Orfeo Toolbox  4.0
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Types | Protected Member Functions | Protected Attributes | Private Attributes | List of all members
itk::bio::CellularAggregate< NSpaceDimension > Class Template Reference

Base class for different types of cellular groups, including bacterial colonies and pluricellular organisms. More...

#include <itkBioCellularAggregate.h>

+ Inheritance diagram for itk::bio::CellularAggregate< NSpaceDimension >:
+ Collaboration diagram for itk::bio::CellularAggregate< NSpaceDimension >:

Public Types

typedef Cell< NSpaceDimension > BioCellType
 
typedef MeshType::CellAutoPointer CellAutoPointer
 
typedef CellInterface
< typename
MeshType::CellPixelType,
typename MeshType::CellTraits
CellInterfaceType
 
typedef double CellPixelType
 
typedef
PointDataContainer::ConstIterator 
CellsConstIterator
 
typedef
PointDataContainer::Iterator 
CellsIterator
 
typedef SmartPointer< const SelfConstPointer
 
typedef float ImagePixelType
 
typedef MeshType::ConstPointer MeshConstPointer
 
typedef MeshType::Pointer MeshPointer
 
typedef
DefaultDynamicMeshTraits
< PointPixelType,
NSpaceDimension,
NSpaceDimension, double,
double, CellPixelType
MeshTraits
 
typedef Mesh< PointPixelType,
NSpaceDimension, MeshTraits
MeshType
 
typedef
MeshType::PointDataContainer 
PointDataContainer
 
typedef SmartPointer< SelfPointer
 
typedef BioCellTypePointPixelType
 
typedef
PointsContainer::ConstIterator 
PointsConstIterator
 
typedef MeshType::PointsContainer PointsContainer
 
typedef PointsContainer::Iterator PointsIterator
 
typedef MeshType::PointType PointType
 
typedef CellularAggregate Self
 
typedef SubstrateType::Pointer SubstratePointer
 
typedef std::vector
< SubstratePointer
SubstratesVector
 
typedef Image< ImagePixelType,
NSpaceDimension > 
SubstrateType
 
typedef ImagePixelType SubstrateValueType
 
typedef CellularAggregateBase Superclass
 
typedef BioCellType::VectorType VectorType
 
typedef
VoronoiRegionsContainer::ConstIterator 
VoronoiConstIterator
 
typedef
VoronoiRegionsContainer::Iterator 
VoronoiIterator
 
typedef
VoronoiRegionType::SelfAutoPointer 
VoronoiRegionAutoPointer
 
typedef MeshType::CellsContainer VoronoiRegionsContainer
 
typedef PolygonCell
< CellInterfaceType
VoronoiRegionType
 

Public Member Functions

virtual void Add (CellBase *cell)
 
virtual void Add (CellBase *cell, const VectorType &perturbation)
 
virtual void Add (CellBase *cellA, CellBase *cellB, double perturbationLength)
 
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void AddSubstrate (SubstrateType *substrate)
 
virtual void AdvanceTimeStep (void)
 
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
virtual void Delete ()
 
void DumpContent (std::ostream &os) const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary (void)
 
const MetaDataDictionaryGetMetaDataDictionary (void) const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const char * GetNameOfClass () const
 
unsigned int GetNumberOfCells (void) const
 
virtual const std::string & GetObjectName ()
 
virtual int GetReferenceCount () const
 
virtual SubstratesVectorGetSubstrates (void)
 
virtual SubstrateValueType GetSubstrateValue (IdentifierType cellId, unsigned int substrateId) const
 
virtual const TimeStampGetTimeStamp () const
 
virtual void GetVoronoi (IdentifierType cellId, VoronoiRegionAutoPointer &) const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
 itkCloneMacro (Self)
 
 itkGetModifiableObjectMacro (Mesh, MeshType)
 
virtual void KillAll (void)
 
virtual void Modified () const
 
void Print (std::ostream &os, Indent indent=0) const
 
virtual void Register () const
 
virtual void Remove (CellBase *cell)
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
virtual void SetEgg (BioCellType *cell, const PointType &position)
 
void SetGrowthRadiusIncrement (double value)
 
void SetGrowthRadiusLimit (double value)
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetObjectName (std::string _arg)
 
virtual void SetReferenceCount (int)
 
virtual void UnRegister () const
 

Static Public Member Functions

static void BreakOnError ()
 
static unsigned int GetDimension ()
 
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 

Static Public Attributes

static const unsigned int SpaceDimension = NSpaceDimension
 

Protected Types

typedef int InternalReferenceCountType
 

Protected Member Functions

 CellularAggregate ()
 
 CellularAggregate (const Self &)
 
virtual ~CellularAggregate ()
 
virtual void ClearForces (void)
 
virtual void ComputeClosestPoints (void)
 
virtual void ComputeForces (void)
 
virtual LightObject::Pointer InternalClone () const
 
void operator= (const Self &)
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
void PrintSelf (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual void UpdatePositions (void)
 

Protected Attributes

InternalReferenceCountType m_ReferenceCount
 
SimpleFastMutexLock m_ReferenceCountLock
 

Private Attributes

SizeValueType m_ClosestPointComputationInterval
 
double m_FrictionForce
 
SizeValueType m_Iteration
 
MeshPointer m_Mesh
 
SubstratesVector m_Substrates
 

Detailed Description

template<unsigned int NSpaceDimension = 3>
class itk::bio::CellularAggregate< NSpaceDimension >

Base class for different types of cellular groups, including bacterial colonies and pluricellular organisms.

