByValue (const ParametersType &p)
void SetParametersByValue (const ParametersType &parameters)
virtual void SetReferenceCount (int)
virtual OutputCovariantVectorType TransformCovariantVector (const InputCovariantVectorType &) const
virtual OutputPointType TransformPoint (const InputPointType &) const
OutputPointType TransformPoint (const InputPointType &point) const
virtual void TransformPoint (const InputPointType &inputPoint, OutputPointType &outputPoint, WeightsType &weights, ParameterIndexArrayType &indices, bool &inside) const
virtual OutputVectorType TransformVector (const InputVectorType &) const
virtual OutputVnlVectorType TransformVector (const InputVnlVectorType &) const
virtual OutputVectorType TransformVector (const InputVectorType &) const
virtual OutputVnlVectorType TransformVector (const InputVnlVectorType &) const
virtual void UnRegister () const

Static Public Member Functions

static void BreakOnError ()
static bool GetGlobalWarningDisplay ()
static void GlobalWarningDisplayOff ()
static void GlobalWarningDisplayOn ()
static Pointer New (void)
static void SetGlobalWarningDisplay (bool flag)

Static Public Attributes

static const unsigned int InputSpaceDimension
static const unsigned int OutputSpaceDimension
static const unsigned int SpaceDimension = NDimensions
static const unsigned int SplineOrder = VSplineOrder

Protected Types

typedef int InternalReferenceCountType

Protected Member Functions

 BSplineDeformableTransform ()
virtual ~BSplineDeformableTransform ()
virtual WeightsFunctionType * GetWeightsFunction ()
virtual void PrintHeader (std::ostream &os, Indent indent) const
bool PrintObservers (std::ostream &os, Indent indent) const
void PrintSelf (std::ostream &os, Indent indent) const
virtual void PrintTrailer (std::ostream &os, Indent indent) const
virtual void SetWeightsFunction (WeightsFunctionType *_arg)
void TransformPointToContinuousIndex (const InputPointType &point, ContinuousIndexType &index) const
void WrapAsImages ()

Protected Attributes

ParametersType m_FixedParameters
JacobianType m_Jacobian
ParametersType m_Parameters
InternalReferenceCountType m_ReferenceCount
SimpleFastMutexLock m_ReferenceCountLock

Private Types

typedef Image
< JacobianPixelType,
itkGetStaticConstMacro(SpaceDimension)> 		JacobianImageType
typedef JacobianType::ValueType JacobianPixelType

Private Member Functions

 BSplineDeformableTransform (const Self &)
bool InsideValidRegion (const ContinuousIndexType &index) const
void operator= (const Self &)

Private Attributes

BulkTransformPointer m_BulkTransform
ImagePointer m_CoefficientImage [NDimensions]
DirectionType m_GridDirection
OriginType m_GridOrigin
RegionType m_GridRegion
SpacingType m_GridSpacing
DirectionType m_IndexToPoint
const ParametersType * m_InputParametersPointer
ParametersType m_InternalParametersBuffer
JacobianImageType::Pointer m_JacobianImage [NDimensions]
IndexType m_LastJacobianIndex
unsigned long m_Offset
DirectionType m_PointToIndex
bool m_SplineOrderOdd
SizeType m_SupportSize
RegionType m_ValidRegion
IndexType m_ValidRegionFirst
IndexType m_ValidRegionLast
WeightsFunctionType::Pointer m_WeightsFunction
ImagePointer m_WrappedImage [NDimensions]

Detailed Description

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
class itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >

Deformable transform using a BSpline representation.

This class encapsulates a deformable transform of points from one N-dimensional one space to another N-dimensional space. The deformation field is modeled using B-splines. A deformation is defined on a sparse regular grid of control points $ \vec{\lambda}_j $ and is varied by defining a deformation $ \vec{g}(\vec{\lambda}_j) $ of each control point. The deformation $ D(\vec{x}) $ at any point $ \vec{x} $ is obtained by using a B-spline interpolation kernel.

The deformation field grid is defined by a user specified GridRegion, GridSpacing and GridOrigin. Each grid/control point has associated with it N deformation coefficients $ \vec{\delta}_j $, representing the N directional components of the deformation. Deformation outside the grid plus support region for the BSpline interpolation is assumed to be zero.

Additionally, the user can specified an addition bulk transform $ B $ such that the transformed point is given by:

\[ \vec{y} = B(\vec{x}) + D(\vec{x}) \]

The parameters for this transform is N x N-D grid of spline coefficients. The user specifies the parameters as one flat array: each N-D grid is represented by an array in the same way an N-D image is represented in the buffer; the N arrays are then concatentated together on form a single array.

For efficiency, this transform does not make a copy of the parameters. It only keeps a pointer to the input parameters and assumes that the memory is managed by the caller.

The following illustrates the typical usage of this class: 

 * typedef BSplineDeformableTransform<double,2,3> TransformType;
 * TransformType::Pointer transform = TransformType::New();
 *
 * transform->SetGridRegion( region );
 * transform->SetGridSpacing( spacing );
 * transform->SetGridOrigin( origin );
 *
 * // NB: the region must be set first before setting the parameters
 *
 * TransformType::ParametersType parameters( 
 *                                       transform->GetNumberOfParameters() );
 *
 * // Fill the parameters with values
 *
 * transform->SetParameters( parameters )
 *
 * outputPoint = transform->TransformPoint( inputPoint );
 *
 *

An alternative way to set the B-spline coefficients is via array of images. The grid region, spacing and origin information is taken directly from the first image. It is assumed that the subsequent images are the same buffered region. The following illustrates the API: 

 *
 * TransformType::ImageConstPointer images[2];
 *
 * // Fill the images up with values
 *
 * transform->SetCoefficientImages( images ); 
 * outputPoint = transform->TransformPoint( inputPoint );
 *
 *

Warning: use either the SetParameters() or SetCoefficientImage() API. Mixing the two modes may results in unexpected results.

