This class represent an aggregation of bio::Cell objects This class is the base for different types of cellular groups including bacterial colonies and pluricellular organisms. More...

#include <itkBioCellularAggregate.h>

Inheritance diagram for itk::bio::CellularAggregate< NSpaceDimension >:

Collaboration diagram for itk::bio::CellularAggregate< NSpaceDimension >:

List of all members.

Public Types
typedef Cell< NSpaceDimension >	BioCellType
typedef MeshType::CellAutoPointer	CellAutoPointer
typedef CellInterface < typename MeshType::CellPixelType, typename MeshType::CellTraits >	CellInterfaceType
typedef double	CellPixelType
typedef PointDataContainer::ConstIterator	CellsConstIterator
typedef PointDataContainer::Iterator	CellsIterator
typedef SmartPointer< const Self >	ConstPointer
typedef MeshType::PointIdentifier	IdentifierType
typedef float	ImagePixelType
typedef MeshType::ConstPointer	MeshConstPointer
typedef MeshType::Pointer	MeshPointer
typedef DefaultDynamicMeshTraits < PointPixelType, NSpaceDimension, NSpaceDimension, double, double, CellPixelType >	MeshTraits
typedef Mesh< PointPixelType, NSpaceDimension, MeshTraits >	MeshType
typedef MeshType::PointDataContainer	PointDataContainer
typedef SmartPointer< Self >	Pointer
typedef BioCellType *	PointPixelType
typedef PointsContainer::ConstIterator	PointsConstIterator
typedef MeshType::PointsContainer	PointsContainer
typedef PointsContainer::Iterator	PointsIterator
typedef MeshType::PointType	PointType
typedef CellularAggregate	Self
typedef SubstrateType::Pointer	SubstratePointer
typedef std::vector < SubstratePointer >	SubstratesVector
typedef Image< ImagePixelType, NSpaceDimension >	SubstrateType
typedef ImagePixelType	SubstrateValueType
typedef CellularAggregateBase	Superclass
typedef BioCellType::VectorType	VectorType
typedef VoronoiRegionsContainer::ConstIterator	VoronoiConstIterator
typedef VoronoiRegionsContainer::Iterator	VoronoiIterator
typedef VoronoiRegionType::SelfAutoPointer	VoronoiRegionAutoPointer
typedef MeshType::CellsContainer	VoronoiRegionsContainer
typedef PolygonCell < CellInterfaceType >	VoronoiRegionType

Public Member Functions
virtual void	Add (CellBase *cell)
virtual void	Add (CellBase *cell, const VectorType &perturbation)
virtual void	Add (CellBase cellA, CellBase cellB, double perturbationLength)
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	AddSubstrate (SubstrateType *substrate)
virtual void	AdvanceTimeStep (void)
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual void	DebugOff () const
virtual void	DebugOn () const
virtual void	Delete ()
void	DumpContent (std::ostream &os) const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
virtual MeshType *	GetMesh ()
virtual const MeshType *	GetMesh ()
MetaDataDictionary &	GetMetaDataDictionary (void)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
virtual unsigned long	GetMTime () const
virtual const char *	GetNameOfClass () const
unsigned int	GetNumberOfCells (void) const
virtual int	GetReferenceCount () const
virtual SubstratesVector &	GetSubstrates (void)
virtual SubstrateValueType	GetSubstrateValue (unsigned long int cellId, unsigned int substrateId) const
virtual void	GetVoronoi (unsigned long int cellId, VoronoiRegionAutoPointer &) const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	KillAll (void)
virtual void	Modified () const
void	Print (std::ostream &os, Indent indent=0) const
virtual void	Register () const
virtual void	Remove (CellBase *cell)
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
virtual void	SetEgg (BioCellType *cell, const PointType &position)
void	SetGrowthRadiusIncrement (double value)
void	SetGrowthRadiusLimit (double value)
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int)
virtual void	UnRegister () const

Static Public Member Functions
static void	BreakOnError ()
static unsigned int	GetDimension ()
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
static void	SetGlobalWarningDisplay (bool flag)

Static Public Attributes
static const unsigned int	SpaceDimension = NSpaceDimension