This class represents an aggregation of bio::Cell objects.

Definition at line 43 of file itkBioCellularAggregate.h.

Member Typedef Documentation

template<unsigned int NSpaceDimension = 3>
typedef Cell< NSpaceDimension > itk::bio::CellularAggregate< NSpaceDimension >::BioCellType

Definition at line 61 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef MeshType::CellAutoPointer itk::bio::CellularAggregate< NSpaceDimension >::CellAutoPointer

Definition at line 95 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef CellInterface< typename MeshType::CellPixelType, typename MeshType::CellTraits > itk::bio::CellularAggregate< NSpaceDimension >::CellInterfaceType

Voronoi region around a bio::Cell

Definition at line 100 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef double itk::bio::CellularAggregate< NSpaceDimension >::CellPixelType

Definition at line 63 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef PointDataContainer::ConstIterator itk::bio::CellularAggregate< NSpaceDimension >::CellsConstIterator

Definition at line 93 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef PointDataContainer::Iterator itk::bio::CellularAggregate< NSpaceDimension >::CellsIterator

Definition at line 90 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef SmartPointer< const Self > itk::bio::CellularAggregate< NSpaceDimension >::ConstPointer

Definition at line 50 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef float itk::bio::CellularAggregate< NSpaceDimension >::ImagePixelType

Convenient typedefs.

Definition at line 106 of file itkBioCellularAggregate.h.

typedef int itk::LightObject::InternalReferenceCountType
protectedinherited

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 152 of file itkLightObject.h.

template<unsigned int NSpaceDimension = 3>
typedef MeshType::ConstPointer itk::bio::CellularAggregate< NSpaceDimension >::MeshConstPointer

Definition at line 82 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef MeshType::Pointer itk::bio::CellularAggregate< NSpaceDimension >::MeshPointer

Mesh Associated types

Definition at line 81 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef DefaultDynamicMeshTraits< PointPixelType, NSpaceDimension, NSpaceDimension, double, double, CellPixelType > itk::bio::CellularAggregate< NSpaceDimension >::MeshTraits

Mesh Traits

Definition at line 73 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef Mesh< PointPixelType, NSpaceDimension, MeshTraits > itk::bio::CellularAggregate< NSpaceDimension >::MeshType

Mesh Traits

Definition at line 78 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef MeshType::PointDataContainer itk::bio::CellularAggregate< NSpaceDimension >::PointDataContainer

Definition at line 87 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef SmartPointer< Self > itk::bio::CellularAggregate< NSpaceDimension >::Pointer

Definition at line 49 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef BioCellType* itk::bio::CellularAggregate< NSpaceDimension >::PointPixelType

Definition at line 62 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef PointsContainer::ConstIterator itk::bio::CellularAggregate< NSpaceDimension >::PointsConstIterator

Definition at line 92 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef MeshType::PointsContainer itk::bio::CellularAggregate< NSpaceDimension >::PointsContainer

Definition at line 86 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef PointsContainer::Iterator itk::bio::CellularAggregate< NSpaceDimension >::PointsIterator

Definition at line 89 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef MeshType::PointType itk::bio::CellularAggregate< NSpaceDimension >::PointType

Definition at line 83 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef CellularAggregate itk::bio::CellularAggregate< NSpaceDimension >::Self

Standard class typedefs.

Definition at line 47 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef SubstrateType::Pointer itk::bio::CellularAggregate< NSpaceDimension >::SubstratePointer

Definition at line 108 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef std::vector< SubstratePointer > itk::bio::CellularAggregate< NSpaceDimension >::SubstratesVector

Definition at line 110 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef Image< ImagePixelType, NSpaceDimension > itk::bio::CellularAggregate< NSpaceDimension >::SubstrateType

Definition at line 107 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef ImagePixelType itk::bio::CellularAggregate< NSpaceDimension >::SubstrateValueType

Definition at line 109 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef CellularAggregateBase itk::bio::CellularAggregate< NSpaceDimension >::Superclass

Definition at line 48 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef BioCellType::VectorType itk::bio::CellularAggregate< NSpaceDimension >::VectorType

Definition at line 84 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef VoronoiRegionsContainer::ConstIterator itk::bio::CellularAggregate< NSpaceDimension >::VoronoiConstIterator

Definition at line 94 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef VoronoiRegionsContainer::Iterator itk::bio::CellularAggregate< NSpaceDimension >::VoronoiIterator

Definition at line 91 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef VoronoiRegionType::SelfAutoPointer itk::bio::CellularAggregate< NSpaceDimension >::VoronoiRegionAutoPointer

Definition at line 103 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef MeshType::CellsContainer itk::bio::CellularAggregate< NSpaceDimension >::VoronoiRegionsContainer

Definition at line 88 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
typedef PolygonCell< CellInterfaceType > itk::bio::CellularAggregate< NSpaceDimension >::VoronoiRegionType

Definition at line 102 of file itkBioCellularAggregate.h.

