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itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions > Class Template Referenceabstract

Matrix and Offset transformation of a vector space (e.g. space coordinates) More...

#include <itkMatrixOffsetTransformBase.h>

+ Inheritance diagram for itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >:
+ Collaboration diagram for itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >:

Public Types

typedef InputPointType CenterType
 
typedef SmartPointer< const SelfConstPointer
 
typedef Array
< ParametersValueType
DerivativeType
 
typedef Matrix< double,
itkGetStaticConstMacro(OutputSpaceDimension),
itkGetStaticConstMacro(InputSpaceDimension)> 
DirectionChangeMatrix
 
typedef CovariantVector
< TScalar,
itkGetStaticConstMacro(InputSpaceDimension)> 
InputCovariantVectorType
 
typedef
Superclass::InputDiffusionTensor3DType 
InputDiffusionTensor3DType
 
typedef Matrix< double,
itkGetStaticConstMacro(InputSpaceDimension),
itkGetStaticConstMacro(InputSpaceDimension)> 
InputDirectionMatrix
 
typedef Point< TScalar,
itkGetStaticConstMacro(InputSpaceDimension)> 
InputPointType
 
typedef InputPointType::ValueType InputPointValueType
 
typedef
Superclass::InputSymmetricSecondRankTensorType 
InputSymmetricSecondRankTensorType
 
typedef CovariantVector
< TScalar,
InputDiffusionTensor3DType::Dimension > 
InputTensorEigenVectorType
 
typedef
Superclass::InputVectorPixelType 
InputVectorPixelType
 
typedef Vector< TScalar,
itkGetStaticConstMacro(InputSpaceDimension)> 
InputVectorType
 
typedef vnl_vector_fixed
< TScalar,
itkGetStaticConstMacro(InputSpaceDimension)> 
InputVnlVectorType
 
typedef Matrix< TScalar,
itkGetStaticConstMacro(InputSpaceDimension),
itkGetStaticConstMacro(OutputSpaceDimension)> 
InverseMatrixType
 
typedef
InverseTransformBaseType::Pointer 
InverseTransformBasePointer
 
typedef
Superclass::InverseTransformBaseType 
InverseTransformBaseType
 
typedef Superclass::JacobianType JacobianType
 
typedef Matrix< TScalar,
itkGetStaticConstMacro(OutputSpaceDimension),
itkGetStaticConstMacro(InputSpaceDimension)> 
MatrixType
 
typedef MatrixType::ValueType MatrixValueType
 
typedef
Superclass::NumberOfParametersType 
NumberOfParametersType
 
typedef OutputVectorType OffsetType
 
typedef OffsetType::ValueType OffsetValueType
 
typedef CovariantVector
< TScalar,
itkGetStaticConstMacro(OutputSpaceDimension)> 
OutputCovariantVectorType
 
typedef
Superclass::OutputDiffusionTensor3DType 
OutputDiffusionTensor3DType
 
typedef Matrix< double,
itkGetStaticConstMacro(OutputSpaceDimension),
itkGetStaticConstMacro(OutputSpaceDimension)> 
OutputDirectionMatrix
 
typedef Point< TScalar,
itkGetStaticConstMacro(OutputSpaceDimension)> 
OutputPointType
 
typedef OutputPointType::ValueType OutputPointValueType
 
typedef
Superclass::OutputSymmetricSecondRankTensorType 
OutputSymmetricSecondRankTensorType
 
typedef
Superclass::OutputVectorPixelType 
OutputVectorPixelType
 
typedef Vector< TScalar,
itkGetStaticConstMacro(OutputSpaceDimension)> 
OutputVectorType
 
typedef OutputVectorType::ValueType OutputVectorValueType
 
typedef vnl_vector_fixed
< TScalar,
itkGetStaticConstMacro(OutputSpaceDimension)> 
OutputVnlVectorType
 
typedef Superclass::ParametersType ParametersType
 
typedef
Superclass::ParametersValueType 
ParametersValueType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::ScalarType ScalarType
 
typedef MatrixOffsetTransformBase Self
 
typedef Transform< TScalar,
NInputDimensions,
NOutputDimensions > 
Superclass
 
typedef
Superclass::TransformCategoryType 
TransformCategoryType
 
typedef OutputVectorType TranslationType
 
typedef TranslationType::ValueType TranslationValueType
 

Public Member Functions

unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
void Compose (const Self *other, bool pre=0)
 
virtual void ComputeInverseJacobianWithRespectToPosition (const InputPointType &x, JacobianType &jac) const
 
virtual void ComputeInverseJacobianWithRespectToPosition (const InputPointType &x, JacobianType &jacobian) const
 
virtual void ComputeJacobianWithRespectToParameters (const InputPointType &x, JacobianType &j) const
 
virtual void ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const
 
virtual void ComputeJacobianWithRespectToPosition (const InputPointType &x, JacobianType &jac) const
 
virtual void ComputeJacobianWithRespectToPosition (const InputPointType &, JacobianType &) const
 
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
virtual void Delete ()
 
const InputPointTypeGetCenter () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
virtual const ParametersTypeGetFixedParameters (void) const
 
unsigned int GetInputSpaceDimension (void) const
 
bool GetInverse (Self *inverse) const
 
const InverseMatrixTypeGetInverseMatrix (void) const
 
virtual InverseTransformBasePointer GetInverseTransform () const
 
virtual const MatrixTypeGetMatrix () const
 
MetaDataDictionaryGetMetaDataDictionary (void)
 
const MetaDataDictionaryGetMetaDataDictionary (void) const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const char * GetNameOfClass () const
 
virtual NumberOfParametersType GetNumberOfLocalParameters (void) const
 
virtual NumberOfParametersType GetNumberOfParameters (void) const
 
virtual const std::string & GetObjectName ()
 
const OutputVectorTypeGetOffset (void) const
 
unsigned int GetOutputSpaceDimension (void) const
 
const ParametersTypeGetParameters (void) const
 
virtual int GetReferenceCount () const
 
virtual const TimeStampGetTimeStamp () const
 
virtual TransformCategoryType GetTransformCategory () const
 
virtual std::string GetTransformTypeAsString () const
 
const OutputVectorTypeGetTranslation (void) const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual bool IsLinear () const
 
 itkCloneMacro (Self)
 
virtual void Modified () const
 
void Print (std::ostream &os, Indent indent=0) const
 
virtual void Register () const
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetCenter (const InputPointType &center)
 
void SetDebug (bool debugFlag) const
 
virtual void SetFixedParameters (const ParametersType &)
 
virtual void SetFixedParameters (const ParametersType &)=0
 
virtual void SetIdentity (void)
 
virtual void SetMatrix (const MatrixType &matrix)
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetObjectName (std::string _arg)
 
void SetOffset (const OutputVectorType &offset)
 
void SetParameters (const ParametersType &parameters)
 
virtual void SetParameters (const ParametersType &)=0
 
virtual void SetParametersByValue (const ParametersType &p)=0
 
virtual void SetParametersByValue (const ParametersType &p)
 
virtual void SetReferenceCount (int)
 
void SetTranslation (const OutputVectorType &translation)
 
virtual OutputCovariantVectorType TransformCovariantVector (const InputCovariantVectorType &) const
 
virtual OutputCovariantVectorType TransformCovariantVector (const InputCovariantVectorType &vector, const InputPointType &point) const
 
virtual OutputVectorPixelType TransformCovariantVector (const InputVectorPixelType &) const
 
virtual OutputVectorPixelType TransformCovariantVector (const InputVectorPixelType &vector, const InputPointType &point) const
 
OutputCovariantVectorType TransformCovariantVector (const InputCovariantVectorType &vector) const
 
OutputVectorPixelType TransformCovariantVector (const InputVectorPixelType &vector) const
 
virtual OutputDiffusionTensor3DType TransformDiffusionTensor3D (const InputDiffusionTensor3DType &) const
 
virtual OutputDiffusionTensor3DType TransformDiffusionTensor3D (const InputDiffusionTensor3DType &tensor, const InputPointType &point) const
 
virtual OutputVectorPixelType TransformDiffusionTensor3D (const InputVectorPixelType &) const
 
virtual OutputVectorPixelType TransformDiffusionTensor3D (const InputVectorPixelType &tensor, const InputPointType &point) const
 
OutputDiffusionTensor3DType TransformDiffusionTensor3D (const InputDiffusionTensor3DType &tensor) const
 
OutputVectorPixelType TransformDiffusionTensor3D (const InputVectorPixelType &tensor) const
 
virtual OutputPointType TransformPoint (const InputPointType &) const =0
 
OutputPointType TransformPoint (const InputPointType &point) const
 
virtual
OutputSymmetricSecondRankTensorType 
TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &tensor, const InputPointType &point) const
 
virtual
OutputSymmetricSecondRankTensorType 
TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &) const
 
virtual OutputVectorPixelType TransformSymmetricSecondRankTensor (const InputVectorPixelType &) const
 
virtual OutputVectorPixelType TransformSymmetricSecondRankTensor (const InputVectorPixelType &tensor, const InputPointType &point) const
 