The class is templated coordinate representation type (float or double), the space dimension and the spline order.

Definition at line 111 of file itkBSplineDeformableTransform.h.

Member Typedef Documentation

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef BulkTransformType::ConstPointer itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::BulkTransformPointer

Definition at line 297 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Transform<ScalarType,itkGetStaticConstMacro(SpaceDimension), itkGetStaticConstMacro(SpaceDimension)> itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::BulkTransformType

Typedef of the bulk transform.

Definition at line 292 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef SmartPointer<const Self> itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::ConstPointer

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 119 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef WeightsFunctionType::ContinuousIndexType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::ContinuousIndexType

Definition at line 314 of file itkBSplineDeformableTransform.h.

typedef double itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::CoordRepType
inherited

Definition at line 94 of file itkTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef ImageType::DirectionType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::DirectionType

Definition at line 275 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef ImageType::Pointer itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::ImagePointer

Definition at line 247 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Image<PixelType,itkGetStaticConstMacro(SpaceDimension)> itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::ImageType

Definition at line 246 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef RegionType::IndexType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::IndexType

Definition at line 272 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef CovariantVector<TScalarType, itkGetStaticConstMacro(SpaceDimension)> itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::InputCovariantVectorType

Standard covariant vector type for this class.

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 154 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Point<TScalarType, itkGetStaticConstMacro(SpaceDimension)> itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::InputPointType

Standard coordinate point type for this class.

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 166 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Vector<TScalarType, itkGetStaticConstMacro(SpaceDimension)> itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::InputVectorType

Standard vector type for this class.

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 148 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef vnl_vector_fixed<TScalarType, itkGetStaticConstMacro(SpaceDimension)> itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::InputVnlVectorType

Standard vnl_vector type for this class.

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 160 of file itkBSplineDeformableTransform.h.

typedef int itk::LightObject::InternalReferenceCountType
protectedinherited

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 137 of file itkLightObject.h.

typedef InverseTransformBaseType::Pointer itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::InverseTransformBasePointer
inherited

Reimplemented in itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.

Definition at line 129 of file itkTransform.h.

typedef TransformBase itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::InverseTransformBaseType
inherited

Base inverse transform type. This type should not be changed to the concrete inverse transform type or inheritance would be lost.

Reimplemented in itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.

Definition at line 124 of file itkTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Image<JacobianPixelType, itkGetStaticConstMacro(SpaceDimension)> itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::JacobianImageType
private

Definition at line 442 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef JacobianType::ValueType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::JacobianPixelType
private

Jacobian as SpaceDimension number of images.

Definition at line 440 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::JacobianType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::JacobianType

Standard Jacobian container.

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 144 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef ImageType::PointType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::OriginType

Definition at line 276 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef CovariantVector<TScalarType, itkGetStaticConstMacro(SpaceDimension)> itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::OutputCovariantVectorType

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 156 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Point<TScalarType, itkGetStaticConstMacro(SpaceDimension)> itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::OutputPointType

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 168 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Vector<TScalarType, itkGetStaticConstMacro(SpaceDimension)> itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::OutputVectorType

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 150 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef vnl_vector_fixed<TScalarType, itkGetStaticConstMacro(SpaceDimension)> itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::OutputVnlVectorType

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 162 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Array<unsigned long> itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::ParameterIndexArrayType

Parameter index array type.

Definition at line 317 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::ParametersType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::ParametersType

Standard parameters container.

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 141 of file itkBSplineDeformableTransform.h.

typedef Superclass::ParametersValueType itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::ParametersValueType
inherited

Type of the input parameters.

Reimplemented from itk::TransformBase.

Reimplemented in itk::ScaleLogarithmicTransform< TScalarType, NDimensions >.

Definition at line 98 of file itkTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef ParametersType::ValueType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::PixelType

Parameters as SpaceDimension number of images.

Definition at line 245 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef SmartPointer<Self> itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::Pointer

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 118 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef ImageRegion<itkGetStaticConstMacro(SpaceDimension)> itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::RegionType

Typedefs for specifying the extend to the grid.

Definition at line 270 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Superclass::ScalarType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::ScalarType

Standard scalar type for this class.

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 138 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef BSplineDeformableTransform itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::Self

Standard class typedefs.

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 116 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef RegionType::SizeType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::SizeType

Definition at line 273 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef ImageType::SpacingType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::SpacingType

Definition at line 274 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef Transform< TScalarType, NDimensions, NDimensions > itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::Superclass

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 117 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef BSplineInterpolationWeightFunction<ScalarType, itkGetStaticConstMacro(SpaceDimension), itkGetStaticConstMacro(SplineOrder)> itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::WeightsFunctionType

Interpolation weights function type.

Definition at line 311 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
typedef WeightsFunctionType::WeightsType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::WeightsType

Definition at line 312 of file itkBSplineDeformableTransform.h.

