itkNoiseImageFilter.txx

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/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    $RCSfile: itkNoiseImageFilter.txx,v $
  Language:  C++
  Date:      $Date: 2009-04-06 00:19:17 $
  Version:   $Revision: 1.7 $

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even 
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/
#ifndef __itkNoiseImageFilter_txx
#define __itkNoiseImageFilter_txx


// First make sure that the configuration is available.
// This line can be removed once the optimized versions
// gets integrated into the main directories.
#include "itkConfigure.h"

#ifdef ITK_USE_CONSOLIDATED_MORPHOLOGY
#include "itkOptNoiseImageFilter.txx"
#else


#include "itkNoiseImageFilter.h"

#include "itkConstNeighborhoodIterator.h"
#include "itkNeighborhoodInnerProduct.h"
#include "itkImageRegionIterator.h"
#include "itkNeighborhoodAlgorithm.h"
#include "itkZeroFluxNeumannBoundaryCondition.h"
#include "itkOffset.h"
#include "itkProgressReporter.h"

namespace itk
{

template <class TInputImage, class TOutputImage>
NoiseImageFilter<TInputImage, TOutputImage>
::NoiseImageFilter()
{
  m_Radius.Fill(1);
}

template <class TInputImage, class TOutputImage>
void 
NoiseImageFilter<TInputImage, TOutputImage>
::GenerateInputRequestedRegion() throw (InvalidRequestedRegionError)
{
  // call the superclass' implementation of this method
  Superclass::GenerateInputRequestedRegion();
  
  // get pointers to the input and output
  typename Superclass::InputImagePointer inputPtr = 
    const_cast< TInputImage * >( this->GetInput() );
  typename Superclass::OutputImagePointer outputPtr = this->GetOutput();
  
  if ( !inputPtr || !outputPtr )
    {
    return;
    }

  // get a copy of the input requested region (should equal the output
  // requested region)
  typename TInputImage::RegionType inputRequestedRegion;
  inputRequestedRegion = inputPtr->GetRequestedRegion();

  // pad the input requested region by the operator radius
  inputRequestedRegion.PadByRadius( m_Radius );

  // crop the input requested region at the input's largest possible region
  if ( inputRequestedRegion.Crop(inputPtr->GetLargestPossibleRegion()) )
    {
    inputPtr->SetRequestedRegion( inputRequestedRegion );
    return;
    }
  else
    {
    // Couldn't crop the region (requested region is outside the largest
    // possible region).  Throw an exception.

    // store what we tried to request (prior to trying to crop)
    inputPtr->SetRequestedRegion( inputRequestedRegion );
    
    // build an exception
    InvalidRequestedRegionError e(__FILE__, __LINE__);
    e.SetLocation(ITK_LOCATION);
    e.SetDescription("Requested region is (at least partially) outside the largest possible region.");
    e.SetDataObject(inputPtr);
    throw e;
    }
}


template< class TInputImage, class TOutputImage>
void
NoiseImageFilter< TInputImage, TOutputImage>
::ThreadedGenerateData(const OutputImageRegionType& outputRegionForThread,
                       int threadId)
{
  unsigned int i;
  ZeroFluxNeumannBoundaryCondition<InputImageType> nbc;

  ConstNeighborhoodIterator<InputImageType> bit;
  ImageRegionIterator<OutputImageType> it;
  
  // Allocate output
  typename OutputImageType::Pointer output = this->GetOutput();
  typename  InputImageType::ConstPointer input  = this->GetInput();
  
  // Find the data-set boundary "faces"
  typename NeighborhoodAlgorithm::ImageBoundaryFacesCalculator<InputImageType>::FaceListType faceList;
  NeighborhoodAlgorithm::ImageBoundaryFacesCalculator<InputImageType> bC;
  faceList = bC(input, outputRegionForThread, m_Radius);

  typename NeighborhoodAlgorithm::ImageBoundaryFacesCalculator<InputImageType>::FaceListType::iterator fit;

  // support progress methods/callbacks
  ProgressReporter progress(this, threadId, outputRegionForThread.GetNumberOfPixels());
  
  InputRealType value;
  InputRealType sum;
  InputRealType sumOfSquares;
  InputRealType var;
  InputRealType num;

  // Process each of the boundary faces.  These are N-d regions which border
  // the edge of the buffer.
  for (fit=faceList.begin(); fit != faceList.end(); ++fit)
    { 
    bit = ConstNeighborhoodIterator<InputImageType>(m_Radius,
                                                    input, *fit);
    unsigned int neighborhoodSize = bit.Size();
    num = static_cast<InputRealType>( bit.Size() );
      
    it = ImageRegionIterator<OutputImageType>(output, *fit);
    bit.OverrideBoundaryCondition(&nbc);
    bit.GoToBegin();

    while ( ! bit.IsAtEnd() )
      {
      sum = NumericTraits<InputRealType>::Zero;
      sumOfSquares = NumericTraits<InputRealType>::Zero;
      for (i = 0; i < neighborhoodSize; ++i)
        {
        value = static_cast<InputRealType>( bit.GetPixel(i) );
        sum += value;
        sumOfSquares += (value*value);
        }
      
      // calculate the standard deviation value
      var = (sumOfSquares - (sum*sum/num)) / (num - 1.0);
      it.Set( static_cast<OutputPixelType>(vcl_sqrt(var)) );
      
      ++bit;
      ++it;
      progress.CompletedPixel();
      }
    }
}

template <class TInputImage, class TOutput>
void
NoiseImageFilter<TInputImage, TOutput>
::PrintSelf(
  std::ostream& os, 
  Indent indent) const
{
  Superclass::PrintSelf( os, indent );
  os << indent << "Radius: " << m_Radius << std::endl;

}

} // end namespace itk

#endif

#endif