OutputSymmetricSecondRankTensorType TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &tensor) const
 
OutputVectorPixelType TransformSymmetricSecondRankTensor (const InputVectorPixelType &tensor) const
 
virtual OutputVectorType TransformVector (const InputVectorType &) const
 
virtual OutputVectorType TransformVector (const InputVectorType &vector, const InputPointType &point) const
 
virtual OutputVnlVectorType TransformVector (const InputVnlVectorType &) const
 
virtual OutputVnlVectorType TransformVector (const InputVnlVectorType &vector, const InputPointType &point) const
 
virtual OutputVectorPixelType TransformVector (const InputVectorPixelType &) const
 
virtual OutputVectorPixelType TransformVector (const InputVectorPixelType &vector, const InputPointType &point) const
 
OutputVectorType TransformVector (const InputVectorType &vector) const
 
OutputVnlVectorType TransformVector (const InputVnlVectorType &vector) const
 
OutputVectorPixelType TransformVector (const InputVectorPixelType &vector) const
 
virtual void UnRegister () const
 
virtual void UpdateTransformParameters (const DerivativeType &update, TScalar factor=1.0)
 

Static Public Member Functions

static void BreakOnError ()
 
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 

Static Public Attributes

static const unsigned int InputSpaceDimension = NInputDimensions
 
static const unsigned int OutputSpaceDimension = NOutputDimensions
 
static const unsigned int ParametersDimension = NOutputDimensions * ( NInputDimensions + 1 )
 

Protected Types

typedef int InternalReferenceCountType
 

Protected Member Functions

 MatrixOffsetTransformBase (const MatrixType &matrix, const OutputVectorType &offset)
 
 MatrixOffsetTransformBase (unsigned int paramDims)
 
 MatrixOffsetTransformBase ()
 
virtual ~MatrixOffsetTransformBase ()
 
virtual void ComputeMatrix (void)
 
virtual void ComputeMatrixParameters (void)
 
virtual void ComputeOffset (void)
 
virtual void ComputeTranslation (void)
 
const InverseMatrixTypeGetVarInverseMatrix (void) const
 
virtual LightObject::Pointer InternalClone () const
 
bool InverseMatrixIsOld (void) const
 
OutputDiffusionTensor3DType PreservationOfPrincipalDirectionDiffusionTensor3DReorientation (const InputDiffusionTensor3DType, const JacobianType) const
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
void PrintSelf (std::ostream &s, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
void SetVarCenter (const InputPointType &center)
 
void SetVarInverseMatrix (const InverseMatrixType &matrix) const
 
void SetVarMatrix (const MatrixType &matrix)
 
void SetVarOffset (const OutputVectorType &offset)
 
void SetVarTranslation (const OutputVectorType &translation)
 

Protected Attributes

DirectionChangeMatrix m_DirectionChange
 
ParametersType m_FixedParameters
 
ParametersType m_Parameters
 
InternalReferenceCountType m_ReferenceCount
 
SimpleFastMutexLock m_ReferenceCountLock
 

Private Member Functions

 MatrixOffsetTransformBase (const Self &other)
 
const Selfoperator= (const Self &)
 

Private Attributes

InputPointType m_Center
 
InverseMatrixType m_InverseMatrix
 
TimeStamp m_InverseMatrixMTime
 
MatrixType m_Matrix
 
TimeStamp m_MatrixMTime
 
OutputVectorType m_Offset
 
bool m_Singular
 
OutputVectorType m_Translation
 

Detailed Description

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
class itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >

Matrix and Offset transformation of a vector space (e.g. space coordinates)

This class serves as a base class for transforms that can be expressed as a linear transformation plus a constant offset (e.g., affine, similarity and rigid transforms). This base class also provides the concept of using a center of rotation and a translation instead of an offset.

As derived instances of this class are specializations of an affine transform, any two of these transformations may be composed and the result is an affine transformation. However, the order is important. Given two affine transformations T1 and T2, we will say that "precomposing T1 with T2" yields the transformation which applies T1 to the source, and then applies T2 to that result to obtain the target. Conversely, we will say that "postcomposing T1 with T2" yields the transformation which applies T2 to the source, and then applies T1 to that result to obtain the target. (Whether T1 or T2 comes first lexicographically depends on whether you choose to write mappings from right-to-left or vice versa; we avoid the whole problem by referring to the order of application rather than the textual order.)

Template Parameters
ScalarTThe type to be used for scalar numeric values. Either float or double.
NInputDimensionsThe number of dimensions of the input vector space.
NOutputDimensionsThe number of dimensions of the output vector space.

This class provides several methods for setting the matrix and offset defining the transform. To support the registration framework, the transform parameters can also be set as an Array<double> of size (NInputDimension + 1) * NOutputDimension using method SetParameters(). The first (NOutputDimension x NInputDimension) parameters defines the matrix in row-major order (where the column index varies the fastest). The last NOutputDimension parameters defines the translation in each dimensions.

Definition at line 76 of file itkMatrixOffsetTransformBase.h.

Member Typedef Documentation

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef InputPointType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::CenterType

Definition at line 176 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef SmartPointer<const Self> itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::ConstPointer

Definition at line 87 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Array<ParametersValueType> itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::DerivativeType
inherited

Definition at line 119 of file itkTransform.h.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Matrix<double, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)> itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::DirectionChangeMatrix
inherited

Definition at line 180 of file itkTransform.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef CovariantVector<TScalar, itkGetStaticConstMacro(InputSpaceDimension)> itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::InputCovariantVectorType

Standard covariant vector type for this class

Definition at line 124 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::InputDiffusionTensor3DType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::InputDiffusionTensor3DType

Standard diffusion tensor type for this class

Definition at line 134 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Matrix<double, itkGetStaticConstMacro(InputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)> itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::InputDirectionMatrix
inherited

Definition at line 176 of file itkTransform.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Point<TScalar, itkGetStaticConstMacro(InputSpaceDimension)> itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::InputPointType

Standard coordinate point type for this class

Definition at line 158 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef InputPointType::ValueType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::InputPointValueType

Definition at line 159 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::InputSymmetricSecondRankTensorType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::InputSymmetricSecondRankTensorType

Standard tensor type for this class

Definition at line 140 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef CovariantVector<TScalar, InputDiffusionTensor3DType::Dimension> itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::InputTensorEigenVectorType

Definition at line 145 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::InputVectorPixelType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::InputVectorPixelType

Definition at line 129 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Vector<TScalar, itkGetStaticConstMacro(InputSpaceDimension)> itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::InputVectorType

Standard vector type for this class

Definition at line 116 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef vnl_vector_fixed<TScalar, itkGetStaticConstMacro(InputSpaceDimension)> itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::InputVnlVectorType

Standard vnl_vector type for this class

Definition at line 150 of file itkMatrixOffsetTransformBase.h.

typedef int itk::LightObject::InternalReferenceCountType
protectedinherited

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 152 of file itkLightObject.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Matrix<TScalar, itkGetStaticConstMacro(InputSpaceDimension), itkGetStaticConstMacro(OutputSpaceDimension)> itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::InverseMatrixType

Standard inverse matrix type for this class

Definition at line 174 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef InverseTransformBaseType::Pointer itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::InverseTransformBasePointer

Definition at line 188 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::InverseTransformBaseType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::InverseTransformBaseType

Base inverse transform type. This type should not be changed to the concrete inverse transform type or inheritance would be lost.

Definition at line 187 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::JacobianType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::JacobianType

Jacobian Type

Definition at line 106 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Matrix<TScalar, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)> itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::MatrixType

Standard matrix type for this class

Definition at line 168 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef MatrixType::ValueType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::MatrixValueType

Definition at line 169 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::NumberOfParametersType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::NumberOfParametersType
inherited

Definition at line 182 of file itkTransform.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef OutputVectorType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OffsetType

Definition at line 178 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef OffsetType::ValueType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OffsetValueType

Definition at line 179 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef CovariantVector<TScalar, itkGetStaticConstMacro(OutputSpaceDimension)> itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputCovariantVectorType

Definition at line 127 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::OutputDiffusionTensor3DType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputDiffusionTensor3DType

Definition at line 136 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Matrix<double, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(OutputSpaceDimension)> itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::OutputDirectionMatrix
inherited

Definition at line 172 of file itkTransform.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Point<TScalar, itkGetStaticConstMacro(OutputSpaceDimension)> itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputPointType

Definition at line 162 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef OutputPointType::ValueType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputPointValueType

Definition at line 163 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::OutputSymmetricSecondRankTensorType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputSymmetricSecondRankTensorType

Definition at line 142 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::OutputVectorPixelType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputVectorPixelType

Definition at line 130 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Vector<TScalar, itkGetStaticConstMacro(OutputSpaceDimension)> itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputVectorType

Definition at line 118 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef OutputVectorType::ValueType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputVectorValueType

Definition at line 119 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef vnl_vector_fixed<TScalar, itkGetStaticConstMacro(OutputSpaceDimension)> itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputVnlVectorType

Definition at line 153 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::ParametersType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::ParametersType

Parameters Type

Definition at line 102 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::ParametersValueType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::ParametersValueType

Definition at line 103 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef SmartPointer<Self> itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::Pointer

Definition at line 86 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::ScalarType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::ScalarType

Standard scalar type for this class

Definition at line 112 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef MatrixOffsetTransformBase itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::Self

Standard typedefs

Definition at line 81 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Transform<TScalar, NInputDimensions, NOutputDimensions> itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::Superclass

Definition at line 84 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef Superclass::TransformCategoryType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::TransformCategoryType

Transform category type.