Constructor & Destructor Documentation

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::BSplineDeformableTransform ( )
protected 
                      Fixed Parameters store the following information:

Grid Size Grid Origin Grid Spacing Grid Direction The size of these is equal to the NInputDimensions

Definition at line 33 of file itkBSplineDeformableTransform.txx.

References itk::Size< VDimension >::Fill(), and NULL.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::~BSplineDeformableTransform ( )
protectedvirtual

Definition at line 133 of file itkBSplineDeformableTransform.txx.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::BSplineDeformableTransform ( const Self &  )
private

Member Function Documentation

unsigned long itk::Object::AddObserver ( const EventObject &  event,
Command *  cmd 
)
inherited

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

Definition at line 389 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), itk::ProgressAccumulator::RegisterInternalFilter(), otb::ImageFileWriter< TInputImage >::Update(), and otb::WriterWatcherBase::WriterWatcherBase().

unsigned long itk::Object::AddObserver ( const EventObject &  event,
Command *  cmd 
) const
inherited

Definition at line 401 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

void itk::LightObject::BreakOnError ( )
staticinherited

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

Definition at line 149 of file itkLightObject.cxx.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
itk::LightObject::Pointer itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::CreateAnother ( void  ) const
virtual

CreateAnother method will clone the existing instance of this type, including its internal member variables.

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 161 of file itkBSplineDeformableTransform.txx.

References itk::SmartPointer< TObjectType >::GetPointer().

void itk::Object::DebugOff ( ) const
virtualinherited

Turn debugging output off.

Definition at line 253 of file itkObject.cxx.

void itk::Object::DebugOn ( ) const
virtualinherited

Turn debugging output on.

Definition at line 242 of file itkObject.cxx.

void itk::LightObject::Delete ( )
virtualinherited

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

Delete a itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C++ delete method will not work with reference counting.

Definition at line 88 of file itkLightObject.cxx.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual const BulkTransformType* itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetBulkTransform ( )
virtual
template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual ImagePointer* itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetCoefficientImage ( )
inlinevirtual

Get the array of coefficient images.

Definition at line 250 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual const ImagePointer* itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetCoefficientImage ( ) const
inlinevirtual

Definition at line 252 of file itkBSplineDeformableTransform.h.

Command * itk::Object::GetCommand ( unsigned long  tag)
inherited

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

Definition at line 414 of file itkObject.cxx.

References itk::Object::GetCommand(), and NULL.

Referenced by itk::Object::GetCommand().

bool itk::Object::GetDebug ( ) const
inherited

Get the value of the debug flag.

Definition at line 264 of file itkObject.cxx.

Referenced by otb::ogr::ImageReference< double >::GetDebug().

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
const BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::ParametersType & itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetFixedParameters ( void  ) const
virtual

Get the Transformation Fixed Parameters.

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 588 of file itkBSplineDeformableTransform.txx.

References itk::ImageRegion< VImageDimension >::GetSize().

bool itk::Object::GetGlobalWarningDisplay ( )
staticinherited

Get the value of the global debug output control flag.

Definition at line 381 of file itkObject.cxx.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual DirectionType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetGridDirection ( ) const
virtual
template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual OriginType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetGridOrigin ( ) const
virtual
template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual RegionType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetGridRegion ( ) const
virtual
template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual SpacingType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetGridSpacing ( ) const
virtual
unsigned int itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::GetInputSpaceDimension ( void  ) const
inlinevirtualinherited

Get the size of the input space

Implements itk::TransformBase.

Definition at line 86 of file itkTransform.h.

bool itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::GetInverse ( Self *  ) const
inlineinherited

Returns a boolean indicating whether it is possible or not to compute the inverse of this current Transform. If it is possible, then the inverse of the transform is returned in the inverseTransform variable passed by the user. The inverse is recomputed if this current transform has been modified. This method is intended to be overriden by derived classes.

Reimplemented in itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.

Definition at line 237 of file itkTransform.h.

virtual InverseTransformBasePointer itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::GetInverseTransform ( ) const
inlinevirtualinherited

Return an inverse of this transform. If the inverse has not been implemented, return NULL. The type of the inverse transform does not necessarily need to match the type of the forward transform. This allows one to return a numeric inverse transform instead.

Reimplemented in itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.

Definition at line 245 of file itkTransform.h.

virtual const JacobianType& itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::GetJacobian ( const InputPointType &  ) const
inlinevirtualinherited 
 Compute the Jacobian of the transformation

This method computes the Jacobian matrix of the transformation
at a given input point. The rank of the Jacobian will also indicate 
if the transform is invertible at this point.

The Jacobian is be expressed as a matrix of partial derivatives of the
output point components with respect to the parameters that defined
the transform:

\[ J=\left[ \begin{array}{cccc} \frac{\partial x_{1}}{\partial p_{1}} & \frac{\partial x_{1}}{\partial p_{2}} & \cdots & \frac{\partial x_{1}}{\partial p_{m}}\\ \frac{\partial x_{2}}{\partial p_{1}} & \frac{\partial x_{2}}{\partial p_{2}} & \cdots & \frac{\partial x_{2}}{\partial p_{m}}\\ \vdots & \vdots & \ddots & \vdots \\ \frac{\partial x_{n}}{\partial p_{1}} & \frac{\partial x_{n}}{\partial p_{2}} & \cdots & \frac{\partial x_{n}}{\partial p_{m}} \end{array}\right] \]

Reimplemented in itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 217 of file itkTransform.h.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetJacobian ( const InputPointType &  inputPoint,
WeightsType &  weights,
ParameterIndexArrayType &  indices 
) const
virtual

Definition at line 955 of file itkBSplineDeformableTransform.txx.