Constructor & Destructor Documentation

template<unsigned int NSpaceDimension>
itk::bio::CellularAggregate< NSpaceDimension >::CellularAggregate ( )
protected
template<unsigned int NSpaceDimension>
itk::bio::CellularAggregate< NSpaceDimension >::~CellularAggregate ( )
protectedvirtual

Definition at line 52 of file itkBioCellularAggregate.hxx.

template<unsigned int NSpaceDimension = 3>
itk::bio::CellularAggregate< NSpaceDimension >::CellularAggregate ( const Self )
protected

Member Function Documentation

template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::Add ( CellBase cell)
virtual
template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::Add ( CellBase cell,
const VectorType perturbation 
)
virtual
template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::Add ( CellBase cellA,
CellBase cellB,
double  perturbationLength 
)
virtual

The actual implementation is provided in the derived classes where the Cell dimension is known.

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 217 of file itkBioCellularAggregate.hxx.

References itk::Math::e, itk::Vector< T, NVectorDimension >::GetNorm(), and itk::bio::CellBase::GetSelfIdentifier().

unsigned long itk::Object::AddObserver ( const EventObject event,
Command cmd 
)
inherited

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

Definition at line 398 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), itk::ProgressAccumulator::RegisterInternalFilter(), otb::ImageFileWriter< TInputImage >::Update(), and otb::WriterWatcherBase::WriterWatcherBase().

unsigned long itk::Object::AddObserver ( const EventObject event,
Command cmd 
) const
inherited

Definition at line 409 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::AddSubstrate ( SubstrateType substrate)
virtual

Definition at line 597 of file itkBioCellularAggregate.hxx.

template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::AdvanceTimeStep ( void  )
virtual
void itk::LightObject::BreakOnError ( )
staticinherited

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

Definition at line 150 of file itkLightObject.cxx.

template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::ClearForces ( void  )
protectedvirtual

Definition at line 383 of file itkBioCellularAggregate.hxx.

template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::ComputeClosestPoints ( void  )
protectedvirtual
template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::ComputeForces ( void  )
protectedvirtual
template<unsigned int NSpaceDimension = 3>
virtual::itk::LightObject::Pointer itk::bio::CellularAggregate< NSpaceDimension >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

void itk::Object::DebugOff ( ) const
virtualinherited

Turn debugging output off.

Definition at line 253 of file itkObject.cxx.

void itk::Object::DebugOn ( ) const
virtualinherited

Turn debugging output on.

Definition at line 243 of file itkObject.cxx.

void itk::LightObject::Delete ( )
virtualinherited

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

Delete a itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C++ delete method will not work with reference counting.

Definition at line 91 of file itkLightObject.cxx.

template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::DumpContent ( std::ostream &  os) const

Definition at line 548 of file itkBioCellularAggregate.hxx.

Command * itk::Object::GetCommand ( unsigned long  tag)
inherited

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to assign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

Definition at line 421 of file itkObject.cxx.

References itk::Object::GetCommand(), and NULL.

Referenced by itk::Object::GetCommand().

bool itk::Object::GetDebug ( ) const
inherited

Get the value of the debug flag.

Definition at line 263 of file itkObject.cxx.

Referenced by otb::ogr::ImageReference< double >::GetDebug().

template<unsigned int NSpaceDimension = 3>
static unsigned int itk::bio::CellularAggregate< NSpaceDimension >::GetDimension ( void  )
inlinestatic
bool itk::Object::GetGlobalWarningDisplay ( )
staticinherited

Get the value of the global debug output control flag.

Definition at line 391 of file itkObject.cxx.

MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  )
inherited
const MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  ) const
inherited
Returns
A constant reference to this objects MetaDataDictionary.

Definition at line 548 of file itkObject.cxx.

References NULL.

ModifiedTimeType itk::Object::GetMTime ( void  ) const
virtualinherited

Return this objects modified time.

Return the modification for this object.

Reimplemented in itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexConjugatePixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType, TTransformPrecisionType >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::SpatialObject< VDimension >, itk::SpatialObject< 3 >, itk::SpatialObject< TDimension >, itk::SpatialObject< TMesh::PointDimension >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::InverseDisplacementFieldImageFilter< TInputImage, TOutputImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::TransformToDisplacementFieldSource< TOutputImage, TTransformPrecisionType >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::LandmarkDisplacementFieldSource< TOutputImage >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::MeshSpatialObject< TMesh >, and itk::SceneSpatialObject< TSpaceDimension >.

Definition at line 283 of file itkObject.cxx.