Definition at line 109 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef OutputVectorType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::TranslationType

Definition at line 181 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
typedef TranslationType::ValueType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::TranslationValueType

Definition at line 183 of file itkMatrixOffsetTransformBase.h.

Constructor & Destructor Documentation

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::MatrixOffsetTransformBase ( const MatrixType matrix,
const OutputVectorType offset 
)
protected

Construct an MatrixOffsetTransformBase object

This method constructs a new MatrixOffsetTransformBase object and initializes the matrix and offset parts of the transformation to values specified by the caller. If the arguments are omitted, then the MatrixOffsetTransformBase is initialized to an identity transformation in the appropriate number of dimensions.

Definition at line 69 of file itkMatrixOffsetTransformBase.hxx.

References itk::FixedArray< TValueType, VLength >::Fill().

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::MatrixOffsetTransformBase ( unsigned int  paramDims)
protected

Definition at line 52 of file itkMatrixOffsetTransformBase.hxx.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::MatrixOffsetTransformBase ( )
protected

Definition at line 33 of file itkMatrixOffsetTransformBase.hxx.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::~MatrixOffsetTransformBase ( )
protectedvirtual

Destroy an MatrixOffsetTransformBase object

Definition at line 87 of file itkMatrixOffsetTransformBase.hxx.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::MatrixOffsetTransformBase ( const Self other)
private

Member Function Documentation

unsigned long itk::Object::AddObserver ( const EventObject event,
Command cmd 
)
inherited

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

Definition at line 398 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), itk::ProgressAccumulator::RegisterInternalFilter(), otb::ImageFileWriter< TInputImage >::Update(), and otb::WriterWatcherBase::WriterWatcherBase().

unsigned long itk::Object::AddObserver ( const EventObject event,
Command cmd 
) const
inherited

Definition at line 409 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

void itk::LightObject::BreakOnError ( )
staticinherited

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

Definition at line 150 of file itkLightObject.cxx.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::Compose ( const Self other,
bool  pre = 0 
)

Compose with another MatrixOffsetTransformBase

This method composes self with another MatrixOffsetTransformBase of the same dimension, modifying self to be the composition of self and other. If the argument pre is true, then other is precomposed with self; that is, the resulting transformation consists of first applying other to the source, followed by self. If pre is false or omitted, then other is post-composed with self; that is the resulting transformation consists of first applying self to the source, followed by other. This updates the Translation based on current center.

Definition at line 153 of file itkMatrixOffsetTransformBase.hxx.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::ComputeInverseJacobianWithRespectToPosition ( const InputPointType x,
JacobianType jac 
) const
virtual

Get the jacobian with respect to position. This simply returns the inverse of the current Matrix. jac will be resized as needed, but it's more efficient if it's already properly sized.

Definition at line 706 of file itkMatrixOffsetTransformBase.hxx.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
void itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::ComputeInverseJacobianWithRespectToPosition ( const InputPointType pnt,
JacobianType jacobian 
) const
virtualinherited

This provides the ability to get a local jacobian value in a dense/local transform, e.g. DisplacementFieldTransform. For such transforms it would be unclear what parameters would refer to. Generally, global transforms should return an indentity jacobian since there is no change with respect to position.

ComputeInverseJacobianWithRespectToPosition

Reimplemented in itk::MatrixOffsetTransformBase< TScalar, NDimensions, NDimensions >, itk::MatrixOffsetTransformBase< TScalar, 2, 2 >, and itk::MatrixOffsetTransformBase< TScalar, 3, 3 >.

Definition at line 539 of file itkTransform.hxx.

References itk::Array2D< TValueType >::SetSize().

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::ComputeJacobianWithRespectToParameters ( const InputPointType x,
JacobianType j 
) const
virtual

Compute the Jacobian of the transformation

This method computes the Jacobian matrix of the transformation. given point or vector, returning the transformed point or vector. The rank of the Jacobian will also indicate if the transform is invertible at this point. Get local Jacobian for the given point j will sized properly as needed.

Definition at line 655 of file itkMatrixOffsetTransformBase.hxx.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual void itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::ComputeJacobianWithRespectToParameters ( const InputPointType ,
JacobianType  
) const
inlinevirtualinherited

Compute the Jacobian of the transformation

This method computes the Jacobian matrix of the transformation at a given input point. The rank of the Jacobian will also indicate if the transform is invertible at this point.

The Jacobian is be expressed as a matrix of partial derivatives of the output point components with respect to the parameters that defined the transform:

\[ J=\left[ \begin{array}{cccc} \frac{\partial x_{1}}{\partial p_{1}} & \frac{\partial x_{1}}{\partial p_{2}} & \cdots & \frac{\partial x_{1}}{\partial p_{m}}\\ \frac{\partial x_{2}}{\partial p_{1}} & \frac{\partial x_{2}}{\partial p_{2}} & \cdots & \frac{\partial x_{2}}{\partial p_{m}}\\ \vdots & \vdots & \ddots & \vdots \\ \frac{\partial x_{n}}{\partial p_{1}} & \frac{\partial x_{n}}{\partial p_{2}} & \cdots & \frac{\partial x_{n}}{\partial p_{m}} \end{array}\right] \]

This is also used for efficient computation of a point-local jacobian for dense transforms. jacobian is assumed to be thread-local variable, otherwise memory corruption will most likely occur during multi-threading. To avoid repeatitive memory allocation, pass in 'jacobian' with its size already set.

Reimplemented in itk::MatrixOffsetTransformBase< TScalar, NDimensions, NDimensions >, itk::MatrixOffsetTransformBase< TScalar, 2, 2 >, and itk::MatrixOffsetTransformBase< TScalar, 3, 3 >.

Definition at line 508 of file itkTransform.h.

Referenced by itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ComputePDFDerivatives(), and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeThreadProcessSample().

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::ComputeJacobianWithRespectToPosition ( const InputPointType x,
JacobianType jac 
) const
virtual

Get the jacobian with respect to position. This simply returns the current Matrix. jac will be resized as needed, but it's more efficient if it's already properly sized.

Definition at line 688 of file itkMatrixOffsetTransformBase.hxx.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual void itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::ComputeJacobianWithRespectToPosition ( const InputPointType ,
JacobianType  
) const
inlinevirtualinherited

This provides the ability to get a local jacobian value in a dense/local transform, e.g. DisplacementFieldTransform. For such transforms it would be unclear what parameters would refer to. Generally, global transforms should return an indentity jacobian since there is no change with respect to position.

Reimplemented in itk::MatrixOffsetTransformBase< TScalar, NDimensions, NDimensions >, itk::MatrixOffsetTransformBase< TScalar, 2, 2 >, and itk::MatrixOffsetTransformBase< TScalar, 3, 3 >.

Definition at line 522 of file itkTransform.h.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::ComputeMatrix ( void  )
protectedvirtual
template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::ComputeMatrixParameters ( void  )
protectedvirtual
template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::ComputeOffset ( void  )
protectedvirtual
template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::ComputeTranslation ( void  )
protectedvirtual
template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual::itk::LightObject::Pointer itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

void itk::Object::DebugOff ( ) const
virtualinherited

Turn debugging output off.

Definition at line 253 of file itkObject.cxx.

void itk::Object::DebugOn ( ) const
virtualinherited

Turn debugging output on.

Definition at line 243 of file itkObject.cxx.

void itk::LightObject::Delete ( )
virtualinherited

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

Delete a itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C++ delete method will not work with reference counting.

Definition at line 91 of file itkLightObject.cxx.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
const InputPointType& itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::GetCenter ( void  ) const
inline

Get center of rotation of the MatrixOffsetTransformBase

This method returns the point used as the fixed center of rotation for the MatrixOffsetTransformBase. To define an affine transform, you must set the matrix, center, and translation OR the matrix and offset

Definition at line 291 of file itkMatrixOffsetTransformBase.h.

Referenced by itk::MetaSceneConverter< NDimensions, PixelType, TMeshTraits >::SetTransform().

Command * itk::Object::GetCommand ( unsigned long  tag)
inherited

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to assign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

Definition at line 421 of file itkObject.cxx.