References itk::Array< TValueType >::Fill(), itk::ImageRegion< VImageDimension >::SetIndex(), and itk::ImageRegion< VImageDimension >::SetSize().

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
const BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::JacobianType & itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetJacobian ( const InputPointType &  point) const
virtual

Compute the Jacobian Matrix of the transformation at one point

Definition at line 859 of file itkBSplineDeformableTransform.txx.

References NULL, itk::ImageRegion< VImageDimension >::SetIndex(), and itk::ImageRegion< VImageDimension >::SetSize().

MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  )
inherited
Returns:
A reference to this objects MetaDataDictionary.
Warning:
This reference may be changed.

Reimplemented in otb::ImageMetadataInterfaceBase.

Definition at line 532 of file itkObject.cxx.

References NULL.

Referenced by otb::RenderingImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData(), itk::Brains2MaskImageIO::CanReadFile(), otb::DataNode< TPrecision, VDimension, TValuePrecision >::CopyFieldList(), otb::VectorImage< TPixel, VImageDimension >::CopyInformation(), otb::Image< TPixel, VImageDimension >::CopyInformation(), itk::GDCMImageIO::GetBodyPart(), itk::GDCMImageIO::GetInstitution(), itk::GDCMImageIO::GetManufacturer(), itk::GDCMImageIO::GetModality(), itk::GDCMImageIO::GetModel(), itk::GDCMImageIO::GetNumberOfSeriesInStudy(), itk::GDCMImageIO::GetNumberOfStudyRelatedSeries(), itk::GDCMImageIO::GetPatientAge(), itk::GDCMImageIO::GetPatientDOB(), itk::GDCMImageIO::GetPatientID(), itk::GDCMImageIO::GetPatientName(), itk::GDCMImageIO::GetPatientSex(), itk::GDCMImageIO::GetScanOptions(), itk::GDCMImageIO::GetStudyDate(), itk::GDCMImageIO::GetStudyDescription(), itk::GDCMImageIO::GetStudyID(), itk::GDCMImageIO::GetValueFromTag(), otb::GDALImageIO::InternalReadImageInformation(), itk::GDCMImageIO::InternalReadImageInformation(), otb::GDALImageIO::InternalWriteImageInformation(), otb::RAMDrivenAdaptativeStreamingManager< TImage >::PrepareStreaming(), itk::DICOMImageIO2::Read(), itk::DICOMImageIO2::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), otb::JPEG2000ImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), itk::MRCImageIO::ReadImageInformation(), itk::IPLCommonImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), otb::ImageMetadataInterfaceBase::SetImage(), itk::NiftiImageIO::SetImageIOMetadataFromNIfTI(), otb::VectorDataToLabelImageFilter< TVectorData, TOutputImage >::SetOutputParametersFromImage(), itk::NrrdImageIO::Write(), itk::GDCMImageIO::Write(), and itk::PolygonGroupSpatialObjectXMLFileWriter::WriteFile().

const MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  ) const
inherited
Returns:
A constant reference to this objects MetaDataDictionary.

Reimplemented in otb::ImageMetadataInterfaceBase.

Definition at line 543 of file itkObject.cxx.

References NULL.

unsigned long itk::Object::GetMTime ( void  ) const
virtualinherited

Return this objects modified time.

Return the modification for this object.

Reimplemented in itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::SpatialObject< TDimension >, itk::SpatialObject< 3 >, itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::MeshSpatialObject< TMesh >, and itk::SceneSpatialObject< TSpaceDimension >.

Definition at line 286 of file itkObject.cxx.

Referenced by itk::DeformationFieldSource< TOutputImage >::GetMTime(), itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >::GetMTime(), itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< TDimension >::GetMTime(), itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime(), otb::Function::NoStretchRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), itk::VTKImageExportBase::PipelineModifiedCallback(), and itk::ProcessObject::UpdateOutputInformation().

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual const char* itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
unsigned int itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetNumberOfAffectedWeights ( ) const

Definition at line 1032 of file itkBSplineDeformableTransform.txx.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
unsigned int itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetNumberOfParameters ( void  ) const
virtual

Return the number of parameters that completely define the Transfom

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 177 of file itkBSplineDeformableTransform.txx.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
unsigned int itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetNumberOfParametersPerDimension ( void  ) const

Return the number of parameters per dimension

Definition at line 192 of file itkBSplineDeformableTransform.txx.

Referenced by itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Initialize().

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
unsigned long itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetNumberOfWeights ( ) const
inline

Get number of weights.

Definition at line 339 of file itkBSplineDeformableTransform.h.

Referenced by itk::ImageToImageMetric< TFixedImage, TMovingImage >::MultiThreadingInitialize().

unsigned int itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::GetOutputSpaceDimension ( void  ) const
inlinevirtualinherited

Get the size of the output space

Implements itk::TransformBase.

Definition at line 89 of file itkTransform.h.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
const BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::ParametersType & itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetParameters ( void  ) const
virtual

Get the Transformation Parameters.

NOTE: For efficiency, this class does not keep a copy of the parameters - it just keeps pointer to input parameters.

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 568 of file itkBSplineDeformableTransform.txx.