Protected Types
typedef int	InternalReferenceCountType

Protected Member Functions
	CellularAggregate ()
	CellularAggregate (const Self &)
virtual	~CellularAggregate ()
virtual void	ClearForces (void)
virtual void	ComputeClosestPoints (void)
virtual void	ComputeForces (void)
void	operator= (const Self &)
virtual void	PrintHeader (std::ostream &os, Indent indent) const
bool	PrintObservers (std::ostream &os, Indent indent) const
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual void	UpdatePositions (void)

Protected Attributes
InternalReferenceCountType	m_ReferenceCount
SimpleFastMutexLock	m_ReferenceCountLock

Private Attributes
unsigned long	m_ClosestPointComputationInterval
double	m_FrictionForce
unsigned long	m_Iteration
MeshPointer	m_Mesh
SubstratesVector	m_Substrates

Detailed Description

template<unsigned int NSpaceDimension = 3>
class itk::bio::CellularAggregate< NSpaceDimension >

This class represent an aggregation of bio::Cell objects This class is the base for different types of cellular groups including bacterial colonies and pluricellular organisms.

Definition at line 41 of file itkBioCellularAggregate.h.

Member Typedef Documentation

template<unsigned int NSpaceDimension = 3>

typedef Cell<NSpaceDimension> itk::bio::CellularAggregate< NSpaceDimension >::BioCellType

Definition at line 59 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef MeshType::CellAutoPointer itk::bio::CellularAggregate< NSpaceDimension >::CellAutoPointer

Definition at line 96 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef CellInterface< typename MeshType::CellPixelType, typename MeshType::CellTraits > itk::bio::CellularAggregate< NSpaceDimension >::CellInterfaceType

Voronoi region around a bio::Cell

Definition at line 101 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef double itk::bio::CellularAggregate< NSpaceDimension >::CellPixelType

Definition at line 61 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef PointDataContainer::ConstIterator itk::bio::CellularAggregate< NSpaceDimension >::CellsConstIterator

Definition at line 93 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef PointDataContainer::Iterator itk::bio::CellularAggregate< NSpaceDimension >::CellsIterator

Definition at line 90 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef SmartPointer<const Self> itk::bio::CellularAggregate< NSpaceDimension >::ConstPointer

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 48 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef MeshType::PointIdentifier itk::bio::CellularAggregate< NSpaceDimension >::IdentifierType

Definition at line 95 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef float itk::bio::CellularAggregate< NSpaceDimension >::ImagePixelType

Convenient typedefs.

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 106 of file itkBioCellularAggregate.h.

typedef int itk::LightObject::InternalReferenceCountType

protectedinherited

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 137 of file itkLightObject.h.

template<unsigned int NSpaceDimension = 3>

typedef MeshType::ConstPointer itk::bio::CellularAggregate< NSpaceDimension >::MeshConstPointer

Definition at line 81 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef MeshType::Pointer itk::bio::CellularAggregate< NSpaceDimension >::MeshPointer

Mesh Associated types

Definition at line 80 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef DefaultDynamicMeshTraits< PointPixelType, NSpaceDimension, NSpaceDimension, double, double, CellPixelType > itk::bio::CellularAggregate< NSpaceDimension >::MeshTraits

Mesh Traits

Definition at line 72 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef Mesh< PointPixelType, NSpaceDimension, MeshTraits > itk::bio::CellularAggregate< NSpaceDimension >::MeshType

Mesh Traits

Definition at line 77 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef MeshType::PointDataContainer itk::bio::CellularAggregate< NSpaceDimension >::PointDataContainer

Definition at line 87 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef SmartPointer<Self> itk::bio::CellularAggregate< NSpaceDimension >::Pointer

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 47 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef BioCellType* itk::bio::CellularAggregate< NSpaceDimension >::PointPixelType

Definition at line 60 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef PointsContainer::ConstIterator itk::bio::CellularAggregate< NSpaceDimension >::PointsConstIterator

Definition at line 92 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef MeshType::PointsContainer itk::bio::CellularAggregate< NSpaceDimension >::PointsContainer

Definition at line 86 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef PointsContainer::Iterator itk::bio::CellularAggregate< NSpaceDimension >::PointsIterator

Definition at line 89 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef MeshType::PointType itk::bio::CellularAggregate< NSpaceDimension >::PointType

Definition at line 82 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef CellularAggregate itk::bio::CellularAggregate< NSpaceDimension >::Self

Standard class typedefs.