References itk::Object::GetCommand(), and NULL.

Referenced by itk::Object::GetCommand().

bool itk::Object::GetDebug ( ) const
inherited

Get the value of the debug flag.

Definition at line 263 of file itkObject.cxx.

Referenced by otb::ogr::ImageReference< double >::GetDebug().

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
const MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::ParametersType & itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::GetFixedParameters ( void  ) const
virtual
bool itk::Object::GetGlobalWarningDisplay ( )
staticinherited

Get the value of the global debug output control flag.

Definition at line 391 of file itkObject.cxx.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
unsigned int itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetInputSpaceDimension ( void  ) const
inlinevirtualinherited
template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
bool itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::GetInverse ( Self inverse) const

Create inverse of an affine transformation

This populates the parameters an affine transform such that the transform is the inverse of self. If self is not invertible, an exception is thrown. Note that by default the inverese transform is centered at the origin. If you need to compute the inverse centered at a point, p,

transform2->SetCenter( p );
transform1->GetInverse( transform2 );

transform2 will now contain the inverse of transform1 and will with its center set to p. Flipping the two statements will produce an incorrect transform.

Definition at line 499 of file itkMatrixOffsetTransformBase.hxx.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
const MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::InverseMatrixType & itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::GetInverseMatrix ( void  ) const
Deprecated:
Use GetInverse for public API instead. Method will eventually be made a protected member function

Definition at line 474 of file itkMatrixOffsetTransformBase.hxx.

References itk::Matrix< T, NRows, NColumns >::GetInverse().

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::InverseTransformBasePointer itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::GetInverseTransform ( ) const
virtual
template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual const MatrixType& itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::GetMatrix ( void  ) const
inlinevirtual

Get matrix of an MatrixOffsetTransformBase

This method returns the value of the matrix of the MatrixOffsetTransformBase. To define an affine transform, you must set the matrix, center, and translation OR the matrix and offset

Definition at line 228 of file itkMatrixOffsetTransformBase.h.

Referenced by itk::MetaSceneConverter< NDimensions, PixelType, TMeshTraits >::SetTransform().

MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  )
inherited
const MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  ) const
inherited
Returns
A constant reference to this objects MetaDataDictionary.

Definition at line 548 of file itkObject.cxx.

References NULL.

ModifiedTimeType itk::Object::GetMTime ( void  ) const
virtualinherited

Return this objects modified time.

Return the modification for this object.

Reimplemented in itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexConjugatePixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType, TTransformPrecisionType >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::SpatialObject< VDimension >, itk::SpatialObject< 3 >, itk::SpatialObject< TDimension >, itk::SpatialObject< TMesh::PointDimension >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::InverseDisplacementFieldImageFilter< TInputImage, TOutputImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::TransformToDisplacementFieldSource< TOutputImage, TTransformPrecisionType >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::LandmarkDisplacementFieldSource< TOutputImage >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::MeshSpatialObject< TMesh >, and itk::SceneSpatialObject< TSpaceDimension >.

Definition at line 283 of file itkObject.cxx.

Referenced by itk::LandmarkDisplacementFieldSource< TOutputImage >::GetMTime(), itk::DeformationFieldSource< TOutputImage >::GetMTime(), itk::TransformToDisplacementFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::InverseDisplacementFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >::GetMTime(), itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< VDimension >::GetMTime(), itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType, TTransformPrecisionType >::GetMTime(), itk::SpatialObject< TMesh::PointDimension >::GetObjectMTime(), and itk::ProcessObject::UpdateOutputInformation().

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual const char* itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::GetNameOfClass ( ) const
virtual
template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual NumberOfParametersType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetNumberOfLocalParameters ( void  ) const
inlinevirtualinherited

Return the number of local parameters that completely defines the Transform at an individual voxel. For transforms with local support, this will enable downstream computation of the jacobian wrt only the local support region. For instance, in the case of a deformation field, this will be equal to the number of image dimensions. If it is an affine transform, this will be the same as the GetNumberOfParameters().

Reimplemented in itk::DisplacementFieldTransform< TScalar, NDimensions >, itk::CompositeTransform< TScalar, NDimensions >, itk::BSplineBaseTransform< TScalar, NDimensions, VSplineOrder >, itk::MultiTransform< TScalar, NDimensions, NSubDimensions >, and itk::MultiTransform< TScalar, NDimensions >.

Definition at line 400 of file itkTransform.h.

Referenced by itk::MultiTransform< TScalar, NDimensions, NSubDimensions >::GetNumberOfLocalParameters().

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual NumberOfParametersType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetNumberOfParameters ( void  ) const
inlinevirtualinherited
virtual const std::string& itk::Object::GetObjectName ( )
virtualinherited
template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
const OutputVectorType& itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::GetOffset ( void  ) const
inline

Get offset of an MatrixOffsetTransformBase

This method returns the offset value of the MatrixOffsetTransformBase. To define an affine transform, you must set the matrix, center, and translation OR the matrix and offset

Definition at line 252 of file itkMatrixOffsetTransformBase.h.

Referenced by itk::MetaSceneConverter< NDimensions, PixelType, TMeshTraits >::SetTransform().

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
unsigned int itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetOutputSpaceDimension ( void  ) const
inlinevirtualinherited
template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
const MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::ParametersType & itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::GetParameters ( void  ) const
virtual

Get the Transformation Parameters.

Reimplemented from itk::Transform< TScalar, NInputDimensions, NOutputDimensions >.

Definition at line 575 of file itkMatrixOffsetTransformBase.hxx.

virtual int itk::LightObject::GetReferenceCount ( ) const
inlinevirtualinherited

Gets the reference count on this object.

Definition at line 112 of file itkLightObject.h.

const TimeStamp & itk::Object::GetTimeStamp ( ) const
virtualinherited

Return this object's time stamp.

Return the modification for this object.

Reimplemented in itk::RealTimeClock.

Definition at line 293 of file itkObject.cxx.

Referenced by itk::RealTimeClock::GetTimeStamp().

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual TransformCategoryType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::GetTransformCategory ( ) const
inlinevirtual

Indicates the category transform. e.g. an affine transform, or a local one, e.g. a deformation field.

Reimplemented from itk::Transform< TScalar, NInputDimensions, NOutputDimensions >.

Definition at line 198 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
std::string itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::GetTransformTypeAsString ( ) const
virtualinherited

Generate a platform independent name

GenerateName

Implements itk::TransformBaseTemplate< TScalar >.

Definition at line 68 of file itkTransform.hxx.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
const OutputVectorType& itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::GetTranslation ( void  ) const
inline

Get translation component of the MatrixOffsetTransformBase

This method returns the translation used after rotation about the center point. To define an affine transform, you must set the matrix, center, and translation OR the matrix and offset

Definition at line 314 of file itkMatrixOffsetTransformBase.h.

Referenced by itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InternalInitializeTransform().

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
const InverseMatrixType& itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::GetVarInverseMatrix ( void  ) const
inlineprotected

Definition at line 465 of file itkMatrixOffsetTransformBase.h.

static void itk::Object::GlobalWarningDisplayOff ( )
inlinestaticinherited

Definition at line 118 of file itkObject.h.

Referenced by itk::OutputWindow::DisplayText().

static void itk::Object::GlobalWarningDisplayOn ( )
inlinestaticinherited

Definition at line 116 of file itkObject.h.

bool itk::Object::HasObserver ( const EventObject event) const
inherited

Return true if an observer is registered for this event.

Definition at line 472 of file itkObject.cxx.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
LightObject::Pointer itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::InternalClone ( ) const
protectedvirtualinherited
template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
bool itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::InverseMatrixIsOld ( void  ) const
inlineprotected

Definition at line 473 of file itkMatrixOffsetTransformBase.h.

void itk::Object::InvokeEvent ( const EventObject event)
inherited
void itk::Object::InvokeEvent ( const EventObject event) const
inherited

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

Definition at line 462 of file itkObject.cxx.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual bool itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::IsLinear ( ) const
inlinevirtual

Indicates that this transform is linear. That is, given two points P and Q, and scalar coefficients a and b, then

      T( a*P + b*Q ) = a * T(P) + b * T(Q)

Reimplemented from itk::Transform< TScalar, NInputDimensions, NOutputDimensions >.

Reimplemented in itk::ScaleTransform< TScalar, NDimensions >.

Definition at line 431 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::itkCloneMacro ( Self  )
inherited

define the Clone method

void itk::Object::Modified ( void  ) const
virtualinherited

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Make sure this object's modified time is greater than all others.