References NULL.

virtual int itk::LightObject::GetReferenceCount ( ) const
inlinevirtualinherited

Gets the reference count on this object.

Definition at line 105 of file itkLightObject.h.

virtual std::string itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::GetTransformTypeAsString ( ) const
virtualinherited

Generate a platform independant name

GenerateName

Implements itk::TransformBase.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual const RegionType& itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetValidRegion ( )
virtual

Return the region of the grid wholly within the support region

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual WeightsFunctionType* itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetWeightsFunction ( )
protectedvirtual
static void itk::Object::GlobalWarningDisplayOff ( )
inlinestaticinherited

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

Referenced by itk::OutputWindow::DisplayText(), itk::Win32OutputWindow::PromptText(), and itk::Win32OutputWindow::WndProc().

static void itk::Object::GlobalWarningDisplayOn ( )
inlinestaticinherited

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

bool itk::Object::HasObserver ( const EventObject &  event) const
inherited

Return true if an observer is registered for this event.

Definition at line 467 of file itkObject.cxx.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
bool itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::InsideValidRegion ( const ContinuousIndexType &  index) const
private

Check if a continuous index is inside the valid region.

Definition at line 695 of file itkBSplineDeformableTransform.txx.

void itk::Object::InvokeEvent ( const EventObject &  event)
inherited

Call Execute on all the Commands observing this event id.

Definition at line 446 of file itkObject.cxx.

Referenced by otb::Wrapper::Application::AddProcess(), itk::ParallelSparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::IterateThreaderCallback(), and itk::VTKImageExportBase::UpdateDataCallback().

void itk::Object::InvokeEvent ( const EventObject &  event) const
inherited

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

Definition at line 457 of file itkObject.cxx.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual bool itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::IsLinear ( ) const
inlinevirtual

Indicates that this transform is linear. That is, given two points P and Q, and scalar coefficients a and b, then 

      T( a*P + b*Q ) = a * T(P) + b * T(Q)

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 384 of file itkBSplineDeformableTransform.h.

void itk::Object::Modified ( void  ) const
virtualinherited

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Make sure this object's modified time is greater than all others.

Reimplemented in otb::SVMModel< TValue, TLabel >, otb::SurfaceAdjacencyEffect6SCorrectionSchemeFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, otb::GenericRSTransform< TScalarType, NInputDimensions, NOutputDimensions >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, TBufferConverter >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, MeanShift::VectorBufferConverter >, otb::GCPsToRPCSensorModelImageFilter< TImage >, otb::Polygon< TValue >, otb::ImageRegionAdaptativeSplitter< VImageDimension >, otb::GenericInterpolateImageFunction< TInputImage, TFunction, TBoundaryCondition, TCoordRep >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, otb::PolyLineParametricPathWithValue< TValue, VDimension >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, otb::PolyLineParametricPathWithValue< TValue, 2 >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, otb::PhysicalToRPCSensorModelImageFilter< TImage >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, TFilter >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, RankImageFilter< TInputImage, TInputImage, FlatStructuringElement< ::itk::GetImageDimension< TInputImage >::ImageDimension > > >, itk::NormalizeImageFilter< TInputImage, TOutputImage >, and otb::StatisticsXMLFileReader< TMeasurementVector >.

Definition at line 297 of file itkObject.cxx.

Referenced by otb::Wrapper::InputImageListParameter::AddFromFileName(), otb::Wrapper::InputVectorDataListParameter::AddFromFileName(), otb::Wrapper::InputImageListParameter::AddImage(), otb::Wrapper::InputImageListParameter::AddNullElement(), otb::Wrapper::InputVectorDataListParameter::AddNullElement(), otb::Wrapper::StringListParameter::AddNullElement(), otb::VectorDataModel::AddPointToGeometry(), otb::Wrapper::InputVectorDataListParameter::AddVectorData(), otb::Wrapper::InputImageListParameter::ClearValue(), otb::Wrapper::InputVectorDataListParameter::ClearValue(), otb::VectorDataModel::DeleteGeometry(), otb::VectorDataModel::EndGeometry(), otb::Wrapper::InputImageListParameter::Erase(), otb::Wrapper::InputVectorDataListParameter::Erase(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), otb::ImageWidget< TInputImage >::LinearInterpolationOff(), otb::ImageWidget< TInputImage >::LinearInterpolationOn(), itk::MatrixOffsetTransformBase< TScalarType, NInputDimensions, NOutputDimensions >::MatrixOffsetTransformBase(), otb::ogr::ImageReference< double >::Modified(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetAutoMinMax(), otb::BlendingImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetBlendingFunction(), otb::ImageLayerGenerator< TImageLayer >::SetBlendingFunction(), otb::TileMapImageIO::SetCacheDirectory(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetChannelList(), itk::LBFGSBOptimizer::SetCostFunction(), itk::MINC2ImageIO::SetDimensionName(), itk::ImageIOBase::SetDimensions(), itk::ImageIOBase::SetDirection(), otb::Wrapper::InputImageListParameter::SetImageList(), itk::GDCMSeriesFileNames::SetInputDirectory(), otb::HistogramStatisticsFunction< TInputHistogram, TOutput >::SetInputHistogram(), otb::ImageToGenericRSOutputParameters< TImage >::SetInputKeywordList(), otb::Wrapper::InputVectorDataListParameter::SetListFromFileName(), otb::Wrapper::InputImageListParameter::SetListFromFileName(), otb::Function::RenderingFunction< TPixel, TRGBPixel >::SetListSample(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), otb::Wrapper::InputImageListParameter::SetNthFileName(), otb::Wrapper::InputVectorDataListParameter::SetNthFileName(), itk::ImageIOBase::SetNumberOfDimensions(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ImageIOBase::SetOrigin(), otb::ImageToGenericRSOutputParameters< TImage >::SetOutputProjectionRef(), otb::MapProjectionAdapter::SetParameter(), otb::Function::GaussianRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetParameters(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetParameters(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), otb::ImageLayerGenerator< TImageLayer >::SetRenderingFunction(), otb::RenderingImageFilter< TInputImage, TOutputImage >::SetRenderingFunction(), itk::ImageIOBase::SetSpacing(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation(), otb::Wrapper::OutputFilenameParameter::SetValue(), otb::Wrapper::InputFilenameParameter::SetValue(), otb::Wrapper::ListViewParameter::SetValue(), otb::Wrapper::ChoiceParameter::SetValue(), otb::Wrapper::InputVectorDataListParameter::SetVectorDataList(), and otb::MapProjectionAdapter::SetWkt().