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 45 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef SubstrateType::Pointer itk::bio::CellularAggregate< NSpaceDimension >::SubstratePointer

Definition at line 108 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef std::vector< SubstratePointer > itk::bio::CellularAggregate< NSpaceDimension >::SubstratesVector

Definition at line 110 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef Image<ImagePixelType, NSpaceDimension > itk::bio::CellularAggregate< NSpaceDimension >::SubstrateType

Definition at line 107 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef ImagePixelType itk::bio::CellularAggregate< NSpaceDimension >::SubstrateValueType

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 109 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef CellularAggregateBase itk::bio::CellularAggregate< NSpaceDimension >::Superclass

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 46 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef BioCellType::VectorType itk::bio::CellularAggregate< NSpaceDimension >::VectorType

Definition at line 83 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef VoronoiRegionsContainer::ConstIterator itk::bio::CellularAggregate< NSpaceDimension >::VoronoiConstIterator

Definition at line 94 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef VoronoiRegionsContainer::Iterator itk::bio::CellularAggregate< NSpaceDimension >::VoronoiIterator

Definition at line 91 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef VoronoiRegionType::SelfAutoPointer itk::bio::CellularAggregate< NSpaceDimension >::VoronoiRegionAutoPointer

Definition at line 103 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef MeshType::CellsContainer itk::bio::CellularAggregate< NSpaceDimension >::VoronoiRegionsContainer

Definition at line 88 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

typedef PolygonCell< CellInterfaceType > itk::bio::CellularAggregate< NSpaceDimension >::VoronoiRegionType

Definition at line 102 of file itkBioCellularAggregate.h.

Constructor & Destructor Documentation

template<unsigned int NSpaceDimension>

itk::bio::CellularAggregate< NSpaceDimension >::CellularAggregate ( )

protected

Definition at line 29 of file itkBioCellularAggregate.txx.

References itk::RGBPixel< TComponent >::SetBlue(), itk::RGBPixel< TComponent >::SetGreen(), and itk::RGBPixel< TComponent >::SetRed().

template<unsigned int NSpaceDimension>

itk::bio::CellularAggregate< NSpaceDimension >::~CellularAggregate ( )

protectedvirtual

Definition at line 53 of file itkBioCellularAggregate.txx.

template<unsigned int NSpaceDimension = 3>

itk::bio::CellularAggregate< NSpaceDimension >::CellularAggregate ( const Self & )

protected

Member Function Documentation

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::Add ( CellBase * cell )

virtual

Definition at line 208 of file itkBioCellularAggregate.txx.

References itk::FixedArray< TValueType, VLength >::Fill().

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::Add	(	CellBase *	cell,
		const VectorType &	perturbation
	)

virtual

Definition at line 257 of file itkBioCellularAggregate.txx.

References itk::PolygonCell< TCellInterface >::AddPointId(), itk::bio::CellBase::GetParentIdentifier(), itk::bio::CellBase::GetSelfIdentifier(), itk::bio::Cell< NSpaceDimension >::SetCellularAggregate(), itk::ExceptionObject::SetDescription(), and itk::ExceptionObject::SetLocation().

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::Add	(	CellBase *	cellA,
		CellBase *	cellB,
		double	perturbationLength
	)

virtual

The actual implementation is provided in the derived classes where the Cell dimension is known.

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 218 of file itkBioCellularAggregate.txx.

References itk::Vector< T, NVectorDimension >::GetNorm(), and itk::bio::CellBase::GetSelfIdentifier().

unsigned long itk::Object::AddObserver	(	const EventObject &	event,
		Command *	cmd
	)

inherited

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

Definition at line 389 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), itk::ProgressAccumulator::RegisterInternalFilter(), otb::ImageFileWriter< TInputImage >::Update(), and otb::WriterWatcherBase::WriterWatcherBase().

unsigned long itk::Object::AddObserver	(	const EventObject &	event,
		Command *	cmd
	)		const

inherited

Definition at line 401 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::AddSubstrate ( SubstrateType * substrate )

virtual

Definition at line 609 of file itkBioCellularAggregate.txx.

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::AdvanceTimeStep ( void )

virtual

Definition at line 329 of file itkBioCellularAggregate.txx.