Reimplemented in otb::SVMModel< TValue, TLabel >, itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexConjugatePixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, otb::SurfaceAdjacencyEffect6SCorrectionSchemeFilter< TInputImage, TOutputImage >, otb::GenericRSTransform< TScalarType, NInputDimensions, NOutputDimensions >, itk::GPUImage< TPixel, VImageDimension >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, TBufferConverter >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, MeanShift::VectorBufferConverter >, otb::GCPsToRPCSensorModelImageFilter< TImage >, otb::Polygon< TValue >, otb::ImageRegionAdaptativeSplitter< VImageDimension >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, otb::GenericInterpolateImageFunction< TInputImage, TFunction, TBoundaryCondition, TCoordRep >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, otb::PolyLineParametricPathWithValue< TValue, VDimension >, otb::PolyLineParametricPathWithValue< TValue, 2 >, otb::PhysicalToRPCSensorModelImageFilter< TImage >, itk::NormalizeImageFilter< TInputImage, TOutputImage >, and otb::StatisticsXMLFileReader< TMeasurementVector >.

Definition at line 312 of file itkObject.cxx.

Referenced by itk::AttributeSelectionLabelMapFilter< TImage, Functor::LabelLabelObjectAccessor< TImage::LabelObjectType > >::AddAttribute(), itk::Function::ConvergenceMonitoringFunction< TScalar, TScalar >::AddEnergyValue(), otb::Wrapper::InputVectorDataListParameter::AddFromFileName(), otb::Wrapper::InputImageListParameter::AddFromFileName(), otb::Wrapper::InputFilenameListParameter::AddFromFileName(), otb::Wrapper::InputImageListParameter::AddImage(), otb::Wrapper::InputVectorDataListParameter::AddNullElement(), otb::Wrapper::InputImageListParameter::AddNullElement(), otb::Wrapper::InputFilenameListParameter::AddNullElement(), otb::Wrapper::StringListParameter::AddNullElement(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::AddSeed(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::AddSpecifiedRegion(), otb::Wrapper::InputVectorDataListParameter::AddVectorData(), itk::PolyLineParametricPath< VDimension >::AddVertex(), itk::ChainCodePath< 2 >::ChangeStep(), itk::ChainCodePath2D::ChangeStep(), itk::FourierSeriesPath< VDimension >::Clear(), itk::HilbertPath< TIndexValue, VDimension >::Clear(), itk::ChainCodePath< 2 >::Clear(), itk::ChainCodePath2D::Clear(), itk::AttributeSelectionLabelMapFilter< TImage, Functor::LabelLabelObjectAccessor< TImage::LabelObjectType > >::ClearAttributeSet(), itk::Function::ConvergenceMonitoringFunction< TScalar, TScalar >::ClearEnergyValues(), itk::MultiTransform< TScalar, NDimensions >::ClearTransformQueue(), otb::Wrapper::InputFilenameListParameter::ClearValue(), otb::Wrapper::InputImageListParameter::ClearValue(), otb::Wrapper::InputVectorDataListParameter::ClearValue(), otb::Wrapper::InputFilenameListParameter::Erase(), otb::Wrapper::InputImageListParameter::Erase(), otb::Wrapper::InputVectorDataListParameter::Erase(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::InitializeSeedList(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::InitializeSpecifiedRegionList(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::InsertNarrowBandNode(), itk::ChainCodePath2D::InsertStep(), itk::ChainCodePath< 2 >::InsertStep(), otb::ogr::ImageReference< double >::Modified(), itk::MultiTransform< TScalar, NDimensions >::PopBackTransform(), itk::MultiTransform< TScalar, NDimensions >::PopFrontTransform(), itk::MultiTransform< TScalar, NDimensions >::PushBackTransform(), itk::MultiTransform< TScalar, NDimensions >::PushFrontTransform(), itk::Statistics::SubsamplerBase< TSample >::RequestMaximumNumberOfResults(), itk::AdaptImageFilter< TInputImage, TOutputImage, TAccessor >::SetAccessor(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetAdvectionScaling(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetAlivePoints(), itk::CompositeTransform< TScalar, NDimensions >::SetAllTransformsToOptimize(), itk::GaussianInterpolateImageFunction< TInputImage, TCoordRep >::SetAlpha(), itk::WeightedAddImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetAlpha(), itk::SigmoidImageFilter< TInputImage, TOutputImage >::SetAlpha(), itk::AttributeSelectionLabelMapFilter< TImage, Functor::LabelLabelObjectAccessor< TImage::LabelObjectType > >::SetAttributeSet(), itk::LevelSetVelocityNeighborhoodExtractor< TLevelSet, TAuxValue, VAuxDimension >::SetAuxImage(), itk::SigmoidImageFilter< TInputImage, TOutputImage >::SetBeta(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetBinaryMask(), otb::TileMapImageIO::SetCacheDirectory(), itk::MatrixOffsetTransformBase< TScalar, 3, 3 >::SetCenter(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::SetClosestPoint(), itk::ConstantPadImageFilter< TInputImage, TOutputImage >::SetConstant(), itk::DivideOrZeroOutImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetConstant(), itk::LBFGSBOptimizer::SetCostFunction(), itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetCovariance(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetCurvatureScaling(), itk::CurvesLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma(), itk::NarrowBandCurvesLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma(), itk::GeodesicActiveContourLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma(), itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma(), otb::ImageIOBase::SetDimensions(), itk::ImageIOBase::SetDimensions(), otb::ImageIOBase::SetDirection(), itk::ImageIOBase::SetDirection(), itk::ExtractImageFilter< TInputImage, TOutputImage >::SetDirectionCollapseToStrategy(), itk::ComposeDisplacementFieldsImageFilter< TInputImage, TOutputImage >::SetDisplacementField(), itk::InvertDisplacementFieldImageFilter< TInputImage, TOutputImage >::SetDisplacementField(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetEdgeWeight(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetEdgeWeight(), itk::watershed::Boundary< TScalar, TDimension >::SetFace(), itk::ExpNegativeImageFilter< TInputImage, TOutputImage >::SetFactor(), itk::FileListVideoIO::SetFileName(), itk::AnisotropicDiffusionImageFilter< TInputImage, TOutputImage >::SetFixedAverageGradientMagnitude(), itk::watershed::Boundary< TScalar, TDimension >::SetFlatHash(), itk::NaryFunctorImageFilter< TInputImage, TOutputImage, Functor::Maximum1< TInputImage::PixelType, TInputImage::PixelType > >::SetFunctor(), itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, Functor::ReciprocalHAlphaFunctor< TInputImage::PixelType, TOutputImage::PixelType > >::SetFunctor(), itk::HistogramToImageFilter< THistogram, TImage, Function::HistogramIntensityFunction< SizeValueType, TImage::PixelType > >::SetFunctor(), itk::TernaryFunctorImageFilter< TInputMultiSpectralImage, TInputMultiSpectralInterpImage, TInputPanchroImage, TOutputImage, TFunctor >::SetFunctor(), itk::ConnectedComponentFunctorImageFilter< TInputImage, TOutputImage, Functor::SimilarVectorsFunctor< TInputImage::ValueType >, TMaskImage >::SetFunctor(), itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, Functor::DivideOrZeroOut< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >::SetFunctor(), itk::ImageMomentsCalculator< TImage >::SetImage(), otb::Wrapper::InputImageListParameter::SetImageList(), itk::VectorIndexSelectionCastImageFilter< TInputImage, TOutputImage >::SetIndex(), itk::MatrixIndexSelectionImageFilter< TInputImage, TOutputImage >::SetIndices(), itk::TriangleMeshToBinaryImageFilter< TInputMesh, TOutputImage >::SetInfoImage(), itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::SetInitialBiasFieldCoefficients(), itk::AmoebaOptimizer::SetInitialSimplexDelta(), itk::HistogramAlgorithmBase< THistogram >::SetInputHistogram(), otb::HistogramStatisticsFunction< TInputHistogram, TOutput >::SetInputHistogram(), otb::ImageToGenericRSOutputParameters< TImage >::SetInputKeywordList(), itk::LabelVotingImageFilter< TInputImage, TOutputImage >::SetLabelForUndecidedPixels(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::SetLabelForUndecidedPixels(), itk::watershed::Segmenter< InputImageType >::SetLargestPossibleRegion(), itk::TemporalDataObject::SetLargestPossibleTemporalRegion(), otb::Wrapper::InputImageListParameter::SetListFromFileName(), otb::Wrapper::InputVectorDataListParameter::SetListFromFileName(), otb::Wrapper::InputFilenameListParameter::SetListFromFileName(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetLowerThreshold(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetLowerThreshold(), itk::MaskNegatedImageFilter< TInputImage, TMaskImage, TOutputImage >::SetMaskingValue(), itk::MaskImageFilter< TInputImage, TMaskImage, TOutputImage >::SetMaskingValue(), itk::MatrixOffsetTransformBase< TScalar, 3, 3 >::SetMatrix(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetMaximumCurvatureTimeStep(), itk::watershed::SegmentTable< TScalar >::SetMaximumDepth(), itk::DiscreteGaussianImageFilter< TInputImage, TOutputImage >::SetMaximumError(), itk::CannyEdgeDetectionImageFilter< ImageType, ImageType >::SetMaximumError(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::SetMaximumNumberOfIterations(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetMaximumPropagationTimeStep(), itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetMean(), itk::Statistics::MembershipFunctionBase< TMeasurementVector >::SetMeasurementVectorSize(), itk::Statistics::DistanceMetric< Array< double > >::SetMeasurementVectorSize(), itk::Statistics::Sample< ImageJointDomainTraits< TImage >::MeasurementVectorType >::SetMeasurementVectorSize(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::SetNarrowBandTotalRadius(), itk::OpenCVVideoIO::SetNextFrameToRead(), itk::VXLVideoIO::SetNextFrameToRead(), otb::Wrapper::InputImageListParameter::SetNthFileName(), otb::Wrapper::InputVectorDataListParameter::SetNthFileName(), otb::Wrapper::InputFilenameListParameter::SetNthFileName(), itk::CompositeTransform< TScalar, NDimensions >::SetNthTransformToOptimize(), otb::ImageIOBase::SetNumberOfDimensions(), itk::ImageIOBase::SetNumberOfDimensions(), itk::SparseFieldFourthOrderLevelSetImageFilter< TInputImage, TOutputImage >::SetNumberOfLayers(), itk::Statistics::UniformRandomSpatialNeighborSubsampler< TSample, TRegion >::SetNumberOfResultsRequested(), itk::FastMarchingReachedTargetNodesStoppingCriterion< TInput, TOutput >::SetNumberOfTargetsToBeReached(), itk::MatrixOffsetTransformBase< TScalar, 3, 3 >::SetOffset(), itk::NeighborhoodOperatorImageFunction< TInputImage, TOutput >::SetOperator(), itk::VectorNeighborhoodOperatorImageFilter< TInputImage, TOutputImage >::SetOperator(), itk::NeighborhoodOperatorImageFilter< TInputImage, TOutputImage, TOperatorValueType >::SetOperator(), otb::ImageIOBase::SetOrigin(), itk::ImageIOBase::SetOrigin(), itk::SigmoidImageFilter< TInputImage, TOutputImage >::SetOutputMaximum(), itk::SigmoidImageFilter< TInputImage, TOutputImage >::SetOutputMinimum(), otb::ImageToGenericRSOutputParameters< TImage >::SetOutputProjectionRef(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetOutsidePoints(), itk::MaskNegatedImageFilter< TInputImage, TMaskImage, TOutputImage >::SetOutsideValue(), itk::MaskImageFilter< TInputImage, TMaskImage, TOutputImage >::SetOutsideValue(), otb::MapProjectionAdapter::SetParameter(), itk::Statistics::ProbabilityDistribution::SetParameters(), itk::DisplacementFieldTransform< TScalar, NDimensions >::SetParameters(), itk::FFTWInverseFFTImageFilter< TInputImage, TOutputImage >::SetPlanRigor(), itk::FFTWHalfHermitianToRealInverseFFTImageFilter< TInputImage, TOutputImage >::SetPlanRigor(), itk::FFTWRealToHalfHermitianForwardFFTImageFilter< TInputImage, TOutputImage >::SetPlanRigor(), itk::FFTWForwardFFTImageFilter< TInputImage, TOutputImage >::SetPlanRigor(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::SetPriorProbabilities(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetPropagationScaling(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::ChangeInformationImageFilter< TInputImage >::SetReferenceImage(), itk::ImportImageFilter< TPixel, VImageDimension >::SetRegion(), itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::SetRegionOfInterest(), itk::ScaleTransform< TScalar, NDimensions >::SetScale(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints1(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints2(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSegmentationFunction(), itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetShapePriorScaling(), itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetShrinkFactorsPerDimension(), itk::GaussianInterpolateImageFunction< TInputImage, TCoordRep >::SetSigma(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingConductance(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingConductance(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingIterations(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingIterations(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingTimeStep(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingTimeStep(), itk::PowellOptimizer::SetSpaceDimension(), otb::ImageIOBase::SetSpacing(), itk::ImageIOBase::SetSpacing(), itk::SpatialObject< TMesh::PointDimension >::SetSpacing(), itk::ImageMomentsCalculator< TImage >::SetSpatialObjectMask(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetSpeedConstant(), itk::FastMarchingReachedTargetNodesStoppingCriterion< TInput, TOutput >::SetTargetCondition(), itk::FastMarchingReachedTargetNodesStoppingCriterion< TInput, TOutput >::SetTargetNodes(), itk::FastMarchingUpwindGradientImageFilter< TLevelSet, TSpeedImage >::SetTargetPoints(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::SetTerminationUpdateThreshold(), itk::DivideOrZeroOutImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetThreshold(), itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetThreshold(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::MatrixOffsetTransformBase< TScalar, 3, 3 >::SetTranslation(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetTrialPoints(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUpperThreshold(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUpperThreshold(), itk::Statistics::UniformRandomSpatialNeighborSubsampler< TSample, TRegion >::SetUseClockForSeed(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUseMinimalCurvature(), itk::watershed::Boundary< TScalar, TDimension >::SetValid(), otb::Wrapper::OutputProcessXMLParameter::SetValue(), otb::Wrapper::InputProcessXMLParameter::SetValue(), otb::Wrapper::OutputFilenameParameter::SetValue(), otb::Wrapper::InputFilenameParameter::SetValue(), otb::Wrapper::ListViewParameter::SetValue(), otb::Wrapper::ChoiceParameter::SetValue(), itk::DiscreteGaussianImageFilter< TInputImage, TOutputImage >::SetVariance(), itk::CannyEdgeDetectionImageFilter< ImageType, ImageType >::SetVariance(), otb::Wrapper::InputVectorDataListParameter::SetVectorDataList(), otb::MapProjectionAdapter::SetWkt(), itk::LabelVotingImageFilter< TInputImage, TOutputImage >::UnsetLabelForUndecidedPixels(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::UnsetLabelForUndecidedPixels(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::UnsetMaximumNumberOfIterations(), and itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::UnsetPriorProbabilities().