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::Pointer itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::New ( void  )
static

New macro for creation of through the object factory.

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 144 of file itkBSplineDeformableTransform.txx.

References itk::SmartPointer< TObjectType >::IsNull(), and itk::SmartPointer< TObjectType >::UnRegister().

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::operator= ( const Self &  )
private
void itk::LightObject::Print ( std::ostream &  os,
Indent  indent = 0 
) const
inherited

Cause the object to print itself out.

Avoid DLL boundary problems. This function will be common to all itk objects. It just calls the header/self/trailer virtual print methods, which can be overriden by subclasses (any itk object).

Definition at line 135 of file itkLightObject.cxx.

References itk::Indent::GetNextIndent().

Referenced by itk::operator<<().

void itk::LightObject::PrintHeader ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Define a default print header for all objects.

Definition at line 320 of file itkLightObject.cxx.

bool itk::Object::PrintObservers ( std::ostream &  os,
Indent  indent 
) const
protectedinherited

Definition at line 478 of file itkObject.cxx.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Print contents of an BSplineDeformableTransform.

Reimplemented from itk::Object.

Definition at line 646 of file itkBSplineDeformableTransform.txx.

References itk::Indent::GetNameOfClass().

void itk::LightObject::PrintTrailer ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Define a default print trailer for all objects.

Definition at line 331 of file itkLightObject.cxx.

void itk::Object::Register ( ) const
virtualinherited

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

Definition at line 309 of file itkObject.cxx.

Referenced by itk::ObjectFactoryBase::RegisterFactory().

void itk::Object::RemoveAllObservers ( )
inherited

Remove all observers .

Definition at line 435 of file itkObject.cxx.

void itk::Object::RemoveObserver ( unsigned long  tag)
inherited

Remove the observer with this tag value.

Definition at line 425 of file itkObject.cxx.

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), and otb::ImageFileWriter< TInputImage >::Update().

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::SetBulkTransform ( const BulkTransformType *  _arg)
virtual

This method specifies the bulk transform to be applied. The default is the identity transform.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::SetCoefficientImage ( ImagePointer  images[])
virtual

Set the array of coefficient images.

This is an alternative API for setting the BSpline coefficients as an array of SpaceDimension images. The grid region spacing and origin is taken from the first image. It is assume that the buffered region of all the subsequent images are the same as the first image. Note that no error checking is done.

Warning: use either the SetParameters() or SetCoefficientImage() API. Mixing the two modes may results in unexpected results.

Definition at line 620 of file itkBSplineDeformableTransform.txx.

References NULL.

void itk::Object::SetDebug ( bool  debugFlag) const
inherited

Set the value of the debug flag. A non-zero value turns debugging on.

Definition at line 275 of file itkObject.cxx.

virtual void itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::SetFixedParameters ( const ParametersType &  )
inlinevirtualinherited

Set the fixed parameters and update internal transformation.

Implements itk::TransformBase.

Reimplemented in itk::TranslationTransform< TScalarType, NDimensions >.

Definition at line 178 of file itkTransform.h.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::SetFixedParameters ( const ParametersType &  parameters)

This method sets the fixed parameters of the transform. For a BSpline deformation transform, the parameters are the following: Grid Size, Grid Origin, and Grid Spacing

The fixed parameters are the three times the size of the templated dimensions. This function has the effect of make the following calls: transform->SetGridSpacing( spacing ); transform->SetGridOrigin( origin ); transform->SetGridDirection( direction ); transform->SetGridRegion( bsplineRegion );

This function was added to allow the transform to work with the itkTransformReader/Writer I/O filters.

Set the Grid Parameters

Set the Origin Parameters

Set the Spacing Parameters

Set the Direction Parameters

Definition at line 404 of file itkBSplineDeformableTransform.txx.

References itk::ImageRegion< VImageDimension >::SetSize().

void itk::Object::SetGlobalWarningDisplay ( bool  val)
staticinherited

This is a global flag that controls whether any debug, warning or error messages are displayed.

Set the value of the global debug output control flag.

Definition at line 370 of file itkObject.cxx.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::SetGridDirection ( const DirectionType &  spacing)
virtual

This method specifies the grid directions .

Definition at line 296 of file itkBSplineDeformableTransform.txx.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::SetGridOrigin ( const OriginType &  origin)
virtual

This method specifies the grid origin.