Referenced by itk::LandmarkDisplacementFieldSource< TOutputImage >::GetMTime(), itk::DeformationFieldSource< TOutputImage >::GetMTime(), itk::TransformToDisplacementFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::InverseDisplacementFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >::GetMTime(), itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< VDimension >::GetMTime(), itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType, TTransformPrecisionType >::GetMTime(), itk::SpatialObject< TMesh::PointDimension >::GetObjectMTime(), and itk::ProcessObject::UpdateOutputInformation().

template<unsigned int NSpaceDimension = 3>
virtual const char* itk::bio::CellularAggregate< NSpaceDimension >::GetNameOfClass ( ) const
virtual

Standard part of all itk objects.

Reimplemented from itk::bio::CellularAggregateBase.

template<unsigned int NSpaceDimension>
unsigned int itk::bio::CellularAggregate< NSpaceDimension >::GetNumberOfCells ( void  ) const

Definition at line 60 of file itkBioCellularAggregate.hxx.

virtual const std::string& itk::Object::GetObjectName ( )
virtualinherited
virtual int itk::LightObject::GetReferenceCount ( ) const
inlinevirtualinherited

Gets the reference count on this object.

Definition at line 112 of file itkLightObject.h.

template<unsigned int NSpaceDimension>
CellularAggregate< NSpaceDimension >::SubstratesVector & itk::bio::CellularAggregate< NSpaceDimension >::GetSubstrates ( void  )
virtual

Definition at line 607 of file itkBioCellularAggregate.hxx.

template<unsigned int NSpaceDimension>
CellularAggregate< NSpaceDimension >::SubstrateValueType itk::bio::CellularAggregate< NSpaceDimension >::GetSubstrateValue ( IdentifierType  cellId,
unsigned int  substrateId 
) const
virtual

The actual implementation is provided in the derived classes where the Cell dimension is known.

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 615 of file itkBioCellularAggregate.hxx.

const TimeStamp & itk::Object::GetTimeStamp ( ) const
virtualinherited

Return this object's time stamp.

Return the modification for this object.

Reimplemented in itk::RealTimeClock.

Definition at line 293 of file itkObject.cxx.

Referenced by itk::RealTimeClock::GetTimeStamp().

template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::GetVoronoi ( IdentifierType  cellId,
VoronoiRegionAutoPointer voronoiPointer 
) const
virtual
static void itk::Object::GlobalWarningDisplayOff ( )
inlinestaticinherited

Definition at line 118 of file itkObject.h.

Referenced by itk::OutputWindow::DisplayText().

static void itk::Object::GlobalWarningDisplayOn ( )
inlinestaticinherited

Definition at line 116 of file itkObject.h.

bool itk::Object::HasObserver ( const EventObject event) const
inherited

Return true if an observer is registered for this event.

Definition at line 472 of file itkObject.cxx.

LightObject::Pointer itk::LightObject::InternalClone ( ) const
protectedvirtualinherited
void itk::Object::InvokeEvent ( const EventObject event)
inherited
void itk::Object::InvokeEvent ( const EventObject event) const
inherited

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

Definition at line 462 of file itkObject.cxx.

itk::LightObject::itkCloneMacro ( Self  )
inherited
template<unsigned int NSpaceDimension = 3>
itk::bio::CellularAggregate< NSpaceDimension >::itkGetModifiableObjectMacro ( Mesh  ,
MeshType   
)
template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::KillAll ( void  )
virtual

Definition at line 361 of file itkBioCellularAggregate.hxx.

void itk::Object::Modified ( void  ) const
virtualinherited

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Make sure this object's modified time is greater than all others.

Reimplemented in otb::SVMModel< TValue, TLabel >, itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexConjugatePixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, otb::SurfaceAdjacencyEffect6SCorrectionSchemeFilter< TInputImage, TOutputImage >, otb::GenericRSTransform< TScalarType, NInputDimensions, NOutputDimensions >, itk::GPUImage< TPixel, VImageDimension >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, TBufferConverter >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, MeanShift::VectorBufferConverter >, otb::GCPsToRPCSensorModelImageFilter< TImage >, otb::Polygon< TValue >, otb::ImageRegionAdaptativeSplitter< VImageDimension >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, otb::GenericInterpolateImageFunction< TInputImage, TFunction, TBoundaryCondition, TCoordRep >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, otb::PolyLineParametricPathWithValue< TValue, VDimension >, otb::PolyLineParametricPathWithValue< TValue, 2 >, otb::PhysicalToRPCSensorModelImageFilter< TImage >, itk::NormalizeImageFilter< TInputImage, TOutputImage >, and otb::StatisticsXMLFileReader< TMeasurementVector >.

Definition at line 312 of file itkObject.cxx.