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
static Pointer itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::New ( )
static

New macro for creation of through a Smart Pointer

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
const Self& itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::operator= ( const Self )
private
template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
Transform< TScalar, NInputDimensions, NOutputDimensions >::OutputDiffusionTensor3DType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::PreservationOfPrincipalDirectionDiffusionTensor3DReorientation ( const InputDiffusionTensor3DType  inputTensor,
const JacobianType  jacobian 
) const
protectedinherited
void itk::LightObject::Print ( std::ostream &  os,
Indent  indent = 0 
) const
inherited

Cause the object to print itself out.

Avoid DLL boundary problems. This function will be common to all itk objects. It just calls the header/self/trailer virtual print methods, which can be overriden by subclasses (any itk object).

Definition at line 137 of file itkLightObject.cxx.

References itk::Indent::GetNextIndent().

Referenced by itk::operator<<(), and itk::VideoStream< TFrameType >::PrintSelf().

void itk::LightObject::PrintHeader ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Define a default print header for all objects.

Definition at line 315 of file itkLightObject.cxx.

bool itk::Object::PrintObservers ( std::ostream &  os,
Indent  indent 
) const
protectedinherited

Definition at line 483 of file itkObject.cxx.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::PrintSelf ( std::ostream &  s,
Indent  indent 
) const
protectedvirtual

Print contents of an MatrixOffsetTransformBase

Reimplemented from itk::Object.

Definition at line 96 of file itkMatrixOffsetTransformBase.hxx.

References itk::Indent::GetNextIndent().

void itk::LightObject::PrintTrailer ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Define a default print trailer for all objects.

Definition at line 325 of file itkLightObject.cxx.

void itk::Object::Register ( ) const
virtualinherited

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

Definition at line 323 of file itkObject.cxx.

Referenced by itk::ObjectFactoryBase::RegisterFactory(), and itk::ObjectFactoryBase::RegisterFactoryInternal().

void itk::Object::RemoveAllObservers ( )
inherited

Remove all observers .

Definition at line 442 of file itkObject.cxx.

void itk::Object::RemoveObserver ( unsigned long  tag)
inherited

Remove the observer with this tag value.

Definition at line 432 of file itkObject.cxx.

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), and otb::ImageFileWriter< TInputImage >::Update().

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::SetCenter ( const InputPointType center)
inline

Set center of rotation of an MatrixOffsetTransformBase

This method sets the center of rotation of an MatrixOffsetTransformBase to a fixed point - for most transforms derived from this class, this point is not a "parameter" of the transform - the exception is that "centered" transforms have center as a parameter during optimization.

This method updates offset wrt to current translation and matrix. That is, changing the center changes the transform!

WARNING: When using the Center, we strongly recommend only changing the matrix and translation to define a transform. Changing a transform's center, changes the mapping between spaces - specifically, translation is not changed with respect to that new center, and so the offset is updated to * maintain the consistency with translation. If a center is not used, or is set before the matrix and the offset, then it is safe to change the offset directly. As a rule of thumb, if you wish to set the center explicitly, set before Offset computations are done.