References itk::bio::Cell< NSpaceDimension >::AdvanceTimeStep(), and itk::bio::CellBase::MarkedForRemoval().

void itk::LightObject::BreakOnError ( )

staticinherited

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

Definition at line 149 of file itkLightObject.cxx.

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::ClearForces ( void )

protectedvirtual

Definition at line 386 of file itkBioCellularAggregate.txx.

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::ComputeClosestPoints ( void )

protectedvirtual

Definition at line 503 of file itkBioCellularAggregate.txx.

References itk::Vector< T, NVectorDimension >::GetNorm(), and itk::bio::CellBase::GetRadius().

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::ComputeForces ( void )

protectedvirtual

Definition at line 429 of file itkBioCellularAggregate.txx.

References itk::bio::Cell< NSpaceDimension >::AddForce(), itk::Vector< T, NVectorDimension >::GetNorm(), and itk::bio::CellBase::GetRadius().

template<unsigned int NSpaceDimension = 3>

virtual::itk::LightObject::Pointer itk::bio::CellularAggregate< NSpaceDimension >::CreateAnother ( void ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::bio::CellularAggregateBase.

void itk::Object::DebugOff ( ) const

virtualinherited

Turn debugging output off.

Definition at line 253 of file itkObject.cxx.

void itk::Object::DebugOn ( ) const

virtualinherited

Turn debugging output on.

Definition at line 242 of file itkObject.cxx.

void itk::LightObject::Delete ( )

virtualinherited

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

Delete a itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C++ delete method will not work with reference counting.

Definition at line 88 of file itkLightObject.cxx.

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::DumpContent ( std::ostream & os ) const

Definition at line 559 of file itkBioCellularAggregate.txx.

Command * itk::Object::GetCommand ( unsigned long tag )

inherited

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

Definition at line 414 of file itkObject.cxx.

References itk::Object::GetCommand(), and NULL.

Referenced by itk::Object::GetCommand().

bool itk::Object::GetDebug ( ) const

inherited

Get the value of the debug flag.

Definition at line 264 of file itkObject.cxx.

Referenced by otb::ogr::ImageReference< double >::GetDebug().

template<unsigned int NSpaceDimension = 3>

static unsigned int itk::bio::CellularAggregate< NSpaceDimension >::GetDimension ( )

inlinestatic

Definition at line 115 of file itkBioCellularAggregate.h.

bool itk::Object::GetGlobalWarningDisplay ( )

staticinherited

Get the value of the global debug output control flag.

Definition at line 381 of file itkObject.cxx.

template<unsigned int NSpaceDimension = 3>

virtual MeshType* itk::bio::CellularAggregate< NSpaceDimension >::GetMesh ( )

virtual

template<unsigned int NSpaceDimension = 3>

virtual const MeshType* itk::bio::CellularAggregate< NSpaceDimension >::GetMesh ( )

virtual

MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void )

inherited

Returns:: A reference to this objects MetaDataDictionary.

Warning:: This reference may be changed.

Reimplemented in otb::ImageMetadataInterfaceBase.

Definition at line 532 of file itkObject.cxx.

References NULL.

const MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void ) const

inherited

Returns:: A constant reference to this objects MetaDataDictionary.

Reimplemented in otb::ImageMetadataInterfaceBase.

Definition at line 543 of file itkObject.cxx.

References NULL.

unsigned long itk::Object::GetMTime ( void ) const

virtualinherited

Return this objects modified time.

Return the modification for this object.

Definition at line 286 of file itkObject.cxx.

Referenced by itk::DeformationFieldSource< TOutputImage >::GetMTime(), itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >::GetMTime(), itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< TDimension >::GetMTime(), itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime(), otb::Function::NoStretchRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), itk::VTKImageExportBase::PipelineModifiedCallback(), and itk::ProcessObject::UpdateOutputInformation().

template<unsigned int NSpaceDimension = 3>

virtual const char* itk::bio::CellularAggregate< NSpaceDimension >::GetNameOfClass ( ) const

virtual

Standard part of all itk objects.

Reimplemented from itk::bio::CellularAggregateBase.

template<unsigned int NSpaceDimension>

unsigned int itk::bio::CellularAggregate< NSpaceDimension >::GetNumberOfCells ( void ) const

Definition at line 61 of file itkBioCellularAggregate.txx.

virtual int itk::LightObject::GetReferenceCount ( ) const

inlinevirtualinherited

Gets the reference count on this object.