Definition at line 328 of file itkBSplineDeformableTransform.txx.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::SetGridRegion ( const RegionType &  region)
virtual

This method specifies the region over which the grid resides.

Definition at line 205 of file itkBSplineDeformableTransform.txx.

References itk::Size< VDimension >::GetSize(), and itk::Size< VDimension >::SetSize().

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::SetGridSpacing ( const SpacingType &  spacing)
virtual

This method specifies the grid spacing or resolution.

Definition at line 265 of file itkBSplineDeformableTransform.txx.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::SetIdentity ( )

This method can ONLY be invoked AFTER calling SetParameters(). This restriction is due to the fact that the BSplineDeformableTransform does not copy the array of paramters internally, instead it keeps a pointer to the user-provided array of parameters. This method is also in violation of the const-correctness of the parameters since the parameter array has been passed to the transform on a 'const' basis but the values get modified when the user invokes SetIdentity().

Definition at line 351 of file itkBSplineDeformableTransform.txx.

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary &  rhs)
inherited
Returns:
Set the MetaDataDictionary

Reimplemented in otb::ImageMetadataInterfaceBase.

Definition at line 554 of file itkObject.cxx.

References NULL.

Referenced by otb::VectorImage< TPixel, VImageDimension >::CopyInformation(), and otb::Image< TPixel, VImageDimension >::CopyInformation().

virtual void itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::SetParameters ( const ParametersType &  )
inlinevirtualinherited

Set the transformation parameters and update internal transformation. SetParameters gives the transform the option to set it's parameters by keeping a reference to the parameters, or by copying. To force the transform to copy it's parameters call SetParametersByValue.

See also:
SetParametersByValue

Implements itk::TransformBase.

Reimplemented in itk::TranslationTransform< TScalarType, NDimensions >.

Definition at line 155 of file itkTransform.h.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::SetParameters ( const ParametersType &  parameters)

This method sets the parameters of the transform. For a BSpline deformation transform, the parameters are the BSpline coefficients on a sparse grid.

The parameters are N number of N-D grid of coefficients. Each N-D grid is represented as a flat array of doubles (in the same configuration as an itk::Image). The N arrays are then concatenated to form one parameter array.

For efficiency, this transform does not make a copy of the parameters. It only keeps a pointer to the input parameters. It assumes that the memory is managed by the caller. Use SetParametersByValue to force the transform to call copy the parameters.

This method wraps each grid as itk::Image's using the user specified grid region, spacing and origin. NOTE: The grid region, spacing and origin must be set first.

Definition at line 371 of file itkBSplineDeformableTransform.txx.

virtual void itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::SetParametersByValue ( const ParametersType &  p)
inlinevirtualinherited

Set the transformation parameters and update internal transformation. This method forces the transform to copy the parameters. The default implementation is to call SetParameters. This call must be overridden if the transform normally implements SetParameters by keeping a reference to the parameters.

See also:
SetParameters

Implements itk::TransformBase.

Definition at line 165 of file itkTransform.h.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::SetParametersByValue ( const ParametersType &  parameters)

This method sets the parameters of the transform. For a BSpline deformation transform, the parameters are the BSpline coefficients on a sparse grid.

The parameters are N number of N-D grid of coefficients. Each N-D grid is represented as a flat array of doubles (in the same configuration as an itk::Image). The N arrays are then concatenated to form one parameter array.

This methods makes a copy of the parameters while for efficiency the SetParameters method does not.

This method wraps each grid as itk::Image's using the user specified grid region, spacing and origin. NOTE: The grid region, spacing and origin must be set first.

Definition at line 536 of file itkBSplineDeformableTransform.txx.

void itk::Object::SetReferenceCount ( int  ref)
virtualinherited

Sets the reference count (use with care)

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 347 of file itkObject.cxx.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::SetWeightsFunction ( WeightsFunctionType *  _arg)
protectedvirtual

Allow subclasses to access and manipulate the weights function.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual OutputCovariantVectorType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::TransformCovariantVector ( const InputCovariantVectorType &  ) const
inlinevirtual

Method to transform a CovariantVector - not applicable for this type of transform

Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.

Definition at line 360 of file itkBSplineDeformableTransform.h.

virtual OutputPointType itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::TransformPoint ( const InputPointType &  ) const
inlinevirtualinherited

Method to transform a point.

Reimplemented in itk::KernelTransform< TScalarType, NDimensions >.

Definition at line 132 of file itkTransform.h.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::OutputPointType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::TransformPoint ( const InputPointType &  point) const

Transform points by a BSpline deformable transformation.

Definition at line 838 of file itkBSplineDeformableTransform.txx.

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::TransformPoint ( const InputPointType &  inputPoint,
OutputPointType &  outputPoint,
WeightsType &  weights,
ParameterIndexArrayType &  indices,
bool &  inside 
) const
virtual

Transform points by a BSpline deformable transformation. On return, weights contains the interpolation weights used to compute the deformation and indices of the x (zeroth) dimension coefficient parameters in the support region used to compute the deformation. Parameter indices for the i-th dimension can be obtained by adding ( i * this->GetNumberOfParametersPerDimension() ) to the indices array.

Definition at line 734 of file itkBSplineDeformableTransform.txx.

References itk::FixedArray< TValueType, VLength >::Fill(), itk::ImageRegion< VImageDimension >::SetIndex(), and itk::ImageRegion< VImageDimension >::SetSize().