To define an affine transform, you must set the matrix, center, and translation OR the matrix and offset

Definition at line 279 of file itkMatrixOffsetTransformBase.h.

Referenced by itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InternalInitializeTransform(), and itk::MetaSceneConverter< NDimensions, PixelType, TMeshTraits >::SetTransform().

void itk::Object::SetDebug ( bool  debugFlag) const
inherited

Set the value of the debug flag. A non-zero value turns debugging on.

Definition at line 273 of file itkObject.cxx.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::SetFixedParameters ( const ParametersType fp)
virtual
template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual void itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::SetFixedParameters ( const ParametersType )
pure virtualinherited
void itk::Object::SetGlobalWarningDisplay ( bool  val)
staticinherited

This is a global flag that controls whether any debug, warning or error messages are displayed.

Set the value of the global debug output control flag.

Definition at line 381 of file itkObject.cxx.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::SetIdentity ( void  )
virtual
template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::SetMatrix ( const MatrixType matrix)
inlinevirtual

Set matrix of an MatrixOffsetTransformBase

This method sets the matrix of an MatrixOffsetTransformBase to a value specified by the user.

This updates the Offset wrt to current translation and center. See the warning regarding offset-versus-translation in the documentation for SetCenter.

To define an affine transform, you must set the matrix, center, and translation OR the matrix and offset

Definition at line 214 of file itkMatrixOffsetTransformBase.h.

Referenced by itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InternalInitializeTransform(), and itk::MetaSceneConverter< NDimensions, PixelType, TMeshTraits >::SetTransform().

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary rhs)
inherited
virtual void itk::Object::SetObjectName ( std::string  _arg)
virtualinherited

A facility to help application programmers set a human identifiable name for a given object. This has no inherent use in ITK, but is a convenience to allow developers to provide a name for this object.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::SetOffset ( const OutputVectorType offset)
inline

Set offset (origin) of an MatrixOffset TransformBase.

This method sets the offset of an MatrixOffsetTransformBase to a value specified by the user. This updates Translation wrt current center. See the warning regarding offset-versus-translation in the documentation for SetCenter. To define an affine transform, you must set the matrix, center, and translation OR the matrix and offset

Definition at line 241 of file itkMatrixOffsetTransformBase.h.

Referenced by itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InternalInitializeTransform(), and itk::MetaSceneConverter< NDimensions, PixelType, TMeshTraits >::SetTransform().

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::SetParameters ( const ParametersType parameters)
virtual

Set the transformation from a container of parameters. The first (NOutputDimension x NInputDimension) parameters define the matrix and the last NOutputDimension parameters the translation. Offset is updated based on current center.

Implements itk::TransformBaseTemplate< TScalar >.

Definition at line 602 of file itkMatrixOffsetTransformBase.hxx.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual void itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::SetParameters ( const ParametersType )
pure virtualinherited

Set the transformation parameters and update internal transformation. SetParameters gives the transform the option to set it's parameters by keeping a reference to the parameters, or by copying. To force the transform to copy it's parameters call SetParametersByValue.

See Also
SetParametersByValue

Implemented in itk::MatrixOffsetTransformBase< TScalar, NDimensions, NDimensions >, itk::MatrixOffsetTransformBase< TScalar, 2, 2 >, itk::MatrixOffsetTransformBase< TScalar, 3, 3 >, itk::DisplacementFieldTransform< TScalar, NDimensions >, itk::MultiTransform< TScalar, NDimensions >, itk::Rigid2DTransform< TScalar >, itk::Similarity2DTransform< TScalar >, itk::CenteredSimilarity2DTransform< TScalar >, otb::Transform< TScalarType, NInputDimensions, NOutputDimensions >, itk::CenteredRigid2DTransform< TScalar >, otb::Transform< double, 2, 2 >, otb::Transform< TScalarType, NInputDimensions, NOutputDimensions >, otb::Transform< TScalarType, 2, 2 >, otb::Transform< TScalarType, Dimension, Dimension >, itk::Rigid3DTransform< TScalar >, itk::QuaternionRigidTransform< TScalar >, itk::ScaleSkewVersor3DTransform< TScalar >, itk::TranslationTransform< TScalar, NDimensions >, itk::Similarity3DTransform< TScalar >, itk::ScaleTransform< TScalar, NDimensions >, itk::VersorTransform< TScalar >, itk::ScaleVersor3DTransform< TScalar >, itk::VersorRigid3DTransform< TScalar >, itk::CenteredAffineTransform< TScalar, NDimensions >, itk::CenteredEuler3DTransform< TScalar >, itk::Euler3DTransform< TScalar >, itk::ScaleLogarithmicTransform< TScalar, NDimensions >, otb::LogPolarTransform< TScalarType >, and otb::InverseLogPolarTransform< TScalarType >.

Referenced by itk::Transform< TScalar, NDimensions, NDimensions >::SetParametersByValue().

template<typename TScalar>
virtual void itk::TransformBaseTemplate< TScalar >::SetParametersByValue ( const ParametersType p)
pure virtualinherited

Set the transformation by copying parameters and update internal transformation. This method forces the transform to copy the parameters. The default implementation is to call SetParameters. This call must be overridden if the transform normally implements SetParameters by keeping a reference to the parameters.

See Also
SetParameters

Implemented in itk::Transform< TScalar, 3, 2 >, and itk::Transform< TScalar, NDimensions, NDimensions >.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual void itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::SetParametersByValue ( const ParametersType p)
inlinevirtualinherited

Set the transformation parameters and update internal transformation. This method forces the transform to copy the parameters. The default implementation is to call SetParameters. This call must be overridden if the transform normally implements SetParameters by keeping a reference to the parameters.

See Also
SetParameters

Reimplemented in otb::Transform< TScalarType, NInputDimensions, NOutputDimensions >, otb::Transform< double, 2, 2 >, otb::Transform< TScalarType, NInputDimensions, NOutputDimensions >, otb::Transform< TScalarType, 2, 2 >, and otb::Transform< TScalarType, Dimension, Dimension >.

Definition at line 363 of file itkTransform.h.

void itk::Object::SetReferenceCount ( int  ref)
virtualinherited

Sets the reference count (use with care)

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 359 of file itkObject.cxx.

void itk::Object::SetTimeStamp ( const TimeStamp timeStamp)
protectedvirtualinherited

Set the time stamp of this object. This method must be used very carefully !!!. Most mortals will never need to call this method.

Set the time stamp of this object. To be used very carefully !!!. Most mortals will never need to call this method.

Definition at line 302 of file itkObject.cxx.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::SetTranslation ( const OutputVectorType translation)
inline

Set translation of an MatrixOffsetTransformBase

This method sets the translation of an MatrixOffsetTransformBase. This updates Offset to reflect current translation. To define an affine transform, you must set the matrix, center, and translation OR the matrix and offset

Definition at line 302 of file itkMatrixOffsetTransformBase.h.

Referenced by itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InternalInitializeTransform().

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::SetVarCenter ( const InputPointType center)
inlineprotected

Definition at line 508 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::SetVarInverseMatrix ( const InverseMatrixType matrix) const
inlineprotected

Definition at line 469 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::SetVarMatrix ( const MatrixType matrix)
inlineprotected

Definition at line 489 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::SetVarOffset ( const OutputVectorType offset)
inlineprotected

Definition at line 503 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
void itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::SetVarTranslation ( const OutputVectorType translation)
inlineprotected

Definition at line 496 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual OutputCovariantVectorType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformCovariantVector ( const InputCovariantVectorType ) const
inlinevirtualinherited
template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
Transform< TScalar, NInputDimensions, NOutputDimensions >::OutputCovariantVectorType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformCovariantVector ( const InputCovariantVectorType vector,
const InputPointType point 
) const
virtualinherited

Method to transform a CovariantVector, using a point. Global transforms can ignore the point parameter. Local transforms (e.g. deformation field transform) must override and provide required behavior. By default, point is ignored and TransformCovariantVector(vector) is called

Transform covariant vector

Definition at line 256 of file itkTransform.hxx.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual OutputVectorPixelType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformCovariantVector ( const InputVectorPixelType ) const
inlinevirtualinherited
template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
Transform< TScalar, NInputDimensions, NOutputDimensions >::OutputVectorPixelType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformCovariantVector ( const InputVectorPixelType vector,
const InputPointType point 
) const
virtualinherited

Method to transform a CovariantVector, using a point. Global transforms can ignore the point parameter. Local transforms (e.g. deformation field transform) must override and provide required behavior. By default, point is ignored and TransformCovariantVector(vector) is called

Transform covariant vector

Definition at line 281 of file itkTransform.hxx.

References itk::VariableLengthVector< TValueType >::GetSize(), and itk::VariableLengthVector< TValueType >::SetSize().

