/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkGrayscaleConnectedClosingImageFilter_h
#define itkGrayscaleConnectedClosingImageFilter_h

#include "itkImageToImageFilter.h"

namespace itk
{
/** \class GrayscaleConnectedClosingImageFilter
 * \brief Enhance pixels associated with a dark object (identified by
 * a seed pixel) where the dark object is surrounded by a brigher object.
 *
 * GrayscaleConnectedClosingImagefilter is useful for enhancing dark
 * objects that are surrounded by bright borders. This filter makes it
 * easier to threshold the image and extract just the object of
 * interest.
 *
 * Geodesic morphology and the connected closing algorithm are
 * described in Chapter 6 of Pierre Soille's book "Morphological Image
 * Analysis: Principles and Applications", Second Edition, Springer,
 * 2003.
 *
 * \sa GrayscaleGeodesicDilateImageFilter
 * \sa MorphologyImageFilter, GrayscaleDilateImageFilter, GrayscaleFunctionDilateImageFilter, BinaryDilateImageFilter
 * \ingroup ImageEnhancement  MathematicalMorphologyImageFilters
 * \ingroup ITKMathematicalMorphology
 */
template< typename TInputImage, typename TOutputImage >
class GrayscaleConnectedClosingImageFilter:
  public ImageToImageFilter< TInputImage, TOutputImage >
{
public:
  /** Standard class typedefs. */
  typedef GrayscaleConnectedClosingImageFilter            Self;
  typedef ImageToImageFilter< TInputImage, TOutputImage > Superclass;
  typedef SmartPointer< Self >                            Pointer;
  typedef SmartPointer< const Self >                      ConstPointer;

  /** Some convenient typedefs. */
  typedef TInputImage                              InputImageType;
  typedef typename InputImageType::Pointer         InputImagePointer;
  typedef typename InputImageType::ConstPointer    InputImageConstPointer;
  typedef typename InputImageType::RegionType      InputImageRegionType;
  typedef typename InputImageType::PixelType       InputImagePixelType;
  typedef typename InputImageRegionType::IndexType InputImageIndexType;
  typedef TOutputImage                             OutputImageType;
  typedef typename OutputImageType::Pointer        OutputImagePointer;
  typedef typename OutputImageType::ConstPointer   OutputImageConstPointer;
  typedef typename OutputImageType::RegionType     OutputImageRegionType;
  typedef typename OutputImageType::PixelType      OutputImagePixelType;

  /** ImageDimension constants */
  itkStaticConstMacro(InputImageDimension, unsigned int,
                      TInputImage::ImageDimension);
  itkStaticConstMacro(OutputImageDimension, unsigned int,
                      TOutputImage::ImageDimension);

  /** Standard New method. */
  itkNewMacro(Self);

  /** Runtime information support. */
  itkTypeMacro(GrayscaleConnectedClosingImageFilter,
               ImageToImageFilter);

  /** Set/Get the seed pixel for the segmentation */
  itkSetMacro(Seed, InputImageIndexType);
  itkGetConstMacro(Seed, InputImageIndexType);

  /**
   * Set/Get whether the connected components are defined strictly by
   * face connectivity or by face+edge+vertex connectivity.  Default is
   * FullyConnectedOff.  For objects that are 1 pixel wide, use
   * FullyConnectedOn.
   */
  itkSetMacro(FullyConnected, bool);
  itkGetConstReferenceMacro(FullyConnected, bool);
  itkBooleanMacro(FullyConnected);

#ifdef ITK_USE_CONCEPT_CHECKING
  // Begin concept checking
  itkConceptMacro( InputEqualityComparableCheck,
                   ( Concept::EqualityComparable< InputImagePixelType > ) );
  itkConceptMacro( InputConvertibleToOutputCheck,
                   ( Concept::Convertible< InputImagePixelType, OutputImagePixelType > ) );
  itkConceptMacro( InputOStreamWritableCheck,
                   ( Concept::OStreamWritable< InputImagePixelType > ) );
  // End concept checking
#endif

protected:
  GrayscaleConnectedClosingImageFilter();
  ~GrayscaleConnectedClosingImageFilter() {}
  void PrintSelf(std::ostream & os, Indent indent) const ITK_OVERRIDE;

  /** GrayscaleConnectedClosingImageFilter needs the entire input be
   * available. Thus, it needs to provide an implementation of
   * GenerateInputRequestedRegion(). */
  void GenerateInputRequestedRegion() ITK_OVERRIDE;

  /** GrayscaleConnectedClosingImageFilter will produce the entire output. */
  void EnlargeOutputRequestedRegion( DataObject *itkNotUsed(output) ) ITK_OVERRIDE;

  /** Single-threaded version of GenerateData.  This filter delegates
   * to GrayscaleGeodesicDilateImageFilter. */
  void GenerateData() ITK_OVERRIDE;

private:
  GrayscaleConnectedClosingImageFilter(const Self &) ITK_DELETE_FUNCTION;
  void operator=(const Self &) ITK_DELETE_FUNCTION;

  unsigned long       m_NumberOfIterationsUsed;
  InputImageIndexType m_Seed;

  bool m_FullyConnected;
}; // end of class
} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkGrayscaleConnectedClosingImageFilter.hxx"
#endif

#endif