Referenced by itk::AttributeSelectionLabelMapFilter< TImage, Functor::LabelLabelObjectAccessor< TImage::LabelObjectType > >::AddAttribute(), itk::Function::ConvergenceMonitoringFunction< TScalar, TScalar >::AddEnergyValue(), otb::Wrapper::InputImageListParameter::AddFromFileName(), otb::Wrapper::InputVectorDataListParameter::AddFromFileName(), otb::Wrapper::InputFilenameListParameter::AddFromFileName(), otb::Wrapper::InputImageListParameter::AddImage(), otb::Wrapper::InputImageListParameter::AddNullElement(), otb::Wrapper::InputVectorDataListParameter::AddNullElement(), otb::Wrapper::InputFilenameListParameter::AddNullElement(), otb::Wrapper::StringListParameter::AddNullElement(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::AddSeed(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::AddSpecifiedRegion(), otb::Wrapper::InputVectorDataListParameter::AddVectorData(), itk::PolyLineParametricPath< VDimension >::AddVertex(), itk::ChainCodePath< 2 >::ChangeStep(), itk::ChainCodePath2D::ChangeStep(), itk::FourierSeriesPath< VDimension >::Clear(), itk::HilbertPath< TIndexValue, VDimension >::Clear(), itk::ChainCodePath< 2 >::Clear(), itk::ChainCodePath2D::Clear(), itk::AttributeSelectionLabelMapFilter< TImage, Functor::LabelLabelObjectAccessor< TImage::LabelObjectType > >::ClearAttributeSet(), itk::Function::ConvergenceMonitoringFunction< TScalar, TScalar >::ClearEnergyValues(), itk::MultiTransform< TScalar, NDimensions >::ClearTransformQueue(), otb::Wrapper::InputFilenameListParameter::ClearValue(), otb::Wrapper::InputImageListParameter::ClearValue(), otb::Wrapper::InputVectorDataListParameter::ClearValue(), otb::Wrapper::InputFilenameListParameter::Erase(), otb::Wrapper::InputImageListParameter::Erase(), otb::Wrapper::InputVectorDataListParameter::Erase(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::InitializeSeedList(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::InitializeSpecifiedRegionList(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::InsertNarrowBandNode(), itk::ChainCodePath2D::InsertStep(), itk::ChainCodePath< 2 >::InsertStep(), otb::ogr::ImageReference< double >::Modified(), itk::MultiTransform< TScalar, NDimensions >::PopBackTransform(), itk::MultiTransform< TScalar, NDimensions >::PopFrontTransform(), itk::MultiTransform< TScalar, NDimensions >::PushBackTransform(), itk::MultiTransform< TScalar, NDimensions >::PushFrontTransform(), itk::Statistics::SubsamplerBase< TSample >::RequestMaximumNumberOfResults(), itk::AdaptImageFilter< TInputImage, TOutputImage, TAccessor >::SetAccessor(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetAdvectionScaling(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetAlivePoints(), itk::CompositeTransform< TScalar, NDimensions >::SetAllTransformsToOptimize(), itk::GaussianInterpolateImageFunction< TInputImage, TCoordRep >::SetAlpha(), itk::WeightedAddImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetAlpha(), itk::SigmoidImageFilter< TInputImage, TOutputImage >::SetAlpha(), itk::AttributeSelectionLabelMapFilter< TImage, Functor::LabelLabelObjectAccessor< TImage::LabelObjectType > >::SetAttributeSet(), itk::LevelSetVelocityNeighborhoodExtractor< TLevelSet, TAuxValue, VAuxDimension >::SetAuxImage(), itk::SigmoidImageFilter< TInputImage, TOutputImage >::SetBeta(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetBinaryMask(), otb::TileMapImageIO::SetCacheDirectory(), itk::MatrixOffsetTransformBase< TScalar, 3, 3 >::SetCenter(), itk::ConnectedRegionsMeshFilter< TInputMesh, TOutputMesh >::SetClosestPoint(), itk::ConstantPadImageFilter< TInputImage, TOutputImage >::SetConstant(), itk::DivideOrZeroOutImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetConstant(), itk::LBFGSBOptimizer::SetCostFunction(), itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetCovariance(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetCurvatureScaling(), itk::CurvesLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma(), itk::NarrowBandCurvesLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma(), itk::GeodesicActiveContourLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma(), itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma(), otb::ImageIOBase::SetDimensions(), itk::ImageIOBase::SetDimensions(), otb::ImageIOBase::SetDirection(), itk::ImageIOBase::SetDirection(), itk::ExtractImageFilter< TInputImage, TOutputImage >::SetDirectionCollapseToStrategy(), itk::ComposeDisplacementFieldsImageFilter< TInputImage, TOutputImage >::SetDisplacementField(), itk::InvertDisplacementFieldImageFilter< TInputImage, TOutputImage >::SetDisplacementField(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetEdgeWeight(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetEdgeWeight(), itk::watershed::Boundary< TScalar, TDimension >::SetFace(), itk::ExpNegativeImageFilter< TInputImage, TOutputImage >::SetFactor(), itk::FileListVideoIO::SetFileName(), itk::AnisotropicDiffusionImageFilter< TInputImage, TOutputImage >::SetFixedAverageGradientMagnitude(), itk::watershed::Boundary< TScalar, TDimension >::SetFlatHash(), itk::NaryFunctorImageFilter< TInputImage, TOutputImage, Functor::Maximum1< TInputImage::PixelType, TInputImage::PixelType > >::SetFunctor(), itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, Functor::ReciprocalHAlphaFunctor< TInputImage::PixelType, TOutputImage::PixelType > >::SetFunctor(), itk::HistogramToImageFilter< THistogram, TImage, Function::HistogramIntensityFunction< SizeValueType, TImage::PixelType > >::SetFunctor(), itk::TernaryFunctorImageFilter< TInputMultiSpectralImage, TInputMultiSpectralInterpImage, TInputPanchroImage, TOutputImage, TFunctor >::SetFunctor(), itk::ConnectedComponentFunctorImageFilter< TInputImage, TOutputImage, Functor::SimilarVectorsFunctor< TInputImage::ValueType >, TMaskImage >::SetFunctor(), itk::BinaryFunctorImageFilter< TInputImage1, TInputImage2, TOutputImage, Functor::DivideOrZeroOut< TInputImage1::PixelType, TInputImage2::PixelType, TOutputImage::PixelType > >::SetFunctor(), itk::ImageMomentsCalculator< TImage >::SetImage(), otb::Wrapper::InputImageListParameter::SetImageList(), itk::VectorIndexSelectionCastImageFilter< TInputImage, TOutputImage >::SetIndex(), itk::MatrixIndexSelectionImageFilter< TInputImage, TOutputImage >::SetIndices(), itk::TriangleMeshToBinaryImageFilter< TInputMesh, TOutputImage >::SetInfoImage(), itk::MRIBiasFieldCorrectionFilter< TInputImage, TOutputImage, TMaskImage >::SetInitialBiasFieldCoefficients(), itk::AmoebaOptimizer::SetInitialSimplexDelta(), itk::HistogramAlgorithmBase< THistogram >::SetInputHistogram(), otb::HistogramStatisticsFunction< TInputHistogram, TOutput >::SetInputHistogram(), otb::ImageToGenericRSOutputParameters< TImage >::SetInputKeywordList(), itk::LabelVotingImageFilter< TInputImage, TOutputImage >::SetLabelForUndecidedPixels(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::SetLabelForUndecidedPixels(), itk::watershed::Segmenter< InputImageType >::SetLargestPossibleRegion(), itk::TemporalDataObject::SetLargestPossibleTemporalRegion(), otb::Wrapper::InputImageListParameter::SetListFromFileName(), otb::Wrapper::InputVectorDataListParameter::SetListFromFileName(), otb::Wrapper::InputFilenameListParameter::SetListFromFileName(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetLowerThreshold(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetLowerThreshold(), itk::MaskNegatedImageFilter< TInputImage, TMaskImage, TOutputImage >::SetMaskingValue(), itk::MaskImageFilter< TInputImage, TMaskImage, TOutputImage >::SetMaskingValue(), itk::MatrixOffsetTransformBase< TScalar, 3, 3 >::SetMatrix(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetMaximumCurvatureTimeStep(), itk::watershed::SegmentTable< TScalar >::SetMaximumDepth(), itk::DiscreteGaussianImageFilter< TInputImage, TOutputImage >::SetMaximumError(), itk::CannyEdgeDetectionImageFilter< ImageType, ImageType >::SetMaximumError(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::SetMaximumNumberOfIterations(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetMaximumPropagationTimeStep(), itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetMean(), itk::Statistics::MembershipFunctionBase< TMeasurementVector >::SetMeasurementVectorSize(), itk::Statistics::DistanceMetric< Array< double > >::SetMeasurementVectorSize(), itk::Statistics::Sample< ImageJointDomainTraits< TImage >::MeasurementVectorType >::SetMeasurementVectorSize(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::SetNarrowBandTotalRadius(), itk::OpenCVVideoIO::SetNextFrameToRead(), itk::VXLVideoIO::SetNextFrameToRead(), otb::Wrapper::InputImageListParameter::SetNthFileName(), otb::Wrapper::InputVectorDataListParameter::SetNthFileName(), otb::Wrapper::InputFilenameListParameter::SetNthFileName(), itk::CompositeTransform< TScalar, NDimensions >::SetNthTransformToOptimize(), otb::ImageIOBase::SetNumberOfDimensions(), itk::ImageIOBase::SetNumberOfDimensions(), itk::SparseFieldFourthOrderLevelSetImageFilter< TInputImage, TOutputImage >::SetNumberOfLayers(), itk::Statistics::UniformRandomSpatialNeighborSubsampler< TSample, TRegion >::SetNumberOfResultsRequested(), itk::FastMarchingReachedTargetNodesStoppingCriterion< TInput, TOutput >::SetNumberOfTargetsToBeReached(), itk::MatrixOffsetTransformBase< TScalar, 3, 3 >::SetOffset(), itk::NeighborhoodOperatorImageFunction< TInputImage, TOutput >::SetOperator(), itk::VectorNeighborhoodOperatorImageFilter< TInputImage, TOutputImage >::SetOperator(), itk::NeighborhoodOperatorImageFilter< TInputImage, TOutputImage, TOperatorValueType >::SetOperator(), otb::ImageIOBase::SetOrigin(), itk::ImageIOBase::SetOrigin(), itk::SigmoidImageFilter< TInputImage, TOutputImage >::SetOutputMaximum(), itk::SigmoidImageFilter< TInputImage, TOutputImage >::SetOutputMinimum(), otb::ImageToGenericRSOutputParameters< TImage >::SetOutputProjectionRef(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetOutsidePoints(), itk::MaskNegatedImageFilter< TInputImage, TMaskImage, TOutputImage >::SetOutsideValue(), itk::MaskImageFilter< TInputImage, TMaskImage, TOutputImage >::SetOutsideValue(), otb::MapProjectionAdapter::SetParameter(), itk::Statistics::ProbabilityDistribution::SetParameters(), itk::DisplacementFieldTransform< TScalar, NDimensions >::SetParameters(), itk::FFTWHalfHermitianToRealInverseFFTImageFilter< TInputImage, TOutputImage >::SetPlanRigor(), itk::FFTWInverseFFTImageFilter< TInputImage, TOutputImage >::SetPlanRigor(), itk::FFTWForwardFFTImageFilter< TInputImage, TOutputImage >::SetPlanRigor(), itk::FFTWRealToHalfHermitianForwardFFTImageFilter< TInputImage, TOutputImage >::SetPlanRigor(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::SetPriorProbabilities(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetPropagationScaling(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::ChangeInformationImageFilter< TInputImage >::SetReferenceImage(), itk::ImportImageFilter< TPixel, VImageDimension >::SetRegion(), itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::SetRegionOfInterest(), itk::ScaleTransform< TScalar, NDimensions >::SetScale(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints1(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints2(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSegmentationFunction(), itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetShapePriorScaling(), itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetShrinkFactorsPerDimension(), itk::GaussianInterpolateImageFunction< TInputImage, TCoordRep >::SetSigma(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingConductance(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingConductance(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingIterations(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingIterations(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingTimeStep(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSmoothingTimeStep(), itk::PowellOptimizer::SetSpaceDimension(), otb::ImageIOBase::SetSpacing(), itk::ImageIOBase::SetSpacing(), itk::SpatialObject< TMesh::PointDimension >::SetSpacing(), itk::ImageMomentsCalculator< TImage >::SetSpatialObjectMask(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetSpeedConstant(), itk::FastMarchingReachedTargetNodesStoppingCriterion< TInput, TOutput >::SetTargetCondition(), itk::FastMarchingReachedTargetNodesStoppingCriterion< TInput, TOutput >::SetTargetNodes(), itk::FastMarchingUpwindGradientImageFilter< TLevelSet, TSpeedImage >::SetTargetPoints(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::SetTerminationUpdateThreshold(), itk::DivideOrZeroOutImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetThreshold(), itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetThreshold(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::MatrixOffsetTransformBase< TScalar, 3, 3 >::SetTranslation(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::SetTrialPoints(), itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUpperThreshold(), itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUpperThreshold(), itk::Statistics::UniformRandomSpatialNeighborSubsampler< TSample, TRegion >::SetUseClockForSeed(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUseMinimalCurvature(), itk::watershed::Boundary< TScalar, TDimension >::SetValid(), otb::Wrapper::OutputProcessXMLParameter::SetValue(), otb::Wrapper::InputProcessXMLParameter::SetValue(), otb::Wrapper::InputFilenameParameter::SetValue(), otb::Wrapper::OutputFilenameParameter::SetValue(), otb::Wrapper::ListViewParameter::SetValue(), otb::Wrapper::ChoiceParameter::SetValue(), itk::DiscreteGaussianImageFilter< TInputImage, TOutputImage >::SetVariance(), itk::CannyEdgeDetectionImageFilter< ImageType, ImageType >::SetVariance(), otb::Wrapper::InputVectorDataListParameter::SetVectorDataList(), otb::MapProjectionAdapter::SetWkt(), itk::LabelVotingImageFilter< TInputImage, TOutputImage >::UnsetLabelForUndecidedPixels(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::UnsetLabelForUndecidedPixels(), itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::UnsetMaximumNumberOfIterations(), and itk::MultiLabelSTAPLEImageFilter< TInputImage, TOutputImage, TWeights >::UnsetPriorProbabilities().