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputCovariantVectorType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::TransformCovariantVector ( const InputCovariantVectorType vector) const

Definition at line 256 of file itkMatrixOffsetTransformBase.hxx.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputVectorPixelType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::TransformCovariantVector ( const InputVectorPixelType vector) const
template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual OutputDiffusionTensor3DType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformDiffusionTensor3D ( const InputDiffusionTensor3DType ) const
inlinevirtualinherited
template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
Transform< TScalar, NInputDimensions, NOutputDimensions >::OutputDiffusionTensor3DType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformDiffusionTensor3D ( const InputDiffusionTensor3DType inputTensor,
const InputPointType point 
) const
virtualinherited

Method to transform a diffusion tensor at a point. Global transforms can ignore the point parameter. Local transforms (e.g. deformation field transform) must override and provide required behavior. By default, point is ignored and TransformDiffusionTensor(tensor) is called

Transform tensor

Definition at line 313 of file itkTransform.hxx.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual OutputVectorPixelType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformDiffusionTensor3D ( const InputVectorPixelType ) const
inlinevirtualinherited
template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
Transform< TScalar, NInputDimensions, NOutputDimensions >::OutputVectorPixelType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformDiffusionTensor3D ( const InputVectorPixelType inputTensor,
const InputPointType point 
) const
virtualinherited
template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputDiffusionTensor3DType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::TransformDiffusionTensor3D ( const InputDiffusionTensor3DType tensor) const

Definition at line 320 of file itkMatrixOffsetTransformBase.hxx.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputVectorPixelType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::TransformDiffusionTensor3D ( const InputVectorPixelType tensor) const
template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual OutputPointType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformPoint ( const InputPointType ) const
pure virtualinherited
template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputPointType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::TransformPoint ( const InputPointType point) const

Transform by an affine transformation

This method applies the affine transform given by self to a given point or vector, returning the transformed point or vector. The TransformPoint method transforms its argument as an affine point, whereas the TransformVector method transforms its argument as a vector.

Definition at line 180 of file itkMatrixOffsetTransformBase.hxx.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
Transform< TScalar, NInputDimensions, NOutputDimensions >::OutputSymmetricSecondRankTensorType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformSymmetricSecondRankTensor ( const InputSymmetricSecondRankTensorType inputTensor,
const InputPointType point 
) const
virtualinherited

Method to transform a diffusion tensor at a point. Global transforms can ignore the point parameter. Local transforms (e.g. deformation field transform) must override and provide required behavior. By default, point is ignored and TransformSymmetricSecondRankTensor(tensor) is called

Transform tensor

Definition at line 454 of file itkTransform.hxx.

References itk::Array2D< TValueType >::SetSize().

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual OutputSymmetricSecondRankTensorType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformSymmetricSecondRankTensor ( const InputSymmetricSecondRankTensorType ) const
inlinevirtualinherited
template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual OutputVectorPixelType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformSymmetricSecondRankTensor ( const InputVectorPixelType ) const
inlinevirtualinherited
template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
Transform< TScalar, NInputDimensions, NOutputDimensions >::OutputVectorPixelType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformSymmetricSecondRankTensor ( const InputVectorPixelType inputTensor,
const InputPointType point 
) const
virtualinherited

Method to transform a diffusion tensor stored in a VectorImage, at a point. Global transforms can ignore the point parameter. Local transforms (e.g. deformation field transform) must override and provide required behavior. By default, point is ignored and TransformDiffusionTensor(tensor) is called

Transform tensor

Definition at line 492 of file itkTransform.hxx.

References itk::VariableLengthVector< TValueType >::GetSize(), itk::Array2D< TValueType >::SetSize(), and itk::VariableLengthVector< TValueType >::SetSize().

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputSymmetricSecondRankTensorType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::TransformSymmetricSecondRankTensor ( const InputSymmetricSecondRankTensorType inputTensor) const

Transform tensor

Definition at line 376 of file itkMatrixOffsetTransformBase.hxx.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputVectorPixelType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::TransformSymmetricSecondRankTensor ( const InputVectorPixelType inputTensor) const

Transform tensor

Definition at line 425 of file itkMatrixOffsetTransformBase.hxx.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual OutputVectorType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVectorType ) const
inlinevirtualinherited
template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
Transform< TScalar, NInputDimensions, NOutputDimensions >::OutputVectorType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVectorType vector,
const InputPointType point 
) const
virtualinherited

Method to transform a vector at a given location. For global transforms, point is ignored and TransformVector( vector ) is called. Local transforms (e.g. deformation field transform) must override and provide required behavior.

Transform vector

Definition at line 172 of file itkTransform.hxx.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual OutputVnlVectorType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVnlVectorType ) const
inlinevirtualinherited
template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
Transform< TScalar, NInputDimensions, NOutputDimensions >::OutputVnlVectorType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVnlVectorType vector,
const InputPointType point 
) const
virtualinherited

Method to transform a vnl_vector, at a point. For global transforms, point is ignored and TransformVector( vector ) is called. Local transforms (e.g. deformation field transform) must override and provide required behavior.

Transform vector

Definition at line 197 of file itkTransform.hxx.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
virtual OutputVectorPixelType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVectorPixelType ) const
inlinevirtualinherited
template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
Transform< TScalar, NInputDimensions, NOutputDimensions >::OutputVectorPixelType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVectorPixelType vector,
const InputPointType point 
) const
virtualinherited

Method to transform a vector stored in a VectorImage, at a point. For global transforms, point is ignored and TransformVector( vector ) is called. Local transforms (e.g. deformation field transform) must override and provide required behavior.

Transform vector

Definition at line 222 of file itkTransform.hxx.

References itk::VariableLengthVector< TValueType >::GetSize(), and itk::VariableLengthVector< TValueType >::SetSize().

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputVectorType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVectorType vector) const

Definition at line 192 of file itkMatrixOffsetTransformBase.hxx.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputVnlVectorType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVnlVectorType vector) const

Definition at line 204 of file itkMatrixOffsetTransformBase.hxx.

template<typename TScalar , unsigned int NInputDimensions, unsigned int NOutputDimensions>
MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputVectorPixelType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::TransformVector ( const InputVectorPixelType vector) const
void itk::Object::UnRegister ( ) const
virtualinherited

Decrease the reference count (release by another object).

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 337 of file itkObject.cxx.

Referenced by itk::ObjectFactoryBase::DeleteNonInternalFactory(), and itk::Object::New().

template<typename TScalar, unsigned int NInputDimensions, unsigned int NOutputDimensions>
void itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::UpdateTransformParameters ( const DerivativeType update,
TScalar  factor = 1.0 
)
virtualinherited

Update the transform's parameters by the values in update.

Parameters
updatemust be of the same length as returned by GetNumberOfParameters(). Throw an exception otherwise.
factoris a scalar multiplier for each value in update. SetParameters is called at the end of this method, to allow the transform to perform any required operations on the updated parameters - typically a conversion to member variables for use in TransformPoint.

UpdateTransformParameters

Definition at line 114 of file itkTransform.hxx.

References itk::Array< TValueType >::Size().

Referenced by itk::MultiTransform< TScalar, NDimensions, NSubDimensions >::UpdateTransformParameters().

Member Data Documentation

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
const unsigned int itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::InputSpaceDimension = NInputDimensions
static

Dimension of the domain space.

Definition at line 96 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
InputPointType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::m_Center
private
template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
DirectionChangeMatrix itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::m_DirectionChange
mutableprotectedinherited

Definition at line 564 of file itkTransform.h.

template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
ParametersType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::m_FixedParameters
mutableprotectedinherited
template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
InverseMatrixType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::m_InverseMatrix
mutableprivate
template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
TimeStamp itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::m_InverseMatrixMTime
mutableprivate
template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
MatrixType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::m_Matrix
private
template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
TimeStamp itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::m_MatrixMTime
private
template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
OutputVectorType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::m_Offset
private
template<typename TScalar, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
ParametersType itk::Transform< TScalar, NInputDimensions, NOutputDimensions >::m_Parameters
mutableprotectedinherited
InternalReferenceCountType itk::LightObject::m_ReferenceCount
mutableprotectedinherited

Number of uses of this object by other objects.

Definition at line 156 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock
mutableprotectedinherited

Mutex lock to protect modification to the reference count

Definition at line 159 of file itkLightObject.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
bool itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::m_Singular
mutableprivate

Definition at line 521 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
OutputVectorType itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::m_Translation
private
template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
const unsigned int itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::OutputSpaceDimension = NOutputDimensions
static

Definition at line 97 of file itkMatrixOffsetTransformBase.h.

template<typename TScalar = double, unsigned int NInputDimensions = 3, unsigned int NOutputDimensions = 3>
const unsigned int itk::MatrixOffsetTransformBase< TScalar, NInputDimensions, NOutputDimensions >::ParametersDimension = NOutputDimensions * ( NInputDimensions + 1 )
static

Definition at line 99 of file itkMatrixOffsetTransformBase.h.


The documentation for this class was generated from the following files:

Generated at Sat Mar 8 2014 17:23:21 for Orfeo Toolbox with doxygen 1.8.3.1