Definition at line 105 of file itkLightObject.h.

template<unsigned int NSpaceDimension>

CellularAggregate< NSpaceDimension >::SubstratesVector & itk::bio::CellularAggregate< NSpaceDimension >::GetSubstrates ( void )

virtual

Definition at line 618 of file itkBioCellularAggregate.txx.

template<unsigned int NSpaceDimension>

CellularAggregate< NSpaceDimension >::SubstrateValueType itk::bio::CellularAggregate< NSpaceDimension >::GetSubstrateValue	(	unsigned long int	cellId,
		unsigned int	substrateId
	)		const

virtual

The actual implementation is provided in the derived classes where the Cell dimension is known.

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 626 of file itkBioCellularAggregate.txx.

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::GetVoronoi	(	unsigned long int	cellId,
		VoronoiRegionAutoPointer &	voronoiPointer
	)		const

virtual

Definition at line 170 of file itkBioCellularAggregate.txx.

References itk::ExceptionObject::SetDescription(), and itk::ExceptionObject::SetLocation().

static void itk::Object::GlobalWarningDisplayOff ( )

inlinestaticinherited

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

Referenced by itk::OutputWindow::DisplayText(), itk::Win32OutputWindow::PromptText(), and itk::Win32OutputWindow::WndProc().

static void itk::Object::GlobalWarningDisplayOn ( )

inlinestaticinherited

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

bool itk::Object::HasObserver ( const EventObject & event ) const

inherited

Return true if an observer is registered for this event.

Definition at line 467 of file itkObject.cxx.

void itk::Object::InvokeEvent ( const EventObject & event )

inherited

Call Execute on all the Commands observing this event id.

Definition at line 446 of file itkObject.cxx.

Referenced by otb::Wrapper::Application::AddProcess(), itk::ParallelSparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::IterateThreaderCallback(), and itk::VTKImageExportBase::UpdateDataCallback().

void itk::Object::InvokeEvent ( const EventObject & event ) const

inherited

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

Definition at line 457 of file itkObject.cxx.

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::KillAll ( void )

virtual

Definition at line 364 of file itkBioCellularAggregate.txx.

void itk::Object::Modified ( void ) const

virtualinherited

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Make sure this object's modified time is greater than all others.

Definition at line 297 of file itkObject.cxx.

template<unsigned int NSpaceDimension = 3>

static Pointer itk::bio::CellularAggregate< NSpaceDimension >::New ( )

static

Method for creation through the object factory.

Reimplemented from itk::bio::CellularAggregateBase.

template<unsigned int NSpaceDimension = 3>

void itk::bio::CellularAggregate< NSpaceDimension >::operator= ( const Self & )

protected

void itk::LightObject::Print	(	std::ostream &	os,
		Indent	indent = `0`
	)		const

inherited

Cause the object to print itself out.

Avoid DLL boundary problems. This function will be common to all itk objects. It just calls the header/self/trailer virtual print methods, which can be overriden by subclasses (any itk object).

Definition at line 135 of file itkLightObject.cxx.

References itk::Indent::GetNextIndent().

Referenced by itk::operator<<().

void itk::LightObject::PrintHeader	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtualinherited

Define a default print header for all objects.

Definition at line 320 of file itkLightObject.cxx.

bool itk::Object::PrintObservers	(	std::ostream &	os,
		Indent	indent
	)		const

protectedinherited

Definition at line 478 of file itkObject.cxx.

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::PrintSelf	(	std::ostream &	os,
		itk::Indent	indent
	)		const

protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Chaining method to print an object's instance variables, as well as its superclasses.

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 85 of file itkBioCellularAggregate.txx.

void itk::LightObject::PrintTrailer	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtualinherited

Define a default print trailer for all objects.

Definition at line 331 of file itkLightObject.cxx.

void itk::Object::Register ( ) const

virtualinherited

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

Definition at line 309 of file itkObject.cxx.

Referenced by itk::ObjectFactoryBase::RegisterFactory().

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::Remove ( CellBase * cell )

virtual

The actual implementation is provided in the derived classes where the Cell dimension is known.

Reimplemented from itk::bio::CellularAggregateBase.

Definition at line 96 of file itkBioCellularAggregate.txx.