template<unsigned int NSpaceDimension = 3>
static Pointer itk::bio::CellularAggregate< NSpaceDimension >::New ( )
static

Method for creation through the object factory.

template<unsigned int NSpaceDimension = 3>
void itk::bio::CellularAggregate< NSpaceDimension >::operator= ( const Self )
protected
void itk::LightObject::Print ( std::ostream &  os,
Indent  indent = 0 
) const
inherited

Cause the object to print itself out.

Avoid DLL boundary problems. This function will be common to all itk objects. It just calls the header/self/trailer virtual print methods, which can be overriden by subclasses (any itk object).

Definition at line 137 of file itkLightObject.cxx.

References itk::Indent::GetNextIndent().

Referenced by itk::operator<<(), and itk::VideoStream< TFrameType >::PrintSelf().

void itk::LightObject::PrintHeader ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Define a default print header for all objects.

Definition at line 315 of file itkLightObject.cxx.

bool itk::Object::PrintObservers ( std::ostream &  os,
Indent  indent 
) const
protectedinherited

Definition at line 483 of file itkObject.cxx.

template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::PrintSelf ( std::ostream &  os,
itk::Indent  indent 
) const
protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Chaining method to print an object's instance variables, as well as its superclasses.

Reimplemented from itk::Object.

Definition at line 84 of file itkBioCellularAggregate.hxx.

void itk::LightObject::PrintTrailer ( std::ostream &  os,
Indent  indent 
) const
protectedvirtualinherited

Define a default print trailer for all objects.

Definition at line 325 of file itkLightObject.cxx.

void itk::Object::Register ( ) const
virtualinherited

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

Definition at line 323 of file itkObject.cxx.

Referenced by itk::ObjectFactoryBase::RegisterFactory(), and itk::ObjectFactoryBase::RegisterFactoryInternal().

template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::Remove ( CellBase cell)
virtual
void itk::Object::RemoveAllObservers ( )
inherited

Remove all observers .

Definition at line 442 of file itkObject.cxx.

void itk::Object::RemoveObserver ( unsigned long  tag)
inherited

Remove the observer with this tag value.

Definition at line 432 of file itkObject.cxx.

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), and otb::ImageFileWriter< TInputImage >::Update().

void itk::Object::SetDebug ( bool  debugFlag) const
inherited

Set the value of the debug flag. A non-zero value turns debugging on.

Definition at line 273 of file itkObject.cxx.

template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::SetEgg ( BioCellType cell,
const PointType position 
)
virtual

Definition at line 196 of file itkBioCellularAggregate.hxx.

void itk::Object::SetGlobalWarningDisplay ( bool  val)
staticinherited

This is a global flag that controls whether any debug, warning or error messages are displayed.

Set the value of the global debug output control flag.

Definition at line 381 of file itkObject.cxx.

template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::SetGrowthRadiusIncrement ( double  value)

Definition at line 76 of file itkBioCellularAggregate.hxx.

template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::SetGrowthRadiusLimit ( double  value)

Definition at line 68 of file itkBioCellularAggregate.hxx.

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary rhs)
inherited
virtual void itk::Object::SetObjectName ( std::string  _arg)
virtualinherited

A facility to help application programmers set a human identifiable name for a given object. This has no inherent use in ITK, but is a convenience to allow developers to provide a name for this object.

void itk::Object::SetReferenceCount ( int  ref)
virtualinherited

Sets the reference count (use with care)

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 359 of file itkObject.cxx.

void itk::Object::SetTimeStamp ( const TimeStamp timeStamp)
protectedvirtualinherited

Set the time stamp of this object. This method must be used very carefully !!!. Most mortals will never need to call this method.

Set the time stamp of this object. To be used very carefully !!!. Most mortals will never need to call this method.

Definition at line 302 of file itkObject.cxx.

void itk::Object::UnRegister ( ) const
virtualinherited

Decrease the reference count (release by another object).

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 337 of file itkObject.cxx.

Referenced by itk::ObjectFactoryBase::DeleteNonInternalFactory(), and itk::Object::New().

template<unsigned int NSpaceDimension>
void itk::bio::CellularAggregate< NSpaceDimension >::UpdatePositions ( void  )
protectedvirtual

Member Data Documentation

template<unsigned int NSpaceDimension = 3>
SizeValueType itk::bio::CellularAggregate< NSpaceDimension >::m_ClosestPointComputationInterval
private

Definition at line 170 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
double itk::bio::CellularAggregate< NSpaceDimension >::m_FrictionForce
private

Definition at line 168 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
SizeValueType itk::bio::CellularAggregate< NSpaceDimension >::m_Iteration
private

Definition at line 169 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
MeshPointer itk::bio::CellularAggregate< NSpaceDimension >::m_Mesh
private

Definition at line 166 of file itkBioCellularAggregate.h.

InternalReferenceCountType itk::LightObject::m_ReferenceCount
mutableprotectedinherited

Number of uses of this object by other objects.

Definition at line 156 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock
mutableprotectedinherited

Mutex lock to protect modification to the reference count

Definition at line 159 of file itkLightObject.h.

template<unsigned int NSpaceDimension = 3>
SubstratesVector itk::bio::CellularAggregate< NSpaceDimension >::m_Substrates
private

Definition at line 167 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>
const unsigned int itk::bio::CellularAggregate< NSpaceDimension >::SpaceDimension = NSpaceDimension
static

The documentation for this class was generated from the following files:

Generated at Sat Mar 8 2014 18:02:22 for Orfeo Toolbox with doxygen 1.8.3.1