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::TransformPointToContinuousIndex ( const InputPointType &  point,
ContinuousIndexType &  index 
) const
protected

Convert an input point to a continuous index inside the BSpline grid

Definition at line 1007 of file itkBSplineDeformableTransform.txx.

virtual OutputVectorType itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVectorType &  ) const
inlinevirtualinherited

Method to transform a vector.

Definition at line 136 of file itkTransform.h.

virtual OutputVnlVectorType itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVnlVectorType &  ) const
inlinevirtualinherited

Method to transform a vnl_vector.

Definition at line 140 of file itkTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual OutputVectorType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::TransformVector ( const InputVectorType &  ) const
inlinevirtual

Method to transform a vector - not applicable for this type of transform.

Definition at line 344 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
virtual OutputVnlVectorType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::TransformVector ( const InputVnlVectorType &  ) const
inlinevirtual

Method to transform a vnl_vector - not applicable for this type of transform

Definition at line 352 of file itkBSplineDeformableTransform.h.

void itk::Object::UnRegister ( ) const
virtualinherited

Decrease the reference count (release by another object).

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 324 of file itkObject.cxx.

Referenced by itk::Object::New(), and itk::ObjectFactoryBase::UnRegisterFactory().

template<class TScalarType , unsigned int NDimensions, unsigned int VSplineOrder>
void itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::WrapAsImages ( )
protected

Wrap flat array into images of coefficients.

Wrap flat parameters array into SpaceDimension number of ITK images NOTE: For efficiency, parameters are not copied locally. The parameters are assumed to be maintained by the caller.

 Allocate memory for Jacobian and wrap into SpaceDimension number
 of ITK images

Definition at line 494 of file itkBSplineDeformableTransform.txx.

Member Data Documentation

const unsigned int itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::InputSpaceDimension
staticinherited

Dimension of the domain space.

Reimplemented in itk::IdentityTransform< TScalarType, NDimensions >.

Definition at line 82 of file itkTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
BulkTransformPointer itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_BulkTransform
private

The bulk transform.

Definition at line 412 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
ImagePointer itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_CoefficientImage[NDimensions]
private

Array of images representing the B-spline coefficients in each dimension.

Definition at line 437 of file itkBSplineDeformableTransform.h.

ParametersType itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::m_FixedParameters
mutableprotectedinherited

Definition at line 272 of file itkTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
DirectionType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_GridDirection
private

Definition at line 417 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
OriginType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_GridOrigin
private

Definition at line 418 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
RegionType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_GridRegion
private

Variables defining the coefficient grid extend.

Definition at line 415 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
SpacingType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_GridSpacing
private

Definition at line 416 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
DirectionType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_IndexToPoint
private

Definition at line 421 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
const ParametersType* itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_InputParametersPointer
private

Keep a pointer to the input parameters.

Definition at line 452 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
ParametersType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_InternalParametersBuffer
private

Internal parameters buffer.

Definition at line 455 of file itkBSplineDeformableTransform.h.

JacobianType itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::m_Jacobian
mutableprotectedinherited

Definition at line 273 of file itkTransform.h.

Referenced by itk::TranslationTransform< TScalarType, NDimensions >::TranslationTransform().

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
JacobianImageType::Pointer itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_JacobianImage[NDimensions]
private

Definition at line 444 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
IndexType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_LastJacobianIndex
mutableprivate

Keep track of last support region used in computing the Jacobian for fast resetting of Jacobian to zero.

Definition at line 449 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
unsigned long itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_Offset
private

Variables defining the interpolation support region.

Definition at line 426 of file itkBSplineDeformableTransform.h.

ParametersType itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::m_Parameters
mutableprotectedinherited

Definition at line 271 of file itkTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
DirectionType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_PointToIndex
private

Definition at line 420 of file itkBSplineDeformableTransform.h.

InternalReferenceCountType itk::LightObject::m_ReferenceCount
mutableprotectedinherited

Number of uses of this object by other objects.

Definition at line 141 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock
mutableprotectedinherited

Mutex lock to protect modification to the reference count

Definition at line 144 of file itkLightObject.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
bool itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_SplineOrderOdd
private

Definition at line 427 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
SizeType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_SupportSize
private

Definition at line 428 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
RegionType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_ValidRegion
private

Definition at line 423 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
IndexType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_ValidRegionFirst
private

Definition at line 430 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
IndexType itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_ValidRegionLast
private

Definition at line 429 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
WeightsFunctionType::Pointer itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_WeightsFunction
private

Pointer to function used to compute Bspline interpolation weights.

Definition at line 458 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
ImagePointer itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::m_WrappedImage[NDimensions]
private

Array holding images wrapped from the flat parameters.

Definition at line 433 of file itkBSplineDeformableTransform.h.

const unsigned int itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::OutputSpaceDimension
staticinherited

Reimplemented in itk::IdentityTransform< TScalarType, NDimensions >.

Definition at line 83 of file itkTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
const unsigned int itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::SpaceDimension = NDimensions
static

Dimension of the domain space.

Definition at line 132 of file itkBSplineDeformableTransform.h.

template<class TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
const unsigned int itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::SplineOrder = VSplineOrder
static

The BSpline order.

Definition at line 135 of file itkBSplineDeformableTransform.h.

The documentation for this class was generated from the following files:
Generated at Sun Feb 3 2013 01:17:43 for Orfeo Toolbox with doxygen 1.8.1.1