References itk::bio::CellBase::GetSelfIdentifier(), itk::PolygonCell< TCellInterface >::PointIdsBegin(), itk::PolygonCell< TCellInterface >::PointIdsEnd(), itk::PolygonCell< TCellInterface >::RemovePointId(), itk::ExceptionObject::SetDescription(), and itk::ExceptionObject::SetLocation().

void itk::Object::RemoveAllObservers ( )

inherited

Remove all observers .

Definition at line 435 of file itkObject.cxx.

void itk::Object::RemoveObserver ( unsigned long tag )

inherited

Remove the observer with this tag value.

Definition at line 425 of file itkObject.cxx.

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), and otb::ImageFileWriter< TInputImage >::Update().

void itk::Object::SetDebug ( bool debugFlag ) const

inherited

Set the value of the debug flag. A non-zero value turns debugging on.

Definition at line 275 of file itkObject.cxx.

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::SetEgg	(	BioCellType *	cell,
		const PointType &	position
	)

virtual

Definition at line 199 of file itkBioCellularAggregate.txx.

void itk::Object::SetGlobalWarningDisplay ( bool val )

staticinherited

This is a global flag that controls whether any debug, warning or error messages are displayed.

Set the value of the global debug output control flag.

Definition at line 370 of file itkObject.cxx.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::SetGrowthRadiusIncrement ( double value )

Definition at line 77 of file itkBioCellularAggregate.txx.

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::SetGrowthRadiusLimit ( double value )

Definition at line 69 of file itkBioCellularAggregate.txx.

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary & rhs )

inherited

Returns:: Set the MetaDataDictionary

Reimplemented in otb::ImageMetadataInterfaceBase.

Definition at line 554 of file itkObject.cxx.

References NULL.

Referenced by otb::VectorImage< TPixel, VImageDimension >::CopyInformation(), and otb::Image< TPixel, VImageDimension >::CopyInformation().

void itk::Object::SetReferenceCount ( int ref )

virtualinherited

Sets the reference count (use with care)

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 347 of file itkObject.cxx.

void itk::Object::UnRegister ( ) const

virtualinherited

Decrease the reference count (release by another object).

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 324 of file itkObject.cxx.

Referenced by itk::Object::New(), and itk::ObjectFactoryBase::UnRegisterFactory().

template<unsigned int NSpaceDimension>

void itk::bio::CellularAggregate< NSpaceDimension >::UpdatePositions ( void )

protectedvirtual

Definition at line 402 of file itkBioCellularAggregate.txx.

References itk::bio::Cell< NSpaceDimension >::GetForce(), itk::Vector< T, NVectorDimension >::GetNorm(), and itk::bio::CellBase::GetSelfIdentifier().

Member Data Documentation

template<unsigned int NSpaceDimension = 3>

unsigned long itk::bio::CellularAggregate< NSpaceDimension >::m_ClosestPointComputationInterval

private

Definition at line 161 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

double itk::bio::CellularAggregate< NSpaceDimension >::m_FrictionForce

private

Definition at line 159 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

unsigned long itk::bio::CellularAggregate< NSpaceDimension >::m_Iteration

private

Definition at line 160 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

MeshPointer itk::bio::CellularAggregate< NSpaceDimension >::m_Mesh

private

Definition at line 157 of file itkBioCellularAggregate.h.

InternalReferenceCountType itk::LightObject::m_ReferenceCount

mutableprotectedinherited

Number of uses of this object by other objects.

Definition at line 141 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock

mutableprotectedinherited

Mutex lock to protect modification to the reference count

Definition at line 144 of file itkLightObject.h.

template<unsigned int NSpaceDimension = 3>

SubstratesVector itk::bio::CellularAggregate< NSpaceDimension >::m_Substrates

private

Definition at line 158 of file itkBioCellularAggregate.h.

template<unsigned int NSpaceDimension = 3>

const unsigned int itk::bio::CellularAggregate< NSpaceDimension >::SpaceDimension = NSpaceDimension

static

Definition at line 56 of file itkBioCellularAggregate.h.

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Static Public Attributes

Protected Types

Protected Member Functions

Protected Attributes

Private Attributes

Detailed Description

template<unsigned int NSpaceDimension = 3> class itk::bio::CellularAggregate< NSpaceDimension >

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<unsigned int NSpaceDimension = 3>
class itk::bio::CellularAggregate< NSpaceDimension >